Wall clock time and date at job start Mon Mar 30 2020 03:43:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34772 * 120.00222 * 2 1 4 4 O 1.21440 * 120.00247 * 183.60112 * 3 2 1 5 5 C 1.48824 * 119.99942 * 3.60956 * 3 2 1 6 6 O 1.21506 * 120.00294 * 354.15509 * 5 3 2 7 7 N 1.34785 * 120.00306 * 174.15263 * 5 3 2 8 8 C 1.36114 * 120.00125 * 179.97438 * 7 5 3 9 9 H 1.07998 * 120.00667 * 0.02562 * 8 7 5 10 10 C 1.39589 * 119.99856 * 180.02562 * 8 7 5 11 11 N 1.31014 * 120.00231 * 180.02562 * 10 8 7 12 12 Si 1.86801 * 120.00058 * 0.02562 * 10 8 7 13 13 H 1.48506 * 109.47023 * 270.00086 * 12 10 8 14 14 H 1.48502 * 109.47189 * 29.99625 * 12 10 8 15 15 H 1.48499 * 109.47441 * 149.99865 * 12 10 8 16 16 C 1.46501 * 119.99519 * 180.02562 * 2 1 3 17 17 H 1.09003 * 110.45624 * 182.60331 * 16 2 1 18 18 C 1.54511 * 110.51392 * 60.00403 * 16 2 1 19 19 C 1.54480 * 104.06238 * 241.35264 * 18 16 2 20 20 O 1.44419 * 104.80300 * 23.97721 * 19 18 16 21 21 C 1.44424 * 105.27510 * 319.48711 * 20 19 18 22 22 H 1.09006 * 109.46995 * 83.98304 * 1 2 3 23 23 H 1.08994 * 109.47323 * 203.98566 * 1 2 3 24 24 H 1.08998 * 109.47155 * 323.98679 * 1 2 3 25 25 H 0.97005 * 119.99408 * 359.97438 * 7 5 3 26 26 H 0.96997 * 119.99855 * 180.02562 * 11 10 8 27 27 H 1.09004 * 110.50717 * 359.97438 * 18 16 2 28 28 H 1.08998 * 110.51456 * 122.56565 * 18 16 2 29 29 H 1.09003 * 110.37193 * 142.80421 * 19 18 16 30 30 H 1.08996 * 110.37318 * 265.14343 * 19 18 16 31 31 H 1.08993 * 110.37411 * 281.68030 * 21 20 19 32 32 H 1.09008 * 110.37357 * 159.34633 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 3.3515 1.1682 -0.0661 5 6 1.3970 2.4547 0.0811 6 8 0.1827 2.4599 0.0403 7 7 2.0722 3.6152 0.2000 8 6 1.3936 4.7929 0.2737 9 1 0.3143 4.7975 0.2373 10 6 2.0929 5.9948 0.3963 11 7 1.4398 7.1283 0.4677 12 14 3.9598 5.9870 0.4585 13 1 4.4076 5.8700 1.8696 14 1 4.4763 4.8340 -0.3219 15 1 4.4798 7.2508 -0.1227 16 6 2.1974 -1.2688 -0.0006 17 1 3.2714 -1.0887 0.0459 18 6 1.8415 -2.0989 -1.2542 19 6 1.2140 -3.3901 -0.6838 20 8 0.7246 -3.0166 0.6226 21 6 1.7429 -2.1568 1.1789 22 1 -0.3633 0.1077 -1.0221 23 1 -0.3634 -0.9389 0.4177 24 1 -0.3633 0.8312 0.6042 25 1 3.0416 3.6111 0.2331 26 1 1.9258 7.9635 0.5525 27 1 1.1203 -1.5653 -1.8734 28 1 2.7395 -2.3290 -1.8275 29 1 0.3912 -3.7236 -1.3162 30 1 1.9682 -4.1722 -0.5971 31 1 2.5782 -2.7497 1.5514 32 1 1.3265 -1.5428 1.9776 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000159339433.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:43:45 Heat of formation + Delta-G solvation = -117.564308 kcal Electronic energy + Delta-G solvation = -17798.793356 eV Core-core repulsion = 14759.496460 eV Total energy + Delta-G solvation = -3039.296897 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 242.110 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.84428 -40.35956 -39.02966 -36.96722 -35.80656 -33.95330 -32.27608 -29.96305 -28.28523 -27.48547 -25.00380 -23.56095 -21.84532 -21.21553 -20.15425 -18.41216 -18.27687 -17.32700 -17.09119 -16.98215 -16.49351 -16.21204 -15.64845 -15.20282 -14.97498 -14.65288 -14.45536 -14.12229 -13.56530 -13.24553 -13.13634 -13.03652 -12.62477 -12.56168 -12.46151 -12.27593 -12.01985 -11.88791 -11.69691 -10.90335 -10.47995 -10.03441 -9.74688 -8.62696 -6.16071 0.47358 1.28222 1.31887 1.37811 1.56231 2.09541 2.22631 2.83931 2.97725 3.05784 3.58237 3.68784 3.78785 4.04706 4.10447 4.27484 4.37596 4.64674 4.68531 4.69818 4.83093 4.93480 5.03799 5.13771 5.25880 5.39956 5.73845 5.77063 6.00307 6.27234 6.56865 6.80607 7.13971 7.62262 8.51732 Molecular weight = 242.11amu Principal moments of inertia in cm(-1) A = 0.049884 B = 0.005760 C = 0.005390 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 561.165086 B = 4859.973928 C = 5193.214769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -0.575 5.575 3 C 0.518 3.482 4 O -0.562 6.562 5 C 0.405 3.595 6 O -0.587 6.587 7 N -0.533 5.533 8 C -0.337 4.337 9 H 0.080 0.920 10 C 0.012 3.988 11 N -0.892 5.892 12 Si 0.946 3.054 13 H -0.251 1.251 14 H -0.249 1.249 15 H -0.257 1.257 16 C 0.093 3.907 17 H 0.111 0.889 18 C -0.162 4.162 19 C 0.048 3.952 20 O -0.389 6.389 21 C 0.042 3.958 22 H 0.052 0.948 23 H 0.091 0.909 24 H 0.087 0.913 25 H 0.392 0.608 26 H 0.290 0.710 27 H 0.073 0.927 28 H 0.103 0.897 29 H 0.106 0.894 30 H 0.084 0.916 31 H 0.098 0.902 32 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.729 -18.715 -1.206 19.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.307 5.307 3 C 0.303 3.697 4 O -0.442 6.442 5 C 0.191 3.809 6 O -0.474 6.474 7 N -0.171 5.171 8 C -0.466 4.466 9 H 0.098 0.902 10 C -0.193 4.193 11 N -0.529 5.529 12 Si 0.766 3.234 13 H -0.175 1.175 14 H -0.174 1.174 15 H -0.181 1.181 16 C -0.010 4.010 17 H 0.129 0.871 18 C -0.201 4.201 19 C -0.029 4.029 20 O -0.309 6.309 21 C -0.036 4.036 22 H 0.071 0.929 23 H 0.109 0.891 24 H 0.105 0.895 25 H 0.228 0.772 26 H 0.101 0.899 27 H 0.092 0.908 28 H 0.121 0.879 29 H 0.124 0.876 30 H 0.102 0.898 31 H 0.116 0.884 32 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 4.337 -18.560 -1.150 19.095 hybrid contribution 0.871 0.786 -0.138 1.181 sum 5.208 -17.774 -1.288 18.566 Atomic orbital electron populations 1.22278 0.77070 1.04426 1.02968 1.47719 1.08557 1.04266 1.70155 1.20028 0.86899 0.85675 0.77122 1.90651 1.14215 1.87853 1.51459 1.19571 0.87933 0.85069 0.88375 1.90525 1.13933 1.86218 1.56749 1.41722 1.09180 1.05479 1.60708 1.19168 0.93885 0.83009 1.50586 0.90239 1.26053 1.04812 0.93651 0.94801 1.69544 1.39489 0.99025 1.44879 0.85616 0.77075 0.80055 0.80638 1.17530 1.17351 1.18113 1.22841 0.98362 0.82690 0.97072 0.87066 1.23342 1.03062 0.96555 0.97098 1.23585 1.00121 0.95563 0.83590 1.89132 1.43016 1.67054 1.31654 1.23800 0.92662 0.91807 0.95316 0.92945 0.89075 0.89463 0.77241 0.89941 0.90843 0.87858 0.87577 0.89760 0.88360 0.89232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 2.35 8.56 127.77 1.09 3.44 16 2 N -0.57 -18.79 2.76 -819.21 -2.26 -21.05 16 3 C 0.52 21.18 7.71 87.08 0.67 21.85 16 4 O -0.56 -23.75 15.85 -3.53 -0.06 -23.80 16 5 C 0.41 19.75 7.70 87.08 0.67 20.43 16 6 O -0.59 -30.86 12.69 -3.73 -0.05 -30.90 16 7 N -0.53 -27.13 5.05 -308.87 -1.56 -28.69 16 8 C -0.34 -19.38 10.16 84.36 0.86 -18.53 16 9 H 0.08 5.23 7.37 -2.91 -0.02 5.20 16 10 C 0.01 0.64 5.51 85.14 0.47 1.11 16 11 N -0.89 -50.59 13.94 21.77 0.30 -50.28 16 12 Si 0.95 39.23 27.74 68.60 1.90 41.13 16 13 H -0.25 -9.89 7.11 99.48 0.71 -9.18 16 14 H -0.25 -9.85 6.53 99.48 0.65 -9.20 16 15 H -0.26 -10.07 7.11 99.48 0.71 -9.37 16 16 C 0.09 2.28 3.52 46.01 0.16 2.44 16 17 H 0.11 2.83 6.99 -2.39 -0.02 2.82 16 18 C -0.16 -3.03 6.58 31.61 0.21 -2.83 16 19 C 0.05 0.73 7.63 72.49 0.55 1.28 16 20 O -0.39 -8.26 10.51 -148.98 -1.57 -9.83 16 21 C 0.04 0.85 6.53 72.48 0.47 1.32 16 22 H 0.05 1.65 8.14 -2.38 -0.02 1.63 16 23 H 0.09 2.42 6.19 -2.39 -0.01 2.41 16 24 H 0.09 3.34 5.35 -2.58 -0.01 3.32 16 25 H 0.39 18.33 5.23 -92.70 -0.49 17.85 16 26 H 0.29 14.84 8.30 -92.71 -0.77 14.07 16 27 H 0.07 1.57 7.50 -2.38 -0.02 1.56 16 28 H 0.10 1.56 8.14 -2.39 -0.02 1.54 16 29 H 0.11 1.35 8.14 -2.39 -0.02 1.33 16 30 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 31 H 0.10 1.51 8.14 -2.39 -0.02 1.49 16 32 H 0.09 2.02 8.01 -2.38 -0.02 2.00 16 Total: -1.00 -67.02 268.85 2.48 -64.54 By element: Atomic # 1 Polarization: 27.76 SS G_CDS: 0.61 Total: 28.37 kcal Atomic # 6 Polarization: 25.36 SS G_CDS: 5.16 Total: 30.51 kcal Atomic # 7 Polarization: -96.50 SS G_CDS: -3.52 Total: -100.02 kcal Atomic # 8 Polarization: -62.87 SS G_CDS: -1.67 Total: -64.54 kcal Atomic # 14 Polarization: 39.23 SS G_CDS: 1.90 Total: 41.13 kcal Total: -67.02 2.48 -64.54 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000159339433.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.025 kcal (2) G-P(sol) polarization free energy of solvation -67.023 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.048 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.484 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.539 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds