Wall clock time and date at job start Mon Mar 30 2020 03:57:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 109.47016 * 2 1 4 4 N 1.46498 * 109.46794 * 119.99479 * 2 1 3 5 5 C 1.46498 * 120.00719 * 305.03577 * 4 2 1 6 6 C 1.50704 * 109.47060 * 270.00194 * 5 4 2 7 7 H 1.07999 * 119.99887 * 359.97438 * 6 5 4 8 8 C 1.37872 * 119.99968 * 179.97438 * 6 5 4 9 9 N 1.31512 * 120.00110 * 0.02562 * 8 6 5 10 10 Si 1.86798 * 120.00141 * 179.97438 * 8 6 5 11 11 H 1.48498 * 109.47384 * 89.99962 * 10 8 6 12 12 H 1.48498 * 109.47399 * 210.00050 * 10 8 6 13 13 H 1.48504 * 109.46924 * 330.00123 * 10 8 6 14 14 C 1.34779 * 119.99480 * 125.03244 * 4 2 1 15 15 S 1.71208 * 119.99837 * 185.26381 * 14 4 2 16 16 N 1.34779 * 120.00087 * 5.27310 * 14 4 2 17 17 C 1.46497 * 119.99823 * 174.96930 * 16 14 4 18 18 C 1.53002 * 117.51721 * 136.28017 * 17 16 14 19 19 C 1.53004 * 117.49913 * 204.91041 * 17 16 14 20 20 H 1.09005 * 109.47037 * 295.11394 * 1 2 3 21 21 H 1.09005 * 109.47250 * 55.11149 * 1 2 3 22 22 H 1.09000 * 109.46893 * 175.11487 * 1 2 3 23 23 H 1.08995 * 109.47210 * 239.99928 * 2 1 3 24 24 H 1.08997 * 109.46962 * 184.92611 * 3 2 1 25 25 H 1.09004 * 109.47171 * 304.92571 * 3 2 1 26 26 H 1.08997 * 109.47421 * 64.92690 * 3 2 1 27 27 H 1.09004 * 109.46789 * 29.99933 * 5 4 2 28 28 H 1.08998 * 109.47587 * 149.99839 * 5 4 2 29 29 H 0.97002 * 120.00597 * 179.97438 * 9 8 6 30 30 H 0.96992 * 119.99774 * 354.96683 * 16 14 4 31 31 H 1.08998 * 115.55460 * 350.57508 * 17 16 14 32 32 H 1.09003 * 117.50124 * 214.96854 * 18 17 16 33 33 H 1.08994 * 117.50041 * 359.97438 * 18 17 16 34 34 H 1.08998 * 117.49674 * 359.97361 * 19 17 16 35 35 H 1.08995 * 117.50459 * 144.97596 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6905 1.1962 5 6 1.5758 -0.2576 2.5240 6 6 2.5209 0.7912 3.0512 7 1 3.3668 1.1036 2.4569 8 6 2.3057 1.3518 4.2923 9 7 1.2759 0.9710 5.0162 10 14 3.4776 2.6513 4.9462 11 1 3.0059 3.9969 4.5315 12 1 3.5215 2.5773 6.4286 13 1 4.8370 2.4126 4.3981 14 6 2.8746 -1.7242 1.0752 15 16 3.3401 -2.6168 2.4600 16 7 3.3646 -2.0552 -0.1360 17 6 4.3785 -3.1060 -0.2537 18 6 4.2109 -4.1269 -1.3810 19 6 5.3048 -3.0608 -1.4707 20 1 -0.3633 0.4362 0.9306 21 1 -0.3634 0.5878 -0.8430 22 1 -0.3633 -1.0239 -0.0875 23 1 1.8934 -0.5138 -0.8899 24 1 3.1264 1.4437 -0.0882 25 1 1.6064 1.9812 -0.8426 26 1 1.7505 1.9302 0.9308 27 1 0.5716 0.1606 2.4538 28 1 1.5671 -1.1120 3.2007 29 1 1.1246 1.3651 5.8896 30 1 3.0458 -1.5976 -0.9296 31 1 4.8005 -3.4597 0.6869 32 1 4.5226 -5.1522 -1.1820 33 1 3.3459 -4.0170 -2.0350 34 1 5.1594 -2.2494 -2.1839 35 1 6.3361 -3.3844 -1.3306 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000164240949.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:57:46 Heat of formation + Delta-G solvation = 47.047752 kcal Electronic energy + Delta-G solvation = -15904.184494 eV Core-core repulsion = 13450.611678 eV Total energy + Delta-G solvation = -2453.572817 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 242.115 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.38507 -37.45319 -33.86592 -32.94279 -31.34432 -27.36001 -27.00876 -23.71991 -23.24109 -22.44480 -21.68770 -19.54729 -17.84265 -16.98542 -16.42453 -15.14965 -14.75766 -14.41911 -14.25779 -13.98450 -13.42887 -12.77381 -12.69875 -12.40408 -12.07429 -11.77048 -11.65801 -11.37622 -11.28805 -10.98203 -10.73648 -10.60788 -10.49889 -10.40894 -10.17403 -9.94876 -9.47760 -8.42266 -8.07707 -6.89564 -6.36744 -6.03058 -4.05836 2.15778 2.70910 3.30832 3.33151 3.39595 3.44067 3.77058 3.89971 4.45950 4.74464 4.86009 4.93169 5.00665 5.21015 5.27804 5.32307 5.52377 5.72887 5.77222 5.84074 5.93193 5.99019 6.02797 6.10155 6.34055 6.59767 6.69055 6.78560 7.25820 7.54542 7.61373 7.92657 8.04481 8.18936 8.92682 9.55902 11.05412 Molecular weight = 242.11amu Principal moments of inertia in cm(-1) A = 0.023776 B = 0.007877 C = 0.007027 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1177.376399 B = 3554.011844 C = 3983.411325 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.121 3.879 3 C -0.161 4.161 4 N -0.535 5.535 5 C 0.234 3.766 6 C -0.515 4.515 7 H 0.057 0.943 8 C 0.067 3.933 9 N -0.890 5.890 10 Si 0.896 3.104 11 H -0.283 1.283 12 H -0.285 1.285 13 H -0.274 1.274 14 C 0.569 3.431 15 S -0.660 6.660 16 N -0.681 5.681 17 C 0.093 3.907 18 C -0.192 4.192 19 C -0.193 4.193 20 H 0.079 0.921 21 H 0.065 0.935 22 H 0.055 0.945 23 H 0.066 0.934 24 H 0.053 0.947 25 H 0.056 0.944 26 H 0.092 0.908 27 H 0.040 0.960 28 H 0.080 0.920 29 H 0.263 0.737 30 H 0.389 0.611 31 H 0.164 0.836 32 H 0.104 0.896 33 H 0.091 0.909 34 H 0.091 0.909 35 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.329 -2.713 -15.424 15.717 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.014 3.986 3 C -0.219 4.219 4 N -0.240 5.240 5 C 0.116 3.884 6 C -0.554 4.554 7 H 0.075 0.925 8 C -0.136 4.136 9 N -0.528 5.528 10 Si 0.724 3.276 11 H -0.209 1.209 12 H -0.210 1.210 13 H -0.199 1.199 14 C 0.210 3.790 15 S -0.530 6.530 16 N -0.315 5.315 17 C -0.015 4.015 18 C -0.231 4.231 19 C -0.232 4.232 20 H 0.097 0.903 21 H 0.084 0.916 22 H 0.074 0.926 23 H 0.084 0.916 24 H 0.072 0.928 25 H 0.075 0.925 26 H 0.111 0.889 27 H 0.058 0.942 28 H 0.098 0.902 29 H 0.073 0.927 30 H 0.228 0.772 31 H 0.181 0.819 32 H 0.122 0.878 33 H 0.110 0.890 34 H 0.110 0.890 35 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 1.478 -3.183 -14.292 14.716 hybrid contribution 0.244 1.462 -0.856 1.712 sum 1.721 -1.720 -15.147 15.341 Atomic orbital electron populations 1.22160 0.93973 1.02179 1.03663 1.21241 0.95485 0.94603 0.87236 1.22202 1.00971 0.94791 1.03971 1.47941 1.39704 1.25782 1.10585 1.19970 0.95205 0.97898 0.75371 1.21160 1.11110 1.20732 1.02442 0.92505 1.24824 0.95449 0.97093 0.96220 1.69918 1.28282 1.42693 1.11953 0.86523 0.81486 0.81230 0.78352 1.20885 1.21033 1.19895 1.22103 0.82563 0.84834 0.89531 1.93067 1.74853 1.56986 1.28101 1.44356 1.41775 1.39202 1.06188 1.22072 0.91976 0.90746 0.96671 1.23384 1.00588 0.96372 1.02795 1.23380 0.96861 1.01674 1.01239 0.90261 0.91578 0.92616 0.91622 0.92816 0.92487 0.88868 0.94212 0.90185 0.92693 0.77223 0.81907 0.87796 0.89009 0.89005 0.87690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.22 9.18 37.16 0.34 -1.88 16 2 C 0.12 1.84 3.21 -67.93 -0.22 1.62 16 3 C -0.16 -2.44 8.77 37.16 0.33 -2.12 16 4 N -0.54 -10.72 2.39 -169.48 -0.40 -11.12 16 5 C 0.23 5.79 4.55 -5.19 -0.02 5.77 16 6 C -0.52 -13.88 7.71 -34.44 -0.27 -14.14 16 7 H 0.06 1.55 7.59 -52.49 -0.40 1.15 16 8 C 0.07 1.86 5.46 -17.82 -0.10 1.76 16 9 N -0.89 -25.89 13.29 55.43 0.74 -25.15 16 10 Si 0.90 21.72 29.54 -169.99 -5.02 16.70 16 11 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 12 H -0.28 -6.93 7.11 56.52 0.40 -6.52 16 13 H -0.27 -6.71 7.11 56.52 0.40 -6.31 16 14 C 0.57 11.57 7.68 -86.91 -0.67 10.91 16 15 S -0.66 -16.42 26.51 -107.50 -2.85 -19.27 16 16 N -0.68 -10.54 5.47 -55.52 -0.30 -10.84 16 17 C 0.09 1.29 6.24 -67.93 -0.42 0.87 16 18 C -0.19 -2.03 10.46 -26.73 -0.28 -2.31 16 19 C -0.19 -1.98 10.46 -26.73 -0.28 -2.26 16 20 H 0.08 1.27 6.30 -51.93 -0.33 0.94 16 21 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 22 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 23 H 0.07 0.81 5.52 -51.93 -0.29 0.53 16 24 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 25 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 26 H 0.09 1.71 6.58 -51.93 -0.34 1.37 16 27 H 0.04 0.99 6.08 -51.93 -0.32 0.68 16 28 H 0.08 2.30 6.46 -51.93 -0.34 1.96 16 29 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 30 H 0.39 4.92 6.24 -40.82 -0.25 4.66 16 31 H 0.16 2.70 6.49 -51.93 -0.34 2.37 16 32 H 0.10 0.99 8.14 -51.93 -0.42 0.57 16 33 H 0.09 0.90 8.14 -51.93 -0.42 0.47 16 34 H 0.09 0.86 8.14 -51.93 -0.42 0.43 16 35 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16 LS Contribution 296.94 15.07 4.47 4.47 Total: -1.00 -32.05 296.94 -10.07 -42.12 By element: Atomic # 1 Polarization: 9.99 SS G_CDS: -5.11 Total: 4.88 kcal Atomic # 6 Polarization: -0.19 SS G_CDS: -1.59 Total: -1.78 kcal Atomic # 7 Polarization: -47.14 SS G_CDS: 0.03 Total: -47.12 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.70 kcal Atomic # 16 Polarization: -16.42 SS G_CDS: -2.85 Total: -19.27 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -32.05 -10.07 -42.12 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000164240949.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.165 kcal (2) G-P(sol) polarization free energy of solvation -32.047 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.117 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.117 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.048 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds