Wall clock time and date at job start Mon Mar 30 2020 03:45:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86798 * 120.00175 * 2 1 4 4 H 1.48496 * 109.47117 * 269.99969 * 3 2 1 5 5 H 1.48500 * 109.47001 * 30.00032 * 3 2 1 6 6 H 1.48501 * 109.47010 * 149.99898 * 3 2 1 7 7 C 1.38817 * 119.99744 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00221 * 359.97438 * 7 2 1 9 9 N 1.36939 * 119.99653 * 180.02562 * 7 2 1 10 10 C 1.46500 * 120.00037 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47473 * 179.97438 * 10 9 7 12 12 C 1.50701 * 109.47212 * 179.97438 * 11 10 9 13 13 C 1.36106 * 120.12523 * 264.99956 * 12 11 10 14 14 C 1.39321 * 121.05982 * 179.97438 * 13 12 11 15 15 C 1.36174 * 120.87318 * 359.97438 * 14 13 12 16 16 C 1.40384 * 119.61439 * 0.03263 * 15 14 13 17 17 C 1.40776 * 121.38855 * 179.97438 * 16 15 14 18 18 C 1.36585 * 118.14945 * 179.08791 * 17 16 15 19 19 C 1.39336 * 119.93510 * 0.87406 * 18 17 16 20 20 N 1.31079 * 121.75762 * 359.39849 * 19 18 17 21 21 C 1.33688 * 121.31451 * 0.02562 * 20 19 18 22 22 H 0.97001 * 120.00351 * 359.97438 * 1 2 3 23 23 H 0.97004 * 120.00567 * 359.97438 * 9 7 2 24 24 H 1.09002 * 109.47129 * 59.99499 * 10 9 7 25 25 H 1.08998 * 109.46845 * 300.00306 * 10 9 7 26 26 H 1.09002 * 109.47153 * 59.99757 * 11 10 9 27 27 H 1.09001 * 109.46832 * 299.99948 * 11 10 9 28 28 H 1.07994 * 119.47015 * 0.02562 * 13 12 11 29 29 H 1.07997 * 119.55969 * 180.02562 * 14 13 12 30 30 H 1.07996 * 120.18933 * 179.97438 * 15 14 13 31 31 H 1.08002 * 120.92536 * 359.97438 * 17 16 15 32 32 H 1.08003 * 120.03339 * 180.27413 * 18 17 16 33 33 H 1.08000 * 119.12003 * 179.41380 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4000 5 1 1.4476 2.6526 0.7000 6 1 3.5477 1.4401 0.7001 7 6 2.0102 -1.2022 -0.0005 8 1 1.4702 -2.1375 -0.0005 9 7 3.3795 -1.2022 0.0000 10 6 4.1121 -2.4709 0.0000 11 6 5.6163 -2.1914 0.0000 12 6 6.3698 -3.4965 0.0006 13 6 6.8001 -4.0363 1.1736 14 6 7.4978 -5.2420 1.1969 15 6 7.7685 -5.9150 0.0445 16 6 7.3399 -5.3877 -1.1839 17 6 7.5998 -6.0518 -2.3976 18 6 7.1359 -5.4888 -3.5524 19 6 6.4433 -4.2806 -3.5076 20 7 6.2081 -3.6618 -2.3762 21 6 6.6247 -4.1645 -1.2096 22 1 -0.4851 0.8400 0.0004 23 1 3.8646 -0.3622 0.0004 24 1 3.8490 -3.0423 -0.8902 25 1 3.8483 -3.0427 0.8897 26 1 5.8796 -1.6198 0.8900 27 1 5.8796 -1.6198 -0.8900 28 1 6.5967 -3.5222 2.1013 29 1 7.8276 -5.6485 2.1415 30 1 8.3106 -6.8486 0.0753 31 1 8.1384 -6.9878 -2.4139 32 1 7.3142 -5.9748 -4.5003 33 1 6.0907 -3.8424 -4.4295 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000159389674.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:45:18 Heat of formation + Delta-G solvation = 63.447253 kcal Electronic energy + Delta-G solvation = -16199.745437 eV Core-core repulsion = 13611.439805 eV Total energy + Delta-G solvation = -2588.305632 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 242.111 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.86743 -37.32974 -35.46078 -33.73495 -31.83826 -30.57043 -30.52492 -27.78086 -24.39194 -23.67022 -23.52563 -21.46704 -20.49995 -18.27078 -17.53474 -16.93163 -16.65570 -14.85374 -14.76174 -14.37464 -14.29226 -13.92692 -13.68128 -13.41495 -13.00583 -12.95739 -12.54160 -11.88227 -11.72484 -11.44719 -11.28499 -10.95840 -10.84007 -10.57573 -10.29955 -10.05304 -9.51824 -9.37876 -8.81852 -8.77014 -8.11091 -7.13143 -5.68743 -3.03237 0.38870 0.80852 1.98441 2.93146 3.44203 3.47683 3.51141 4.11155 4.32727 4.48961 4.67105 4.68662 4.78350 4.84029 5.06874 5.11619 5.32134 5.38232 5.53768 5.62505 5.75941 5.87476 5.92222 5.95123 6.01648 6.09484 6.29607 6.38081 6.47362 6.50818 6.82587 6.92856 6.96835 7.98593 8.08610 8.50506 9.30272 10.02789 10.23797 11.50043 Molecular weight = 242.11amu Principal moments of inertia in cm(-1) A = 0.031427 B = 0.005431 C = 0.004989 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 890.737903 B = 5154.000379 C = 5610.828623 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C 0.002 3.998 3 Si 0.885 3.115 4 H -0.284 1.284 5 H -0.292 1.292 6 H -0.277 1.277 7 C -0.239 4.239 8 H 0.089 0.911 9 N -0.756 5.756 10 C 0.170 3.830 11 C -0.088 4.088 12 C -0.036 4.036 13 C -0.110 4.110 14 C -0.106 4.106 15 C -0.113 4.113 16 C -0.101 4.101 17 C -0.065 4.065 18 C -0.176 4.176 19 C 0.124 3.876 20 N -0.455 5.455 21 C 0.129 3.871 22 H 0.258 0.742 23 H 0.360 0.640 24 H 0.031 0.969 25 H 0.023 0.977 26 H 0.070 0.930 27 H 0.082 0.918 28 H 0.131 0.869 29 H 0.126 0.874 30 H 0.126 0.874 31 H 0.135 0.865 32 H 0.134 0.866 33 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.745 -12.902 -2.898 23.763 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.586 5.586 2 C -0.193 4.193 3 Si 0.716 3.284 4 H -0.211 1.211 5 H -0.218 1.218 6 H -0.203 1.203 7 C -0.369 4.369 8 H 0.107 0.893 9 N -0.401 5.401 10 C 0.043 3.957 11 C -0.126 4.126 12 C -0.037 4.037 13 C -0.130 4.130 14 C -0.124 4.124 15 C -0.132 4.132 16 C -0.103 4.103 17 C -0.091 4.091 18 C -0.195 4.195 19 C -0.049 4.049 20 N -0.162 5.162 21 C 0.008 3.992 22 H 0.068 0.932 23 H 0.193 0.807 24 H 0.049 0.951 25 H 0.041 0.959 26 H 0.089 0.911 27 H 0.101 0.899 28 H 0.149 0.851 29 H 0.144 0.856 30 H 0.144 0.856 31 H 0.153 0.847 32 H 0.152 0.848 33 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 19.039 -12.166 -2.774 22.763 hybrid contribution 0.972 0.286 -0.081 1.016 sum 20.010 -11.879 -2.854 23.445 Atomic orbital electron populations 1.69705 1.05100 1.25712 1.58045 1.24658 0.95240 0.97168 1.02249 0.86520 0.79181 0.84906 0.77808 1.21056 1.21799 1.20326 1.19073 0.80663 0.94727 1.42468 0.89334 1.42695 1.04012 1.02235 1.91189 1.20493 0.87409 0.89206 0.98591 1.20768 0.96010 0.92795 1.03042 1.19653 0.96485 0.96820 0.90772 1.20867 0.98169 0.96009 0.97924 1.20903 0.98099 0.95060 0.98337 1.20882 1.00865 1.00012 0.91453 1.18834 1.00463 0.96228 0.94741 1.21413 0.97108 0.98945 0.91614 1.21891 1.00504 0.97823 0.99331 1.23012 0.93635 0.91794 0.96439 1.68108 1.17357 1.32993 0.97757 1.18783 0.95994 0.92020 0.92424 0.93153 0.80702 0.95110 0.95948 0.91145 0.89900 0.85120 0.85639 0.85603 0.84729 0.84771 0.82481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -30.42 13.97 55.49 0.78 -29.65 16 2 C 0.00 0.06 5.50 -17.43 -0.10 -0.03 16 3 Si 0.89 22.94 27.74 -169.99 -4.71 18.23 16 4 H -0.28 -7.30 7.11 56.52 0.40 -6.90 16 5 H -0.29 -7.58 7.11 56.52 0.40 -7.17 16 6 H -0.28 -6.75 6.52 56.52 0.37 -6.38 16 7 C -0.24 -7.17 10.47 -15.06 -0.16 -7.33 16 8 H 0.09 2.83 8.06 -52.49 -0.42 2.41 16 9 N -0.76 -19.34 5.41 -59.91 -0.32 -19.67 16 10 C 0.17 3.67 6.24 -4.04 -0.03 3.64 16 11 C -0.09 -1.55 5.18 -27.88 -0.14 -1.69 16 12 C -0.04 -0.56 5.14 -104.51 -0.54 -1.10 16 13 C -0.11 -1.42 9.57 -39.94 -0.38 -1.80 16 14 C -0.11 -1.14 9.95 -39.92 -0.40 -1.54 16 15 C -0.11 -1.21 9.78 -39.52 -0.39 -1.60 16 16 C -0.10 -1.29 5.74 -106.80 -0.61 -1.90 16 17 C -0.06 -0.66 9.90 -39.22 -0.39 -1.05 16 18 C -0.18 -1.74 10.03 -39.77 -0.40 -2.13 16 19 C 0.12 1.54 11.14 -17.46 -0.19 1.35 16 20 N -0.46 -7.32 9.52 -10.97 -0.10 -7.43 16 21 C 0.13 2.01 6.58 -84.85 -0.56 1.45 16 22 H 0.26 7.95 8.31 -40.82 -0.34 7.61 16 23 H 0.36 8.91 5.53 -40.82 -0.23 8.68 16 24 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 25 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 26 H 0.07 1.14 8.04 -51.93 -0.42 0.72 16 27 H 0.08 1.51 7.73 -51.93 -0.40 1.11 16 28 H 0.13 1.49 8.04 -52.49 -0.42 1.06 16 29 H 0.13 0.98 8.06 -52.49 -0.42 0.56 16 30 H 0.13 0.96 8.06 -52.49 -0.42 0.54 16 31 H 0.13 0.93 8.06 -52.49 -0.42 0.51 16 32 H 0.13 0.88 8.06 -52.48 -0.42 0.46 16 33 H 0.16 1.54 8.06 -52.49 -0.42 1.12 16 LS Contribution 284.87 15.07 4.29 4.29 Total: -1.00 -34.90 284.87 -8.37 -43.27 By element: Atomic # 1 Polarization: 8.69 SS G_CDS: -4.02 Total: 4.68 kcal Atomic # 6 Polarization: -9.44 SS G_CDS: -4.28 Total: -13.72 kcal Atomic # 7 Polarization: -57.09 SS G_CDS: 0.35 Total: -56.74 kcal Atomic # 14 Polarization: 22.94 SS G_CDS: -4.71 Total: 18.23 kcal Total LS contribution 4.29 Total: 4.29 kcal Total: -34.90 -8.37 -43.27 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000159389674.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.717 kcal (2) G-P(sol) polarization free energy of solvation -34.897 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.820 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.372 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.269 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.447 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds