Wall clock time and date at job start Mon Mar 30 2020 03:52:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31415 * 1 3 3 Si 1.86797 * 120.00072 * 2 1 4 4 H 1.48496 * 109.47196 * 269.99767 * 3 2 1 5 5 H 1.48507 * 109.47300 * 30.00013 * 3 2 1 6 6 H 1.48506 * 109.47213 * 149.99848 * 3 2 1 7 7 C 1.38944 * 120.00081 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99886 * 0.02562 * 7 2 1 9 9 N 1.37095 * 120.00426 * 179.97438 * 7 2 1 10 10 C 1.34778 * 120.00439 * 179.97438 * 9 7 2 11 11 O 1.21295 * 119.99861 * 0.02562 * 10 9 7 12 12 C 1.50696 * 119.99900 * 180.02562 * 10 9 7 13 13 N 1.46509 * 109.46758 * 180.02562 * 12 10 9 14 14 C 1.46382 * 119.32375 * 270.23825 * 13 12 10 15 15 C 1.53241 * 109.25163 * 151.16757 * 14 13 12 16 16 C 1.53249 * 108.56083 * 55.28369 * 15 14 13 17 17 N 1.46378 * 109.15134 * 304.51360 * 16 15 14 18 18 N 1.36600 * 119.32974 * 209.08498 * 17 16 15 19 19 C 1.34133 * 119.33152 * 90.00190 * 13 12 10 20 20 O 1.21593 * 118.69649 * 0.54753 * 19 13 12 21 21 H 0.97004 * 119.99859 * 359.97438 * 1 2 3 22 22 H 0.97003 * 119.99980 * 0.02562 * 9 7 2 23 23 H 1.08998 * 109.47239 * 60.00845 * 12 10 9 24 24 H 1.09001 * 109.47479 * 300.00028 * 12 10 9 25 25 H 1.08998 * 109.63360 * 31.13905 * 14 13 12 26 26 H 1.08997 * 109.31029 * 271.00127 * 14 13 12 27 27 H 1.08991 * 109.62655 * 295.55559 * 15 14 13 28 28 H 1.09000 * 109.61865 * 175.00119 * 15 14 13 29 29 H 1.09005 * 109.52122 * 184.61604 * 16 15 14 30 30 H 1.08998 * 109.52707 * 64.41958 * 16 15 14 31 31 H 1.00893 * 111.00263 * 179.97438 * 18 17 16 32 32 H 1.00901 * 110.99526 * 303.93593 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 2.4957 2.0464 -1.4000 5 1 1.4456 2.6527 0.7001 6 1 3.5457 1.4401 0.7001 7 6 2.0089 -1.2033 0.0005 8 1 1.4689 -2.1386 0.0005 9 7 3.3798 -1.2034 0.0000 10 6 4.0537 -2.3706 0.0011 11 8 3.4473 -3.4210 0.0020 12 6 5.5607 -2.3705 0.0011 13 7 6.0490 -3.7518 0.0017 14 6 6.2830 -4.4289 1.2782 15 6 6.0767 -5.9364 1.0958 16 6 6.9868 -6.4196 -0.0385 17 7 6.7094 -5.6362 -1.2435 18 7 6.9036 -6.2044 -2.4705 19 6 6.2681 -4.3718 -1.1674 20 8 6.0631 -3.7619 -2.1992 21 1 -0.4850 0.8401 0.0004 22 1 3.8649 -0.3633 -0.0004 23 1 5.9240 -1.8560 0.8906 24 1 5.9241 -1.8575 -0.8894 25 1 5.5839 -4.0534 2.0255 26 1 7.3050 -4.2381 1.6055 27 1 5.0360 -6.1352 0.8401 28 1 6.3351 -6.4555 2.0188 29 1 6.7932 -7.4738 -0.2368 30 1 8.0296 -6.2876 0.2498 31 1 6.6746 -5.5567 -3.2093 32 1 7.8492 -6.5431 -2.5665 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000127698746.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:52:48 Heat of formation + Delta-G solvation = -49.037768 kcal Electronic energy + Delta-G solvation = -17917.805474 eV Core-core repulsion = 14913.772862 eV Total energy + Delta-G solvation = -3004.032612 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 242.117 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -42.00994 -40.13858 -37.59197 -37.30671 -35.96878 -33.82135 -33.19125 -30.21706 -29.51267 -26.87493 -25.50150 -24.03897 -21.46583 -20.57730 -19.86872 -19.00005 -18.35344 -17.99429 -17.08858 -16.62735 -16.56533 -16.03764 -15.53984 -15.22919 -14.98457 -14.79075 -14.66863 -14.35049 -14.04674 -13.35495 -13.00200 -12.70068 -12.50173 -12.43438 -12.30400 -11.98875 -11.70223 -11.54506 -11.26615 -10.78083 -10.27856 -9.76257 -8.89697 -8.43637 -6.05052 1.28310 1.31277 1.35760 1.44303 1.89462 1.99553 2.22218 2.47202 3.00374 3.12446 3.69182 3.80420 4.08323 4.13017 4.19176 4.33935 4.42646 4.52699 4.62326 4.72110 4.85985 5.17502 5.31521 5.39073 5.54323 5.90521 6.15073 6.45094 6.55664 6.76409 6.84347 7.34506 7.55486 7.91377 8.74195 Molecular weight = 242.12amu Principal moments of inertia in cm(-1) A = 0.041944 B = 0.005955 C = 0.005822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 667.391004 B = 4700.860983 C = 4807.792757 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.015 4.015 3 Si 0.966 3.034 4 H -0.262 1.262 5 H -0.271 1.271 6 H -0.224 1.224 7 C -0.330 4.330 8 H 0.050 0.950 9 N -0.587 5.587 10 C 0.432 3.568 11 O -0.619 6.619 12 C 0.127 3.873 13 N -0.599 5.599 14 C 0.105 3.895 15 C -0.147 4.147 16 C 0.126 3.874 17 N -0.475 5.475 18 N -0.595 5.595 19 C 0.685 3.315 20 O -0.649 6.649 21 H 0.280 0.720 22 H 0.391 0.609 23 H 0.149 0.851 24 H 0.107 0.893 25 H 0.079 0.921 26 H 0.109 0.891 27 H 0.042 0.958 28 H 0.144 0.856 29 H 0.102 0.898 30 H 0.100 0.900 31 H 0.362 0.638 32 H 0.352 0.648 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.748 -6.806 4.862 23.301 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.213 4.213 3 Si 0.785 3.215 4 H -0.187 1.187 5 H -0.196 1.196 6 H -0.147 1.147 7 C -0.460 4.460 8 H 0.069 0.931 9 N -0.228 5.228 10 C 0.219 3.781 11 O -0.504 6.504 12 C -0.001 4.001 13 N -0.334 5.334 14 C -0.016 4.016 15 C -0.186 4.186 16 C 0.005 3.995 17 N -0.301 5.301 18 N -0.223 5.223 19 C 0.386 3.614 20 O -0.532 6.532 21 H 0.089 0.911 22 H 0.227 0.773 23 H 0.167 0.833 24 H 0.125 0.875 25 H 0.097 0.903 26 H 0.127 0.873 27 H 0.061 0.939 28 H 0.162 0.838 29 H 0.121 0.879 30 H 0.118 0.882 31 H 0.179 0.821 32 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 20.517 -7.644 4.597 22.372 hybrid contribution -0.036 1.546 -0.613 1.663 sum 20.481 -6.098 3.984 21.738 Atomic orbital electron populations 1.69811 1.08203 1.29349 1.50106 1.26154 0.96511 1.02815 0.95836 0.85362 0.79804 0.76489 0.79863 1.18691 1.19562 1.14733 1.18980 0.81515 0.94852 1.50612 0.93133 1.42002 1.05827 1.07540 1.67477 1.21614 0.91784 0.83510 0.81205 1.90531 1.71435 1.32964 1.55490 1.21200 0.88489 0.83623 1.06805 1.46437 1.67696 1.13861 1.05384 1.21971 1.03224 0.92582 0.83847 1.22226 0.99689 0.95606 1.01058 1.21897 1.00273 0.96606 0.80727 1.45845 1.70146 1.09678 1.04417 1.60449 1.31200 1.36861 0.93826 1.15891 0.79556 0.81667 0.84243 1.90838 1.62123 1.65755 1.34455 0.91057 0.77338 0.83333 0.87542 0.90287 0.87301 0.93873 0.83770 0.87928 0.88220 0.82123 0.83321 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.72 13.96 21.66 0.30 -57.42 16 2 C -0.01 -0.83 5.50 84.92 0.47 -0.36 16 3 Si 0.97 39.73 27.74 68.60 1.90 41.63 16 4 H -0.26 -10.49 7.11 99.48 0.71 -9.78 16 5 H -0.27 -10.88 7.11 99.48 0.71 -10.17 16 6 H -0.22 -7.58 6.52 99.48 0.65 -6.93 16 7 C -0.33 -20.14 10.16 84.04 0.85 -19.28 16 8 H 0.05 3.68 7.39 -2.91 -0.02 3.66 16 9 N -0.59 -29.04 5.09 -306.99 -1.56 -30.61 16 10 C 0.43 20.79 7.85 87.66 0.69 21.47 16 11 O -0.62 -36.44 16.01 -3.08 -0.05 -36.48 16 12 C 0.13 4.24 5.80 85.63 0.50 4.74 16 13 N -0.60 -19.15 2.31 -845.67 -1.95 -21.10 16 14 C 0.11 2.26 6.49 86.48 0.56 2.82 16 15 C -0.15 -2.78 6.20 30.76 0.19 -2.59 16 16 C 0.13 2.17 6.76 86.49 0.58 2.76 16 17 N -0.48 -13.25 3.72 -479.84 -1.78 -15.04 16 18 N -0.60 -15.02 10.26 37.02 0.38 -14.64 16 19 C 0.69 25.04 8.03 179.46 1.44 26.49 16 20 O -0.65 -29.21 14.92 -4.01 -0.06 -29.27 16 21 H 0.28 15.74 8.31 -92.70 -0.77 14.97 16 22 H 0.39 15.90 5.76 -92.71 -0.53 15.37 16 23 H 0.15 3.36 8.06 -2.39 -0.02 3.34 16 24 H 0.11 3.56 7.29 -2.39 -0.02 3.54 16 25 H 0.08 1.82 8.07 -2.39 -0.02 1.80 16 26 H 0.11 1.39 8.14 -2.39 -0.02 1.38 16 27 H 0.04 1.22 8.14 -2.39 -0.02 1.20 16 28 H 0.14 1.38 8.14 -2.39 -0.02 1.36 16 29 H 0.10 1.51 8.14 -2.38 -0.02 1.49 16 30 H 0.10 1.02 8.14 -2.39 -0.02 1.01 16 31 H 0.36 10.70 7.46 -210.57 -1.57 9.13 16 32 H 0.35 5.93 9.17 -210.55 -1.93 4.00 16 Total: -1.00 -91.08 273.73 -0.46 -91.54 By element: Atomic # 1 Polarization: 38.27 SS G_CDS: -2.92 Total: 35.36 kcal Atomic # 6 Polarization: 30.75 SS G_CDS: 5.28 Total: 36.03 kcal Atomic # 7 Polarization: -134.19 SS G_CDS: -4.61 Total: -138.80 kcal Atomic # 8 Polarization: -65.64 SS G_CDS: -0.11 Total: -65.75 kcal Atomic # 14 Polarization: 39.73 SS G_CDS: 1.90 Total: 41.63 kcal Total: -91.08 -0.46 -91.54 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000127698746.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.498 kcal (2) G-P(sol) polarization free energy of solvation -91.080 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.582 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.456 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.535 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.038 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds