Wall clock time and date at job start Mon Mar 30 2020 03:45:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86798 * 120.00175 * 2 1 4 4 H 1.48496 * 109.47117 * 269.99969 * 3 2 1 5 5 H 1.48500 * 109.47001 * 30.00032 * 3 2 1 6 6 H 1.48501 * 109.47010 * 149.99898 * 3 2 1 7 7 C 1.38817 * 119.99744 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00221 * 359.97438 * 7 2 1 9 9 N 1.36939 * 119.99653 * 180.02562 * 7 2 1 10 10 C 1.46500 * 120.00037 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47473 * 179.97438 * 10 9 7 12 12 C 1.50701 * 109.47212 * 179.97438 * 11 10 9 13 13 C 1.36106 * 120.12523 * 264.99956 * 12 11 10 14 14 C 1.39321 * 121.05982 * 179.97438 * 13 12 11 15 15 C 1.36174 * 120.87318 * 359.97438 * 14 13 12 16 16 C 1.40384 * 119.61439 * 0.03263 * 15 14 13 17 17 C 1.40776 * 121.38855 * 179.97438 * 16 15 14 18 18 C 1.36585 * 118.14945 * 179.08791 * 17 16 15 19 19 C 1.39336 * 119.93510 * 0.87406 * 18 17 16 20 20 N 1.31079 * 121.75762 * 359.39849 * 19 18 17 21 21 C 1.33688 * 121.31451 * 0.02562 * 20 19 18 22 22 H 0.97001 * 120.00351 * 359.97438 * 1 2 3 23 23 H 0.97004 * 120.00567 * 359.97438 * 9 7 2 24 24 H 1.09002 * 109.47129 * 59.99499 * 10 9 7 25 25 H 1.08998 * 109.46845 * 300.00306 * 10 9 7 26 26 H 1.09002 * 109.47153 * 59.99757 * 11 10 9 27 27 H 1.09001 * 109.46832 * 299.99948 * 11 10 9 28 28 H 1.07994 * 119.47015 * 0.02562 * 13 12 11 29 29 H 1.07997 * 119.55969 * 180.02562 * 14 13 12 30 30 H 1.07996 * 120.18933 * 179.97438 * 15 14 13 31 31 H 1.08002 * 120.92536 * 359.97438 * 17 16 15 32 32 H 1.08003 * 120.03339 * 180.27413 * 18 17 16 33 33 H 1.08000 * 119.12003 * 179.41380 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4000 5 1 1.4476 2.6526 0.7000 6 1 3.5477 1.4401 0.7001 7 6 2.0102 -1.2022 -0.0005 8 1 1.4702 -2.1375 -0.0005 9 7 3.3795 -1.2022 0.0000 10 6 4.1121 -2.4709 0.0000 11 6 5.6163 -2.1914 0.0000 12 6 6.3698 -3.4965 0.0006 13 6 6.8001 -4.0363 1.1736 14 6 7.4978 -5.2420 1.1969 15 6 7.7685 -5.9150 0.0445 16 6 7.3399 -5.3877 -1.1839 17 6 7.5998 -6.0518 -2.3976 18 6 7.1359 -5.4888 -3.5524 19 6 6.4433 -4.2806 -3.5076 20 7 6.2081 -3.6618 -2.3762 21 6 6.6247 -4.1645 -1.2096 22 1 -0.4851 0.8400 0.0004 23 1 3.8646 -0.3622 0.0004 24 1 3.8490 -3.0423 -0.8902 25 1 3.8483 -3.0427 0.8897 26 1 5.8796 -1.6198 0.8900 27 1 5.8796 -1.6198 -0.8900 28 1 6.5967 -3.5222 2.1013 29 1 7.8276 -5.6485 2.1415 30 1 8.3106 -6.8486 0.0753 31 1 8.1384 -6.9878 -2.4139 32 1 7.3142 -5.9748 -4.5003 33 1 6.0907 -3.8424 -4.4295 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000159389674.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:45:18 Heat of formation + Delta-G solvation = 40.393035 kcal Electronic energy + Delta-G solvation = -16200.745143 eV Core-core repulsion = 13611.439805 eV Total energy + Delta-G solvation = -2589.305338 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 242.111 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.77531 -38.33090 -37.12123 -35.11525 -33.61519 -32.04135 -31.42265 -29.24912 -25.78314 -24.95902 -24.46293 -23.30808 -21.68847 -19.69820 -19.13086 -17.85560 -17.60486 -16.66694 -15.96657 -15.83846 -15.35553 -15.19907 -15.08872 -14.76204 -14.60312 -13.97679 -13.83404 -13.31441 -13.10409 -12.98220 -12.50191 -12.47439 -12.26198 -12.09739 -11.99721 -11.84264 -11.28070 -11.01080 -10.31168 -9.68291 -9.35132 -9.06614 -8.06053 -5.40685 -0.48479 -0.08158 1.08274 1.35972 1.40619 1.47972 2.06145 2.46495 3.16533 3.24826 3.40266 3.51675 3.77098 3.86846 4.01204 4.10795 4.23319 4.31510 4.35341 4.39879 4.54555 4.61594 4.70330 4.85649 5.05045 5.11950 5.15704 5.24313 5.26060 5.50351 5.59529 5.68285 5.70499 6.00325 6.17653 7.03163 7.07367 7.77868 8.00610 9.15732 Molecular weight = 242.11amu Principal moments of inertia in cm(-1) A = 0.031427 B = 0.005431 C = 0.004989 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 890.737903 B = 5154.000379 C = 5610.828623 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.983 5.983 2 C -0.062 4.062 3 Si 0.960 3.040 4 H -0.277 1.277 5 H -0.289 1.289 6 H -0.251 1.251 7 C -0.242 4.242 8 H 0.050 0.950 9 N -0.757 5.757 10 C 0.175 3.825 11 C -0.070 4.070 12 C -0.079 4.079 13 C -0.103 4.103 14 C -0.115 4.115 15 C -0.099 4.099 16 C -0.122 4.122 17 C -0.058 4.058 18 C -0.175 4.175 19 C 0.113 3.887 20 N -0.510 5.510 21 C 0.101 3.899 22 H 0.260 0.740 23 H 0.367 0.633 24 H 0.009 0.991 25 H 0.019 0.981 26 H 0.082 0.918 27 H 0.068 0.932 28 H 0.141 0.859 29 H 0.160 0.840 30 H 0.165 0.835 31 H 0.176 0.824 32 H 0.172 0.828 33 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.863 -14.121 -2.765 27.014 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.634 5.634 2 C -0.253 4.253 3 Si 0.786 3.214 4 H -0.204 1.204 5 H -0.215 1.215 6 H -0.175 1.175 7 C -0.373 4.373 8 H 0.068 0.932 9 N -0.403 5.403 10 C 0.049 3.951 11 C -0.108 4.108 12 C -0.080 4.080 13 C -0.123 4.123 14 C -0.132 4.132 15 C -0.117 4.117 16 C -0.124 4.124 17 C -0.084 4.084 18 C -0.194 4.194 19 C -0.059 4.059 20 N -0.219 5.219 21 C -0.020 4.020 22 H 0.069 0.931 23 H 0.201 0.799 24 H 0.027 0.973 25 H 0.037 0.963 26 H 0.100 0.900 27 H 0.087 0.913 28 H 0.159 0.841 29 H 0.178 0.822 30 H 0.183 0.817 31 H 0.193 0.807 32 H 0.190 0.810 33 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges 22.198 -13.412 -2.639 26.069 hybrid contribution -0.003 0.483 -0.183 0.517 sum 22.195 -12.928 -2.822 25.840 Atomic orbital electron populations 1.69889 1.07168 1.26920 1.59389 1.25548 0.96219 1.01412 1.02123 0.85339 0.78692 0.79095 0.78265 1.20353 1.21526 1.17515 1.19021 0.82638 0.93531 1.42087 0.93164 1.42682 1.02584 1.04004 1.90988 1.20509 0.90236 0.87244 0.97126 1.20474 0.92897 0.94567 1.02814 1.19566 0.99279 0.96832 0.92307 1.21138 0.97133 0.96710 0.97309 1.21266 0.97680 0.94178 1.00104 1.21374 0.99208 1.00759 0.90393 1.19197 1.00609 0.95680 0.96900 1.21915 0.96167 0.99795 0.90489 1.22245 0.99287 0.96705 1.01156 1.23495 0.93456 0.92896 0.96100 1.68042 1.19705 1.35112 0.99025 1.19030 0.97216 0.93533 0.92201 0.93112 0.79946 0.97327 0.96282 0.89970 0.91310 0.84091 0.82229 0.81725 0.80678 0.81020 0.81099 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -65.61 13.97 21.65 0.30 -65.30 16 2 C -0.06 -3.83 5.50 84.86 0.47 -3.36 16 3 Si 0.96 47.62 27.74 68.60 1.90 49.52 16 4 H -0.28 -13.45 7.11 99.48 0.71 -12.74 16 5 H -0.29 -14.18 7.11 99.48 0.71 -13.47 16 6 H -0.25 -11.25 6.52 99.48 0.65 -10.60 16 7 C -0.24 -15.01 10.47 84.03 0.88 -14.12 16 8 H 0.05 3.42 8.06 -2.91 -0.02 3.39 16 9 N -0.76 -39.49 5.41 -343.46 -1.86 -41.34 16 10 C 0.18 7.85 6.24 86.38 0.54 8.39 16 11 C -0.07 -2.50 5.18 29.85 0.15 -2.35 16 12 C -0.08 -2.47 5.14 -19.79 -0.10 -2.57 16 13 C -0.10 -2.54 9.57 22.03 0.21 -2.33 16 14 C -0.11 -2.12 9.95 22.05 0.22 -1.90 16 15 C -0.10 -1.76 9.78 22.31 0.22 -1.54 16 16 C -0.12 -2.86 5.74 -21.28 -0.12 -2.98 16 17 C -0.06 -0.99 9.90 22.50 0.22 -0.76 16 18 C -0.17 -3.01 10.03 22.15 0.22 -2.79 16 19 C 0.11 2.77 11.14 85.07 0.95 3.72 16 20 N -0.51 -16.94 9.52 -188.63 -1.79 -18.74 16 21 C 0.10 3.16 6.58 40.29 0.27 3.42 16 22 H 0.26 16.35 8.31 -92.71 -0.77 15.58 16 23 H 0.37 18.00 5.53 -92.71 -0.51 17.49 16 24 H 0.01 0.42 8.14 -2.39 -0.02 0.40 16 25 H 0.02 0.87 8.14 -2.39 -0.02 0.85 16 26 H 0.08 2.65 8.04 -2.39 -0.02 2.63 16 27 H 0.07 2.61 7.73 -2.39 -0.02 2.59 16 28 H 0.14 3.01 8.04 -2.91 -0.02 2.99 16 29 H 0.16 1.81 8.06 -2.91 -0.02 1.78 16 30 H 0.17 1.59 8.06 -2.91 -0.02 1.57 16 31 H 0.18 1.47 8.06 -2.91 -0.02 1.45 16 32 H 0.17 1.57 8.06 -2.91 -0.02 1.55 16 33 H 0.17 3.35 8.06 -2.91 -0.02 3.33 16 Total: -1.00 -79.48 284.87 3.22 -76.27 By element: Atomic # 1 Polarization: 18.24 SS G_CDS: 0.54 Total: 18.78 kcal Atomic # 6 Polarization: -23.30 SS G_CDS: 4.12 Total: -19.18 kcal Atomic # 7 Polarization: -122.03 SS G_CDS: -3.35 Total: -125.38 kcal Atomic # 14 Polarization: 47.62 SS G_CDS: 1.90 Total: 49.52 kcal Total: -79.48 3.22 -76.27 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000159389674.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.659 kcal (2) G-P(sol) polarization free energy of solvation -79.481 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.178 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.215 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.266 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.393 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds