Wall clock time and date at job start Mon Mar 30 2020 03:57:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 109.47016 * 2 1 4 4 N 1.46498 * 109.46794 * 119.99479 * 2 1 3 5 5 C 1.46498 * 120.00719 * 305.03577 * 4 2 1 6 6 C 1.50704 * 109.47060 * 270.00194 * 5 4 2 7 7 H 1.07999 * 119.99887 * 359.97438 * 6 5 4 8 8 C 1.37872 * 119.99968 * 179.97438 * 6 5 4 9 9 N 1.31512 * 120.00110 * 0.02562 * 8 6 5 10 10 Si 1.86798 * 120.00141 * 179.97438 * 8 6 5 11 11 H 1.48498 * 109.47384 * 89.99962 * 10 8 6 12 12 H 1.48498 * 109.47399 * 210.00050 * 10 8 6 13 13 H 1.48504 * 109.46924 * 330.00123 * 10 8 6 14 14 C 1.34779 * 119.99480 * 125.03244 * 4 2 1 15 15 S 1.71208 * 119.99837 * 185.26381 * 14 4 2 16 16 N 1.34779 * 120.00087 * 5.27310 * 14 4 2 17 17 C 1.46497 * 119.99823 * 174.96930 * 16 14 4 18 18 C 1.53002 * 117.51721 * 136.28017 * 17 16 14 19 19 C 1.53004 * 117.49913 * 204.91041 * 17 16 14 20 20 H 1.09005 * 109.47037 * 295.11394 * 1 2 3 21 21 H 1.09005 * 109.47250 * 55.11149 * 1 2 3 22 22 H 1.09000 * 109.46893 * 175.11487 * 1 2 3 23 23 H 1.08995 * 109.47210 * 239.99928 * 2 1 3 24 24 H 1.08997 * 109.46962 * 184.92611 * 3 2 1 25 25 H 1.09004 * 109.47171 * 304.92571 * 3 2 1 26 26 H 1.08997 * 109.47421 * 64.92690 * 3 2 1 27 27 H 1.09004 * 109.46789 * 29.99933 * 5 4 2 28 28 H 1.08998 * 109.47587 * 149.99839 * 5 4 2 29 29 H 0.97002 * 120.00597 * 179.97438 * 9 8 6 30 30 H 0.96992 * 119.99774 * 354.96683 * 16 14 4 31 31 H 1.08998 * 115.55460 * 350.57508 * 17 16 14 32 32 H 1.09003 * 117.50124 * 214.96854 * 18 17 16 33 33 H 1.08994 * 117.50041 * 359.97438 * 18 17 16 34 34 H 1.08998 * 117.49674 * 359.97361 * 19 17 16 35 35 H 1.08995 * 117.50459 * 144.97596 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6905 1.1962 5 6 1.5758 -0.2576 2.5240 6 6 2.5209 0.7912 3.0512 7 1 3.3668 1.1036 2.4569 8 6 2.3057 1.3518 4.2923 9 7 1.2759 0.9710 5.0162 10 14 3.4776 2.6513 4.9462 11 1 3.0059 3.9969 4.5315 12 1 3.5215 2.5773 6.4286 13 1 4.8370 2.4126 4.3981 14 6 2.8746 -1.7242 1.0752 15 16 3.3401 -2.6168 2.4600 16 7 3.3646 -2.0552 -0.1360 17 6 4.3785 -3.1060 -0.2537 18 6 4.2109 -4.1269 -1.3810 19 6 5.3048 -3.0608 -1.4707 20 1 -0.3633 0.4362 0.9306 21 1 -0.3634 0.5878 -0.8430 22 1 -0.3633 -1.0239 -0.0875 23 1 1.8934 -0.5138 -0.8899 24 1 3.1264 1.4437 -0.0882 25 1 1.6064 1.9812 -0.8426 26 1 1.7505 1.9302 0.9308 27 1 0.5716 0.1606 2.4538 28 1 1.5671 -1.1120 3.2007 29 1 1.1246 1.3651 5.8896 30 1 3.0458 -1.5976 -0.9296 31 1 4.8005 -3.4597 0.6869 32 1 4.5226 -5.1522 -1.1820 33 1 3.3459 -4.0170 -2.0350 34 1 5.1594 -2.2494 -2.1839 35 1 6.3361 -3.3844 -1.3306 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000164240949.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:57:46 Heat of formation + Delta-G solvation = 27.438593 kcal Electronic energy + Delta-G solvation = -15905.034811 eV Core-core repulsion = 13450.611678 eV Total energy + Delta-G solvation = -2454.423133 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 242.115 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.84971 -38.64227 -35.27156 -34.78138 -32.92163 -29.29381 -28.18506 -25.40219 -24.91882 -23.26858 -22.96349 -20.99581 -19.26853 -18.70440 -18.19947 -16.73508 -16.22968 -16.02332 -15.58313 -15.37255 -14.83185 -14.28872 -13.96663 -13.79465 -13.40996 -13.30822 -13.10843 -12.85362 -12.57468 -12.47208 -12.40926 -12.25382 -11.97684 -11.82080 -11.69403 -11.43092 -11.24878 -10.56373 -9.50783 -8.80129 -8.31273 -8.15867 -6.25115 0.53555 1.08894 1.36913 1.41926 1.50282 1.76377 2.32893 2.45625 2.96349 3.16704 3.63508 3.76602 4.00717 4.06195 4.07294 4.14371 4.50099 4.72655 4.74727 4.75932 4.84493 4.88772 4.98569 5.02342 5.14872 5.21141 5.36197 5.40713 5.47577 5.69991 5.83428 5.99721 6.09292 6.52564 6.79160 7.39639 8.91974 Molecular weight = 242.11amu Principal moments of inertia in cm(-1) A = 0.023776 B = 0.007877 C = 0.007027 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1177.376399 B = 3554.011844 C = 3983.411325 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.113 3.887 3 C -0.156 4.156 4 N -0.537 5.537 5 C 0.254 3.746 6 C -0.514 4.514 7 H 0.051 0.949 8 C 0.015 3.985 9 N -0.925 5.925 10 Si 0.957 3.043 11 H -0.264 1.264 12 H -0.286 1.286 13 H -0.278 1.278 14 C 0.587 3.413 15 S -0.767 6.767 16 N -0.649 5.649 17 C 0.042 3.958 18 C -0.169 4.169 19 C -0.162 4.162 20 H 0.048 0.952 21 H 0.106 0.894 22 H 0.058 0.942 23 H 0.106 0.894 24 H 0.047 0.953 25 H 0.099 0.901 26 H 0.055 0.945 27 H 0.036 0.964 28 H 0.035 0.965 29 H 0.264 0.736 30 H 0.409 0.591 31 H 0.129 0.871 32 H 0.113 0.887 33 H 0.108 0.892 34 H 0.112 0.888 35 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.791 -1.785 -19.157 19.323 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.009 3.991 3 C -0.214 4.214 4 N -0.241 5.241 5 C 0.134 3.866 6 C -0.553 4.553 7 H 0.069 0.931 8 C -0.185 4.185 9 N -0.565 5.565 10 Si 0.783 3.217 11 H -0.189 1.189 12 H -0.212 1.212 13 H -0.203 1.203 14 C 0.223 3.777 15 S -0.639 6.639 16 N -0.283 5.283 17 C -0.064 4.064 18 C -0.208 4.208 19 C -0.201 4.201 20 H 0.067 0.933 21 H 0.124 0.876 22 H 0.077 0.923 23 H 0.123 0.877 24 H 0.066 0.934 25 H 0.118 0.882 26 H 0.074 0.926 27 H 0.054 0.946 28 H 0.053 0.947 29 H 0.073 0.927 30 H 0.251 0.749 31 H 0.147 0.853 32 H 0.131 0.869 33 H 0.127 0.873 34 H 0.131 0.869 35 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 1.950 -2.249 -18.120 18.363 hybrid contribution 0.102 1.140 0.131 1.152 sum 2.052 -1.110 -17.988 18.139 Atomic orbital electron populations 1.22141 0.92634 1.02903 1.03785 1.21708 0.96622 0.94691 0.86103 1.22145 1.00818 0.94629 1.03799 1.47790 1.39577 1.25892 1.10837 1.19334 0.94780 0.95485 0.77048 1.21336 1.10818 1.20724 1.02438 0.93118 1.25620 0.96939 0.99239 0.96658 1.70033 1.29975 1.44132 1.12339 0.85570 0.79146 0.79597 0.77416 1.18874 1.21179 1.20268 1.21464 0.82347 0.84265 0.89637 1.93247 1.78049 1.60228 1.32356 1.44236 1.40522 1.38701 1.04817 1.22140 0.94042 0.92909 0.97289 1.23483 1.01199 0.96400 0.99710 1.23509 0.97097 1.01611 0.97843 0.93256 0.87554 0.92321 0.87673 0.93421 0.88221 0.92596 0.94582 0.94662 0.92675 0.74875 0.85339 0.86882 0.87321 0.86937 0.86442 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.90 9.18 71.98 0.66 -3.24 16 2 C 0.11 3.14 3.21 44.99 0.14 3.28 16 3 C -0.16 -4.31 8.77 71.98 0.63 -3.67 16 4 N -0.54 -21.45 2.39 -690.11 -1.65 -23.09 16 5 C 0.25 13.06 4.55 85.63 0.39 13.45 16 6 C -0.51 -28.42 7.71 25.60 0.20 -28.23 16 7 H 0.05 2.81 7.59 -2.91 -0.02 2.78 16 8 C 0.01 0.83 5.46 84.65 0.46 1.29 16 9 N -0.92 -55.55 13.29 21.45 0.28 -55.27 16 10 Si 0.96 45.24 29.54 68.60 2.03 47.27 16 11 H -0.26 -11.58 7.11 99.48 0.71 -10.88 16 12 H -0.29 -13.51 7.11 99.48 0.71 -12.80 16 13 H -0.28 -13.16 7.11 99.48 0.71 -12.46 16 14 C 0.59 23.98 7.68 179.05 1.38 25.36 16 15 S -0.77 -40.33 26.51 -56.49 -1.50 -41.83 16 16 N -0.65 -18.79 5.47 -329.56 -1.80 -20.59 16 17 C 0.04 1.12 6.24 44.99 0.28 1.40 16 18 C -0.17 -2.97 10.46 30.60 0.32 -2.65 16 19 C -0.16 -2.70 10.46 30.60 0.32 -2.38 16 20 H 0.05 1.54 6.30 -2.38 -0.02 1.53 16 21 H 0.11 1.81 8.14 -2.38 -0.02 1.79 16 22 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 23 H 0.11 2.09 5.52 -2.39 -0.01 2.07 16 24 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 25 H 0.10 1.91 8.14 -2.38 -0.02 1.89 16 26 H 0.05 2.00 6.58 -2.39 -0.02 1.98 16 27 H 0.04 1.88 6.08 -2.38 -0.01 1.87 16 28 H 0.04 2.15 6.46 -2.39 -0.02 2.14 16 29 H 0.26 15.07 8.31 -92.71 -0.77 14.30 16 30 H 0.41 8.64 6.24 -92.71 -0.58 8.06 16 31 H 0.13 4.40 6.49 -2.39 -0.02 4.38 16 32 H 0.11 1.82 8.14 -2.39 -0.02 1.80 16 33 H 0.11 1.60 8.14 -2.39 -0.02 1.58 16 34 H 0.11 1.48 8.14 -2.39 -0.02 1.46 16 35 H 0.12 1.72 8.14 -2.39 -0.02 1.70 16 Total: -1.00 -75.62 296.94 2.65 -72.97 By element: Atomic # 1 Polarization: 15.43 SS G_CDS: 0.50 Total: 15.94 kcal Atomic # 6 Polarization: -0.17 SS G_CDS: 4.78 Total: 4.61 kcal Atomic # 7 Polarization: -95.78 SS G_CDS: -3.16 Total: -98.95 kcal Atomic # 14 Polarization: 45.24 SS G_CDS: 2.03 Total: 47.27 kcal Atomic # 16 Polarization: -40.33 SS G_CDS: -1.50 Total: -41.83 kcal Total: -75.62 2.65 -72.97 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000164240949.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.406 kcal (2) G-P(sol) polarization free energy of solvation -75.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.651 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.967 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.439 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds