Wall clock time and date at job start Mon Mar 30 2020 03:43:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34772 * 120.00222 * 2 1 4 4 O 1.21440 * 120.00247 * 183.60112 * 3 2 1 5 5 C 1.48824 * 119.99942 * 3.60956 * 3 2 1 6 6 O 1.21506 * 120.00294 * 354.15509 * 5 3 2 7 7 N 1.34785 * 120.00306 * 174.15263 * 5 3 2 8 8 C 1.36114 * 120.00125 * 179.97438 * 7 5 3 9 9 H 1.07998 * 120.00667 * 0.02562 * 8 7 5 10 10 C 1.39589 * 119.99856 * 180.02562 * 8 7 5 11 11 N 1.31014 * 120.00231 * 180.02562 * 10 8 7 12 12 Si 1.86801 * 120.00058 * 0.02562 * 10 8 7 13 13 H 1.48506 * 109.47023 * 270.00086 * 12 10 8 14 14 H 1.48502 * 109.47189 * 29.99625 * 12 10 8 15 15 H 1.48499 * 109.47441 * 149.99865 * 12 10 8 16 16 C 1.46501 * 119.99519 * 180.02562 * 2 1 3 17 17 H 1.09003 * 110.45624 * 182.60331 * 16 2 1 18 18 C 1.54511 * 110.51392 * 60.00403 * 16 2 1 19 19 C 1.54480 * 104.06238 * 241.35264 * 18 16 2 20 20 O 1.44419 * 104.80300 * 23.97721 * 19 18 16 21 21 C 1.44424 * 105.27510 * 319.48711 * 20 19 18 22 22 H 1.09006 * 109.46995 * 83.98304 * 1 2 3 23 23 H 1.08994 * 109.47323 * 203.98566 * 1 2 3 24 24 H 1.08998 * 109.47155 * 323.98679 * 1 2 3 25 25 H 0.97005 * 119.99408 * 359.97438 * 7 5 3 26 26 H 0.96997 * 119.99855 * 180.02562 * 11 10 8 27 27 H 1.09004 * 110.50717 * 359.97438 * 18 16 2 28 28 H 1.08998 * 110.51456 * 122.56565 * 18 16 2 29 29 H 1.09003 * 110.37193 * 142.80421 * 19 18 16 30 30 H 1.08996 * 110.37318 * 265.14343 * 19 18 16 31 31 H 1.08993 * 110.37411 * 281.68030 * 21 20 19 32 32 H 1.09008 * 110.37357 * 159.34633 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 3.3515 1.1682 -0.0661 5 6 1.3970 2.4547 0.0811 6 8 0.1827 2.4599 0.0403 7 7 2.0722 3.6152 0.2000 8 6 1.3936 4.7929 0.2737 9 1 0.3143 4.7975 0.2373 10 6 2.0929 5.9948 0.3963 11 7 1.4398 7.1283 0.4677 12 14 3.9598 5.9870 0.4585 13 1 4.4076 5.8700 1.8696 14 1 4.4763 4.8340 -0.3219 15 1 4.4798 7.2508 -0.1227 16 6 2.1974 -1.2688 -0.0006 17 1 3.2714 -1.0887 0.0459 18 6 1.8415 -2.0989 -1.2542 19 6 1.2140 -3.3901 -0.6838 20 8 0.7246 -3.0166 0.6226 21 6 1.7429 -2.1568 1.1789 22 1 -0.3633 0.1077 -1.0221 23 1 -0.3634 -0.9389 0.4177 24 1 -0.3633 0.8312 0.6042 25 1 3.0416 3.6111 0.2331 26 1 1.9258 7.9635 0.5525 27 1 1.1203 -1.5653 -1.8734 28 1 2.7395 -2.3290 -1.8275 29 1 0.3912 -3.7236 -1.3162 30 1 1.9682 -4.1722 -0.5971 31 1 2.5782 -2.7497 1.5514 32 1 1.3265 -1.5428 1.9776 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000159339433.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:43:45 Heat of formation + Delta-G solvation = -94.517106 kcal Electronic energy + Delta-G solvation = -17797.793955 eV Core-core repulsion = 14759.496460 eV Total energy + Delta-G solvation = -3038.297495 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 242.110 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.38604 -39.01914 -37.28556 -35.35163 -34.02813 -31.94760 -31.22176 -29.00928 -26.60032 -25.80973 -23.51221 -22.54087 -20.44659 -19.35946 -18.50200 -16.92415 -16.75696 -16.06923 -15.71640 -15.36313 -15.28550 -14.81319 -14.12660 -13.61063 -13.27203 -12.96937 -12.75099 -12.52837 -12.31579 -12.03683 -11.79100 -11.70004 -11.51389 -11.29824 -11.07228 -10.71494 -10.44255 -10.10794 -10.03280 -9.78324 -8.51013 -8.40231 -8.11076 -6.61612 -4.02987 2.23132 3.01114 3.03598 3.07368 3.10334 3.81500 3.93111 4.06301 4.47744 4.60827 4.72920 4.91220 4.98697 5.09253 5.12833 5.43228 5.51516 5.57651 5.62393 5.68175 5.80881 5.95004 6.10600 6.51892 6.61472 6.79985 7.23839 7.52491 7.86375 8.17410 8.45813 8.70923 9.16267 9.58808 10.48306 Molecular weight = 242.11amu Principal moments of inertia in cm(-1) A = 0.049884 B = 0.005760 C = 0.005390 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 561.165086 B = 4859.973928 C = 5193.214769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.067 3.933 2 N -0.588 5.588 3 C 0.514 3.486 4 O -0.553 6.553 5 C 0.404 3.596 6 O -0.569 6.569 7 N -0.526 5.526 8 C -0.308 4.308 9 H 0.128 0.872 10 C 0.053 3.947 11 N -0.848 5.848 12 Si 0.875 3.125 13 H -0.264 1.264 14 H -0.259 1.259 15 H -0.270 1.270 16 C 0.105 3.895 17 H 0.114 0.886 18 C -0.167 4.167 19 C 0.046 3.954 20 O -0.372 6.372 21 C 0.036 3.964 22 H 0.050 0.950 23 H 0.065 0.935 24 H 0.116 0.884 25 H 0.383 0.617 26 H 0.282 0.718 27 H 0.084 0.916 28 H 0.083 0.917 29 H 0.092 0.908 30 H 0.060 0.940 31 H 0.070 0.930 32 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.842 -16.270 -1.003 16.547 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 N -0.321 5.321 3 C 0.300 3.700 4 O -0.431 6.431 5 C 0.189 3.811 6 O -0.456 6.456 7 N -0.162 5.162 8 C -0.438 4.438 9 H 0.146 0.854 10 C -0.155 4.155 11 N -0.485 5.485 12 Si 0.699 3.301 13 H -0.189 1.189 14 H -0.184 1.184 15 H -0.195 1.195 16 C 0.000 4.000 17 H 0.132 0.868 18 C -0.206 4.206 19 C -0.031 4.031 20 O -0.291 6.291 21 C -0.042 4.042 22 H 0.068 0.932 23 H 0.083 0.917 24 H 0.134 0.866 25 H 0.218 0.782 26 H 0.093 0.907 27 H 0.103 0.897 28 H 0.102 0.898 29 H 0.110 0.890 30 H 0.078 0.922 31 H 0.088 0.912 32 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 2.478 -16.081 -0.946 16.299 hybrid contribution 1.610 0.203 -0.180 1.632 sum 4.088 -15.879 -1.126 16.435 Atomic orbital electron populations 1.22414 0.77490 1.04293 1.03276 1.47632 1.08170 1.03959 1.72385 1.20728 0.87241 0.85854 0.76176 1.90656 1.14262 1.87768 1.50463 1.18749 0.87842 0.83904 0.90598 1.90513 1.12723 1.85333 1.57035 1.41844 1.08941 1.05928 1.59495 1.19564 0.95601 0.81071 1.47554 0.85421 1.25231 0.99336 0.94785 0.96166 1.69438 1.37008 0.98110 1.43963 0.86691 0.84232 0.79280 0.79850 1.18886 1.18424 1.19492 1.22450 0.98929 0.84181 0.94439 0.86840 1.23344 1.02330 0.96507 0.98373 1.23404 0.98981 0.95953 0.84742 1.89143 1.42437 1.67099 1.30412 1.23816 0.91893 0.91920 0.96531 0.93158 0.91677 0.86640 0.78204 0.90745 0.89690 0.89807 0.88976 0.92197 0.91157 0.88255 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.09 8.56 59.85 0.51 1.60 16 2 N -0.59 -10.02 2.76 -172.88 -0.48 -10.50 16 3 C 0.51 10.69 7.71 -11.88 -0.09 10.60 16 4 O -0.55 -12.11 15.85 5.42 0.09 -12.02 16 5 C 0.40 9.68 7.70 -11.87 -0.09 9.59 16 6 O -0.57 -14.47 12.69 5.36 0.07 -14.40 16 7 N -0.53 -13.16 5.05 -11.59 -0.06 -13.22 16 8 C -0.31 -8.50 10.16 -15.15 -0.15 -8.66 16 9 H 0.13 3.91 7.37 -52.49 -0.39 3.52 16 10 C 0.05 1.41 5.51 -17.40 -0.10 1.31 16 11 N -0.85 -23.40 13.94 55.53 0.77 -22.62 16 12 Si 0.87 19.19 27.74 -169.99 -4.72 14.48 16 13 H -0.26 -5.66 7.11 56.52 0.40 -5.26 16 14 H -0.26 -5.55 6.53 56.52 0.37 -5.18 16 15 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 16 C 0.10 1.42 3.52 -66.36 -0.23 1.18 16 17 H 0.11 1.60 6.99 -51.93 -0.36 1.24 16 18 C -0.17 -1.84 6.58 -25.16 -0.17 -2.00 16 19 C 0.05 0.44 7.63 37.93 0.29 0.73 16 20 O -0.37 -4.57 10.51 -35.23 -0.37 -4.94 16 21 C 0.04 0.42 6.53 37.93 0.25 0.67 16 22 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 23 H 0.06 0.92 6.19 -51.93 -0.32 0.60 16 24 H 0.12 2.19 5.35 -51.94 -0.28 1.91 16 25 H 0.38 9.06 5.23 -40.82 -0.21 8.85 16 26 H 0.28 7.10 8.30 -40.82 -0.34 6.76 16 27 H 0.08 1.02 7.50 -51.93 -0.39 0.63 16 28 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 29 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 30 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.10 1.23 8.01 -51.92 -0.42 0.81 16 LS Contribution 268.85 15.07 4.05 4.05 Total: -1.00 -30.15 268.85 -4.07 -34.22 By element: Atomic # 1 Polarization: 13.56 SS G_CDS: -3.65 Total: 9.91 kcal Atomic # 6 Polarization: 14.82 SS G_CDS: 0.22 Total: 15.03 kcal Atomic # 7 Polarization: -46.58 SS G_CDS: 0.24 Total: -46.34 kcal Atomic # 8 Polarization: -31.15 SS G_CDS: -0.22 Total: -31.36 kcal Atomic # 14 Polarization: 19.19 SS G_CDS: -4.72 Total: 14.48 kcal Total LS contribution 4.05 Total: 4.05 kcal Total: -30.15 -4.07 -34.22 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000159339433.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.296 kcal (2) G-P(sol) polarization free energy of solvation -30.148 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.221 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.517 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds