Wall clock time and date at job start Mon Mar 30 2020 03:40:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09003 * 110.41647 * 2 1 4 4 O 1.44415 * 110.37805 * 237.68696 * 2 1 3 5 5 C 1.44642 * 105.37338 * 200.73667 * 4 2 1 6 6 C 1.54477 * 104.69773 * 40.34325 * 5 4 2 7 7 C 1.54478 * 110.37213 * 122.30373 * 2 1 3 8 8 H 1.08999 * 110.51553 * 261.45690 * 7 2 1 9 9 N 1.46505 * 110.51245 * 24.17047 * 7 2 1 10 10 C 1.34777 * 120.00194 * 201.09709 * 9 7 2 11 11 O 1.21440 * 119.99796 * 359.97438 * 10 9 7 12 12 C 1.48828 * 120.00274 * 179.97438 * 10 9 7 13 13 O 1.21503 * 119.99298 * 359.97438 * 12 10 9 14 14 N 1.34770 * 120.00178 * 179.97438 * 12 10 9 15 15 C 1.36123 * 119.99679 * 179.97438 * 14 12 10 16 16 H 1.07990 * 120.00442 * 0.02562 * 15 14 12 17 17 C 1.39587 * 119.99469 * 180.02562 * 15 14 12 18 18 N 1.31010 * 120.00590 * 0.02562 * 17 15 14 19 19 Si 1.86801 * 119.99692 * 180.02562 * 17 15 14 20 20 H 1.48503 * 109.47447 * 90.00164 * 19 17 15 21 21 H 1.48504 * 109.47042 * 209.99904 * 19 17 15 22 22 H 1.48496 * 109.47249 * 329.99776 * 19 17 15 23 23 H 1.09000 * 109.47342 * 297.68921 * 1 2 3 24 24 H 1.09003 * 109.47259 * 57.69821 * 1 2 3 25 25 H 1.09006 * 109.46692 * 177.69385 * 1 2 3 26 26 H 1.09006 * 110.33613 * 281.58701 * 5 4 2 27 27 H 1.09000 * 110.51087 * 159.18466 * 5 4 2 28 28 H 1.09002 * 110.51371 * 217.47805 * 6 5 4 29 29 H 1.08994 * 110.51108 * 94.90453 * 6 5 4 30 30 H 0.96994 * 120.00006 * 21.09021 * 9 7 2 31 31 H 0.96995 * 120.00329 * 0.02562 * 14 12 10 32 32 H 0.97000 * 120.00701 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9102 1.0216 0.0000 4 8 2.0328 -0.7236 -1.1441 5 6 3.3890 -1.0904 -0.8001 6 6 3.3178 -1.5056 0.6861 7 6 2.0677 -0.7739 1.2240 8 1 2.3429 -0.0838 2.0216 9 7 1.0729 -1.7389 1.6989 10 6 1.1354 -2.2049 2.9620 11 8 2.0166 -1.8253 3.7063 12 6 0.1244 -3.1847 3.4446 13 8 -0.7575 -3.5641 2.6999 14 7 0.1872 -3.6511 4.7074 15 6 -0.7378 -4.5469 5.1489 16 1 -1.5217 -4.8842 4.4871 17 6 -0.6730 -5.0295 6.4571 18 7 0.2777 -4.6201 7.2601 19 14 -1.9419 -6.2594 7.0627 20 1 -1.4620 -7.6388 6.7942 21 1 -2.1458 -6.0818 8.5229 22 1 -3.2267 -6.0352 6.3527 23 1 -0.3634 0.4775 0.9100 24 1 -0.3634 0.5492 -0.8686 25 1 -0.3633 -1.0269 -0.0414 26 1 4.0554 -0.2366 -0.9241 27 1 3.7253 -1.9272 -1.4122 28 1 4.2109 -1.1771 1.2177 29 1 3.1966 -2.5850 0.7757 30 1 0.3692 -2.0423 1.1043 31 1 0.8911 -3.3480 5.3020 32 1 0.3230 -4.9557 8.1691 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000149784152.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:40:22 Heat of formation + Delta-G solvation = -140.645699 kcal Electronic energy + Delta-G solvation = -17524.144985 eV Core-core repulsion = 14483.847204 eV Total energy + Delta-G solvation = -3040.297781 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 242.110 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.65221 -40.37233 -38.93713 -36.49563 -35.55491 -33.47958 -32.52423 -31.72991 -28.03095 -26.88136 -24.81068 -23.05970 -21.73888 -21.17000 -20.42011 -18.93513 -17.96312 -17.09559 -16.93196 -16.59777 -16.47137 -16.38044 -15.72622 -15.67895 -14.87840 -14.56308 -13.98114 -13.68594 -13.52570 -13.32048 -13.19166 -12.97188 -12.59035 -12.31628 -12.20884 -12.10615 -11.99480 -11.93383 -11.67690 -10.87244 -10.29824 -10.27617 -10.19652 -8.67177 -6.12161 0.57458 1.40989 1.46796 1.55509 1.78332 2.28613 2.35020 2.83706 3.13843 3.23904 3.55882 3.62360 3.97445 4.03221 4.11789 4.18957 4.35385 4.50763 4.66646 4.84767 4.87859 4.92794 5.01896 5.21638 5.24160 5.33149 5.66623 5.82742 6.13591 6.35876 6.79005 6.98898 7.26419 7.78539 8.48590 Molecular weight = 242.11amu Principal moments of inertia in cm(-1) A = 0.050265 B = 0.005062 C = 0.004845 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 556.917791 B = 5530.444587 C = 5778.297118 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.072 3.928 3 H 0.112 0.888 4 O -0.389 6.389 5 C 0.050 3.950 6 C -0.168 4.168 7 C 0.105 3.895 8 H 0.102 0.898 9 N -0.686 5.686 10 C 0.521 3.479 11 O -0.563 6.563 12 C 0.387 3.613 13 O -0.618 6.618 14 N -0.509 5.509 15 C -0.346 4.346 16 H 0.098 0.902 17 C -0.003 4.003 18 N -0.895 5.895 19 Si 1.010 2.990 20 H -0.265 1.265 21 H -0.266 1.266 22 H -0.264 1.264 23 H 0.077 0.923 24 H 0.084 0.916 25 H 0.052 0.948 26 H 0.088 0.912 27 H 0.103 0.897 28 H 0.097 0.903 29 H 0.061 0.939 30 H 0.414 0.586 31 H 0.401 0.599 32 H 0.289 0.711 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.588 8.141 -11.172 14.565 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.015 3.985 3 H 0.130 0.870 4 O -0.309 6.309 5 C -0.026 4.026 6 C -0.207 4.207 7 C 0.000 4.000 8 H 0.120 0.880 9 N -0.341 5.341 10 C 0.304 3.696 11 O -0.442 6.442 12 C 0.172 3.828 13 O -0.508 6.508 14 N -0.143 5.143 15 C -0.476 4.476 16 H 0.116 0.884 17 C -0.208 4.208 18 N -0.533 5.533 19 Si 0.831 3.169 20 H -0.190 1.190 21 H -0.191 1.191 22 H -0.188 1.188 23 H 0.095 0.905 24 H 0.102 0.898 25 H 0.071 0.929 26 H 0.106 0.894 27 H 0.121 0.879 28 H 0.115 0.885 29 H 0.080 0.920 30 H 0.254 0.746 31 H 0.236 0.764 32 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 4.601 8.106 -11.135 14.521 hybrid contribution -0.199 -0.626 0.780 1.020 sum 4.403 7.479 -10.355 13.511 Atomic orbital electron populations 1.21813 0.92663 1.02643 1.03772 1.23343 0.96158 0.96157 0.82873 0.87047 1.89176 1.28549 1.74898 1.38233 1.23581 0.84056 1.01426 0.93573 1.23416 0.98459 1.01107 0.97705 1.22644 0.88357 0.90941 0.98058 0.87972 1.45853 1.32179 1.44201 1.11837 1.20065 0.84682 0.81713 0.83125 1.90671 1.37158 1.59949 1.56400 1.19632 0.89664 0.89177 0.84324 1.90551 1.39654 1.64601 1.55970 1.41649 1.26394 1.35788 1.10477 1.19983 1.09069 1.20749 0.97778 0.88374 1.26535 0.99666 0.99608 0.94967 1.69542 1.32619 1.42722 1.08384 0.84691 0.77334 0.77184 0.77684 1.18979 1.19054 1.18809 0.90453 0.89750 0.92914 0.89359 0.87901 0.88460 0.91995 0.74605 0.76446 0.90050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.19 8.89 71.98 0.64 -2.55 16 2 C 0.07 1.51 3.89 31.10 0.12 1.63 16 3 H 0.11 1.72 8.14 -2.39 -0.02 1.70 16 4 O -0.39 -8.96 11.35 -148.98 -1.69 -10.65 16 5 C 0.05 0.91 7.65 72.48 0.55 1.47 16 6 C -0.17 -3.91 6.86 31.61 0.22 -3.70 16 7 C 0.10 2.74 3.27 46.01 0.15 2.89 16 8 H 0.10 2.72 7.68 -2.39 -0.02 2.71 16 9 N -0.69 -23.38 4.49 -439.64 -1.98 -25.35 16 10 C 0.52 22.67 7.86 87.08 0.68 23.35 16 11 O -0.56 -26.03 16.18 -3.53 -0.06 -26.08 16 12 C 0.39 19.98 7.81 87.08 0.68 20.66 16 13 O -0.62 -33.93 16.03 -3.72 -0.06 -33.99 16 14 N -0.51 -28.02 5.25 -308.89 -1.62 -29.64 16 15 C -0.35 -19.51 9.67 84.35 0.82 -18.69 16 16 H 0.10 5.69 7.15 -2.92 -0.02 5.67 16 17 C 0.00 -0.17 5.51 85.14 0.47 0.30 16 18 N -0.90 -47.94 13.03 21.76 0.28 -47.66 16 19 Si 1.01 40.65 29.56 68.60 2.03 42.68 16 20 H -0.26 -10.27 7.11 99.48 0.71 -9.56 16 21 H -0.27 -10.06 7.11 99.48 0.71 -9.35 16 22 H -0.26 -10.51 7.11 99.48 0.71 -9.80 16 23 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 24 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 25 H 0.05 1.29 6.23 -2.38 -0.01 1.27 16 26 H 0.09 1.16 8.14 -2.38 -0.02 1.14 16 27 H 0.10 1.67 8.14 -2.39 -0.02 1.65 16 28 H 0.10 2.01 8.14 -2.39 -0.02 1.99 16 29 H 0.06 1.72 7.96 -2.39 -0.02 1.70 16 30 H 0.41 13.99 5.83 -92.71 -0.54 13.45 16 31 H 0.40 22.23 7.35 -92.71 -0.68 21.55 16 32 H 0.29 14.16 8.30 -92.71 -0.77 13.39 16 Total: -1.00 -65.99 277.98 1.18 -64.81 By element: Atomic # 1 Polarization: 40.60 SS G_CDS: -0.06 Total: 40.54 kcal Atomic # 6 Polarization: 21.03 SS G_CDS: 4.33 Total: 25.36 kcal Atomic # 7 Polarization: -99.35 SS G_CDS: -3.31 Total: -102.66 kcal Atomic # 8 Polarization: -68.92 SS G_CDS: -1.81 Total: -70.73 kcal Atomic # 14 Polarization: 40.65 SS G_CDS: 2.03 Total: 42.68 kcal Total: -65.99 1.18 -64.81 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000149784152.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.834 kcal (2) G-P(sol) polarization free energy of solvation -65.994 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.827 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.812 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.646 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds