Wall clock time and date at job start Mon Mar 30 2020 03:40:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08995 * 110.33597 * 2 1 4 4 O 1.44429 * 110.46667 * 237.68178 * 2 1 3 5 5 C 1.44422 * 105.27416 * 200.61437 * 4 2 1 6 6 C 1.54797 * 104.80735 * 40.58794 * 5 4 2 7 7 C 1.54485 * 110.36949 * 122.25134 * 2 1 3 8 8 H 1.08995 * 110.51047 * 24.13644 * 7 2 1 9 9 N 1.46498 * 110.50982 * 261.56612 * 7 2 1 10 10 C 1.34774 * 120.00212 * 156.90796 * 9 7 2 11 11 O 1.21434 * 119.99942 * 359.97438 * 10 9 7 12 12 C 1.48830 * 119.99837 * 179.97438 * 10 9 7 13 13 O 1.21502 * 120.00593 * 359.72145 * 12 10 9 14 14 N 1.34784 * 119.99829 * 179.97438 * 12 10 9 15 15 C 1.36116 * 119.99801 * 179.72475 * 14 12 10 16 16 H 1.07991 * 120.00478 * 359.97438 * 15 14 12 17 17 C 1.39595 * 119.99584 * 180.02562 * 15 14 12 18 18 N 1.31014 * 119.99897 * 359.97438 * 17 15 14 19 19 Si 1.86798 * 119.99635 * 180.02562 * 17 15 14 20 20 H 1.48493 * 109.47326 * 90.00114 * 19 17 15 21 21 H 1.48505 * 109.46917 * 209.99960 * 19 17 15 22 22 H 1.48498 * 109.47210 * 329.99575 * 19 17 15 23 23 H 1.08995 * 109.46818 * 297.75442 * 1 2 3 24 24 H 1.09004 * 109.46470 * 57.74938 * 1 2 3 25 25 H 1.08994 * 109.47463 * 177.74817 * 1 2 3 26 26 H 1.09008 * 110.37257 * 159.34809 * 5 4 2 27 27 H 1.09003 * 110.37199 * 281.56867 * 5 4 2 28 28 H 1.08993 * 110.55716 * 217.33461 * 6 5 4 29 29 H 1.09003 * 110.60822 * 94.52340 * 6 5 4 30 30 H 0.97004 * 119.99753 * 336.89820 * 9 7 2 31 31 H 0.97005 * 119.99846 * 359.72428 * 14 12 10 32 32 H 0.97001 * 119.99499 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9088 1.0220 0.0000 4 8 2.0350 -0.7234 -1.1435 5 6 3.3897 -1.0847 -0.7972 6 6 3.3189 -1.5055 0.6908 7 6 2.0677 -0.7728 1.2248 8 1 1.3273 -1.4900 1.5791 9 7 2.4350 0.1556 2.2968 10 6 2.4778 -0.2726 3.5740 11 8 2.2114 -1.4279 3.8362 12 6 2.8515 0.6706 4.6629 13 8 3.1230 1.8254 4.4000 14 7 2.8938 0.2425 5.9403 15 6 3.2411 1.1037 6.9355 16 1 3.4831 2.1298 6.7017 17 6 3.2853 0.6601 8.2584 18 7 2.9922 -0.5849 8.5420 19 14 3.7612 1.8422 9.6243 20 1 2.5423 2.5081 10.1496 21 1 4.4259 1.0912 10.7195 22 1 4.6938 2.8667 9.0897 23 1 -0.3633 0.4786 0.9094 24 1 -0.3632 0.5484 -0.8692 25 1 -0.3634 -1.0268 -0.0404 26 1 3.7285 -1.9196 -1.4108 27 1 4.0541 -0.2295 -0.9214 28 1 4.2107 -1.1770 1.2244 29 1 3.1959 -2.5850 0.7788 30 1 2.6476 1.0786 2.0873 31 1 2.6768 -0.6793 6.1503 32 1 3.0233 -0.8932 9.4611 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000149783738.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:40:17 Heat of formation + Delta-G solvation = -122.551364 kcal Electronic energy + Delta-G solvation = -17370.429383 eV Core-core repulsion = 14330.916231 eV Total energy + Delta-G solvation = -3039.513152 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 242.110 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.19203 -38.94722 -37.14672 -34.72116 -33.96523 -31.65177 -31.45993 -30.59071 -26.36931 -25.39088 -23.02804 -22.23657 -20.77163 -19.44662 -18.37698 -17.27366 -16.56883 -15.84362 -15.61892 -15.51048 -14.78203 -14.64208 -14.01573 -13.84388 -13.56265 -12.98683 -12.78269 -12.52187 -12.38203 -11.98379 -11.79982 -11.43945 -11.30551 -11.21941 -10.81651 -10.57551 -10.46056 -10.38371 -9.93666 -9.75707 -8.84720 -8.32779 -8.26783 -6.71165 -4.03366 2.37546 3.11943 3.12518 3.17604 3.28151 3.79305 4.03748 4.20498 4.52570 4.60902 4.89945 4.93463 4.98366 5.11955 5.15164 5.26989 5.47000 5.57799 5.67835 5.82444 5.90848 5.96258 6.02720 6.07272 6.53298 6.81344 7.27132 7.62073 7.80905 8.27511 8.55910 8.91658 9.27109 9.80417 10.43562 Molecular weight = 242.11amu Principal moments of inertia in cm(-1) A = 0.052867 B = 0.004753 C = 0.004689 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 529.500865 B = 5889.083366 C = 5970.290395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.067 3.933 3 H 0.076 0.924 4 O -0.370 6.370 5 C 0.045 3.955 6 C -0.168 4.168 7 C 0.117 3.883 8 H 0.103 0.897 9 N -0.707 5.707 10 C 0.515 3.485 11 O -0.543 6.543 12 C 0.392 3.608 13 O -0.598 6.598 14 N -0.497 5.497 15 C -0.306 4.306 16 H 0.113 0.887 17 C 0.031 3.969 18 N -0.867 5.867 19 Si 0.940 3.060 20 H -0.273 1.273 21 H -0.280 1.280 22 H -0.265 1.265 23 H 0.075 0.925 24 H 0.065 0.935 25 H 0.066 0.934 26 H 0.092 0.908 27 H 0.061 0.939 28 H 0.084 0.916 29 H 0.083 0.917 30 H 0.410 0.590 31 H 0.405 0.595 32 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.304 -0.776 -12.965 13.053 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.008 3.992 3 H 0.094 0.906 4 O -0.288 6.288 5 C -0.032 4.032 6 C -0.207 4.207 7 C 0.011 3.989 8 H 0.121 0.879 9 N -0.362 5.362 10 C 0.300 3.700 11 O -0.420 6.420 12 C 0.176 3.824 13 O -0.487 6.487 14 N -0.131 5.131 15 C -0.437 4.437 16 H 0.131 0.869 17 C -0.176 4.176 18 N -0.505 5.505 19 Si 0.765 3.235 20 H -0.199 1.199 21 H -0.205 1.205 22 H -0.189 1.189 23 H 0.093 0.907 24 H 0.084 0.916 25 H 0.085 0.915 26 H 0.110 0.890 27 H 0.079 0.921 28 H 0.103 0.897 29 H 0.101 0.899 30 H 0.246 0.754 31 H 0.240 0.760 32 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -1.451 -1.047 -12.961 13.084 hybrid contribution 0.383 0.332 0.901 1.034 sum -1.068 -0.715 -12.060 12.129 Atomic orbital electron populations 1.21800 0.92419 1.03237 1.02829 1.23195 0.95939 0.95603 0.84431 0.90647 1.89146 1.27306 1.74679 1.37688 1.23472 0.84478 1.00041 0.95163 1.23445 0.99354 1.01953 0.95989 1.22339 0.96878 0.92311 0.87390 0.87857 1.45678 1.70524 1.14444 1.05598 1.20732 0.77019 0.88268 0.83969 1.90690 1.48595 1.19204 1.83503 1.18915 0.91218 0.88425 0.83804 1.90583 1.57201 1.18467 1.82441 1.41574 1.53184 1.13871 1.04503 1.19893 1.43052 0.95455 0.85273 0.86931 1.25602 0.96150 0.96794 0.99016 1.69484 1.43940 1.15371 1.21746 0.85709 0.79081 0.79538 0.79170 1.19853 1.20489 1.18876 0.90654 0.91630 0.91524 0.88959 0.92050 0.89687 0.89861 0.75372 0.75987 0.90855 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.54 9.52 37.16 0.35 -1.19 16 2 C 0.07 0.79 3.63 -25.95 -0.09 0.70 16 3 H 0.08 0.84 7.75 -51.93 -0.40 0.44 16 4 O -0.37 -4.61 11.35 -35.23 -0.40 -5.01 16 5 C 0.05 0.48 7.64 38.10 0.29 0.77 16 6 C -0.17 -2.11 6.90 -24.99 -0.17 -2.28 16 7 C 0.12 1.63 2.98 -66.36 -0.20 1.43 16 8 H 0.10 1.57 7.34 -51.93 -0.38 1.19 16 9 N -0.71 -11.73 5.05 -52.92 -0.27 -12.00 16 10 C 0.52 10.92 7.87 -11.88 -0.09 10.83 16 11 O -0.54 -12.45 16.15 5.42 0.09 -12.36 16 12 C 0.39 9.71 7.82 -11.87 -0.09 9.62 16 13 O -0.60 -15.75 16.03 5.36 0.09 -15.66 16 14 N -0.50 -13.14 5.25 -11.59 -0.06 -13.20 16 15 C -0.31 -8.34 9.67 -15.14 -0.15 -8.48 16 16 H 0.11 3.13 7.15 -52.49 -0.38 2.75 16 17 C 0.03 0.81 5.51 -17.39 -0.10 0.71 16 18 N -0.87 -22.99 13.03 55.53 0.72 -22.27 16 19 Si 0.94 19.82 29.56 -169.99 -5.02 14.79 16 20 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 21 H -0.28 -5.75 7.11 56.52 0.40 -5.35 16 22 H -0.26 -5.54 7.11 56.52 0.40 -5.13 16 23 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 24 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 25 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 26 H 0.09 0.81 8.14 -51.92 -0.42 0.39 16 27 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.08 1.13 7.96 -51.93 -0.41 0.72 16 29 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 30 H 0.41 6.39 7.83 -40.82 -0.32 6.07 16 31 H 0.40 10.78 7.35 -40.82 -0.30 10.48 16 32 H 0.28 6.90 8.30 -40.82 -0.34 6.56 16 LS Contribution 281.81 15.07 4.25 4.25 Total: -1.00 -30.19 281.81 -4.72 -34.91 By element: Atomic # 1 Polarization: 18.30 SS G_CDS: -3.86 Total: 14.44 kcal Atomic # 6 Polarization: 12.36 SS G_CDS: -0.25 Total: 12.11 kcal Atomic # 7 Polarization: -47.86 SS G_CDS: 0.40 Total: -47.46 kcal Atomic # 8 Polarization: -32.81 SS G_CDS: -0.23 Total: -33.04 kcal Atomic # 14 Polarization: 19.82 SS G_CDS: -5.02 Total: 14.79 kcal Total LS contribution 4.25 Total: 4.25 kcal Total: -30.19 -4.72 -34.91 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000149783738.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.640 kcal (2) G-P(sol) polarization free energy of solvation -30.192 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.832 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.719 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.911 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds