Wall clock time and date at job start Mon Mar 30 2020 03:40:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09004 * 110.41857 * 2 1 4 4 O 1.44430 * 110.37138 * 122.30882 * 2 1 3 5 5 C 1.44422 * 105.27534 * 159.34301 * 4 2 1 6 6 C 1.54481 * 104.80057 * 319.48827 * 5 4 2 7 7 C 1.54478 * 110.37116 * 237.68572 * 2 1 3 8 8 H 1.09006 * 110.62487 * 98.48727 * 7 2 1 9 9 N 1.46499 * 110.51344 * 335.83654 * 7 2 1 10 10 C 1.34774 * 119.99962 * 158.89784 * 9 7 2 11 11 O 1.21440 * 120.00005 * 0.02562 * 10 9 7 12 12 C 1.48835 * 119.99718 * 179.97438 * 10 9 7 13 13 O 1.21498 * 120.00193 * 0.02562 * 12 10 9 14 14 N 1.34774 * 119.99722 * 180.02562 * 12 10 9 15 15 C 1.36118 * 120.00086 * 180.02562 * 14 12 10 16 16 H 1.07999 * 119.99858 * 0.02562 * 15 14 12 17 17 C 1.39585 * 120.00303 * 179.97438 * 15 14 12 18 18 N 1.31019 * 120.00267 * 179.97438 * 17 15 14 19 19 Si 1.86803 * 119.99908 * 359.97438 * 17 15 14 20 20 H 1.48498 * 109.47174 * 270.00006 * 19 17 15 21 21 H 1.48501 * 109.47062 * 29.99957 * 19 17 15 22 22 H 1.48504 * 109.46913 * 149.99756 * 19 17 15 23 23 H 1.09000 * 109.47384 * 182.31481 * 1 2 3 24 24 H 1.09007 * 109.46784 * 302.31192 * 1 2 3 25 25 H 1.09001 * 109.47291 * 62.31203 * 1 2 3 26 26 H 1.08994 * 110.37264 * 200.65246 * 5 4 2 27 27 H 1.08999 * 110.46870 * 78.36375 * 5 4 2 28 28 H 1.08999 * 110.51040 * 265.33005 * 6 5 4 29 29 H 1.09003 * 110.62901 * 142.68143 * 6 5 4 30 30 H 0.96999 * 119.99984 * 338.90430 * 9 7 2 31 31 H 0.97004 * 120.00566 * 359.97438 * 14 12 10 32 32 H 0.97001 * 119.99874 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9103 1.0215 0.0000 4 8 2.0328 -0.7237 1.1443 5 6 3.3873 -1.0872 0.7996 6 6 3.3177 -1.5057 -0.6858 7 6 2.0678 -0.7741 -1.2239 8 1 2.3426 -0.0858 -2.0232 9 7 1.0729 -1.7390 -1.6987 10 6 1.1354 -2.2051 -2.9617 11 8 2.0167 -1.8256 -3.7061 12 6 0.1250 -3.1858 -3.4438 13 8 -0.7565 -3.5659 -2.6989 14 7 0.1878 -3.6523 -4.7067 15 6 -0.7366 -4.5488 -5.1478 16 1 -1.5206 -4.8860 -4.4860 17 6 -0.6719 -5.0316 -6.4560 18 7 -1.5613 -5.8949 -6.8804 19 14 0.6829 -4.4468 -7.6014 20 1 0.2248 -3.2390 -8.3339 21 1 1.8933 -4.1148 -6.8076 22 1 1.0077 -5.5217 -8.5732 23 1 -0.3634 -1.0268 0.0415 24 1 -0.3633 0.5494 0.8686 25 1 -0.3634 0.4775 -0.9100 26 1 3.7241 -1.9222 1.4138 27 1 4.0540 -0.2336 0.9224 28 1 3.1955 -2.5853 -0.7731 29 1 4.2105 -1.1791 -1.2191 30 1 0.3691 -2.0423 -1.1040 31 1 0.8913 -3.3487 -5.3016 32 1 -1.5165 -6.2301 -7.7896 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000149783531.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:40:14 Heat of formation + Delta-G solvation = -134.864249 kcal Electronic energy + Delta-G solvation = -17586.644921 eV Core-core repulsion = 14546.597843 eV Total energy + Delta-G solvation = -3040.047078 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 242.110 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.73380 -40.46331 -39.03798 -36.57057 -35.57485 -33.96728 -32.51988 -31.76025 -28.15881 -26.85985 -24.65354 -23.06115 -21.70944 -21.23964 -21.00434 -18.89733 -18.03760 -17.17892 -16.95763 -16.68727 -16.49614 -16.46811 -15.74909 -15.41919 -14.88403 -14.66512 -14.43174 -13.98791 -13.53540 -13.32104 -13.20288 -13.08784 -12.57336 -12.51495 -12.20834 -12.04361 -11.96247 -11.93630 -11.72655 -10.87351 -10.49397 -10.37543 -10.23867 -8.63816 -6.18125 0.48525 1.28021 1.32417 1.38238 1.67602 2.09216 2.25515 2.84987 3.01988 3.05346 3.54926 3.61860 3.78039 4.01461 4.11673 4.19312 4.35335 4.50519 4.67293 4.84905 4.87838 4.93261 5.02168 5.21352 5.24912 5.29720 5.72098 5.83613 6.05277 6.34047 6.56546 6.87274 7.12638 7.60322 8.50712 Molecular weight = 242.11amu Principal moments of inertia in cm(-1) A = 0.044224 B = 0.005574 C = 0.005240 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 632.995377 B = 5021.963335 C = 5342.209242 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.072 3.928 3 H 0.113 0.887 4 O -0.389 6.389 5 C 0.048 3.952 6 C -0.168 4.168 7 C 0.105 3.895 8 H 0.108 0.892 9 N -0.685 5.685 10 C 0.525 3.475 11 O -0.557 6.557 12 C 0.403 3.597 13 O -0.605 6.605 14 N -0.530 5.530 15 C -0.340 4.340 16 H 0.077 0.923 17 C 0.012 3.988 18 N -0.891 5.891 19 Si 0.949 3.051 20 H -0.251 1.251 21 H -0.248 1.248 22 H -0.257 1.257 23 H 0.051 0.949 24 H 0.082 0.918 25 H 0.078 0.922 26 H 0.101 0.899 27 H 0.088 0.912 28 H 0.062 0.938 29 H 0.100 0.900 30 H 0.415 0.585 31 H 0.393 0.607 32 H 0.291 0.709 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.244 12.956 10.193 19.955 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.014 3.986 3 H 0.130 0.870 4 O -0.309 6.309 5 C -0.028 4.028 6 C -0.207 4.207 7 C 0.000 4.000 8 H 0.126 0.874 9 N -0.340 5.340 10 C 0.308 3.692 11 O -0.435 6.435 12 C 0.188 3.812 13 O -0.492 6.492 14 N -0.168 5.168 15 C -0.470 4.470 16 H 0.095 0.905 17 C -0.193 4.193 18 N -0.529 5.529 19 Si 0.768 3.232 20 H -0.175 1.175 21 H -0.172 1.172 22 H -0.181 1.181 23 H 0.070 0.930 24 H 0.101 0.899 25 H 0.097 0.903 26 H 0.119 0.881 27 H 0.106 0.894 28 H 0.081 0.919 29 H 0.118 0.882 30 H 0.254 0.746 31 H 0.230 0.770 32 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 11.079 12.793 10.204 19.762 hybrid contribution 0.095 -0.425 -0.832 0.939 sum 11.174 12.369 9.372 19.123 Atomic orbital electron populations 1.21825 0.92765 1.02605 1.03823 1.23362 0.96085 0.96245 0.82932 0.86953 1.89163 1.28479 1.74928 1.38321 1.23541 0.84077 1.01412 0.93765 1.23427 0.98489 1.01168 0.97572 1.22689 0.88215 0.90888 0.98166 0.87432 1.45893 1.32190 1.44072 1.11809 1.19857 0.84519 0.81597 0.83267 1.90667 1.36826 1.59817 1.56236 1.19678 0.89263 0.88397 0.83819 1.90607 1.39268 1.63560 1.55768 1.41691 1.26511 1.37264 1.11380 1.19175 1.08635 1.20646 0.98506 0.90481 1.26092 0.99940 0.95262 0.98053 1.69550 1.35398 1.28440 1.19475 0.85584 0.78573 0.80012 0.79011 1.17479 1.17189 1.18059 0.92980 0.89900 0.90291 0.88080 0.89392 0.91869 0.88170 0.74554 0.77047 0.89875 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.01 8.89 71.98 0.64 -2.37 16 2 C 0.07 1.37 3.88 31.10 0.12 1.49 16 3 H 0.11 1.54 8.14 -2.39 -0.02 1.52 16 4 O -0.39 -8.46 11.34 -148.98 -1.69 -10.15 16 5 C 0.05 0.81 7.63 72.49 0.55 1.36 16 6 C -0.17 -3.50 6.87 31.61 0.22 -3.28 16 7 C 0.10 2.47 3.27 46.00 0.15 2.63 16 8 H 0.11 2.50 7.67 -2.38 -0.02 2.48 16 9 N -0.69 -21.55 4.49 -439.65 -1.98 -23.52 16 10 C 0.53 20.90 7.86 87.08 0.68 21.58 16 11 O -0.56 -22.82 16.18 -3.53 -0.06 -22.88 16 12 C 0.40 19.76 7.82 87.08 0.68 20.44 16 13 O -0.60 -32.93 16.03 -3.71 -0.06 -32.99 16 14 N -0.53 -27.03 5.06 -308.88 -1.56 -28.59 16 15 C -0.34 -19.71 10.16 84.35 0.86 -18.85 16 16 H 0.08 5.13 7.36 -2.91 -0.02 5.11 16 17 C 0.01 0.63 5.51 85.14 0.47 1.10 16 18 N -0.89 -50.65 13.94 21.77 0.30 -50.35 16 19 Si 0.95 39.06 27.74 68.60 1.90 40.97 16 20 H -0.25 -9.80 7.11 99.48 0.71 -9.09 16 21 H -0.25 -9.65 6.53 99.48 0.65 -9.00 16 22 H -0.26 -9.97 7.11 99.48 0.71 -9.26 16 23 H 0.05 1.21 6.23 -2.39 -0.01 1.20 16 24 H 0.08 1.38 8.14 -2.38 -0.02 1.36 16 25 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 26 H 0.10 1.52 8.14 -2.39 -0.02 1.50 16 27 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 28 H 0.06 1.59 7.96 -2.39 -0.02 1.57 16 29 H 0.10 1.79 8.14 -2.39 -0.02 1.77 16 30 H 0.41 13.17 5.83 -92.71 -0.54 12.63 16 31 H 0.39 18.26 5.22 -92.71 -0.48 17.78 16 32 H 0.29 14.86 8.30 -92.71 -0.77 14.09 16 Total: -1.00 -68.59 274.85 1.32 -67.28 By element: Atomic # 1 Polarization: 36.07 SS G_CDS: 0.08 Total: 36.15 kcal Atomic # 6 Polarization: 19.72 SS G_CDS: 4.37 Total: 24.09 kcal Atomic # 7 Polarization: -99.23 SS G_CDS: -3.23 Total: -102.47 kcal Atomic # 8 Polarization: -64.21 SS G_CDS: -1.81 Total: -66.02 kcal Atomic # 14 Polarization: 39.06 SS G_CDS: 1.90 Total: 40.97 kcal Total: -68.59 1.32 -67.28 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000149783531.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.586 kcal (2) G-P(sol) polarization free energy of solvation -68.593 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.179 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.315 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.278 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.864 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds