Wall clock time and date at job start Mon Mar 30 2020 03:57:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53003 * 109.46852 * 2 1 4 4 N 1.46501 * 109.47094 * 119.99320 * 2 1 3 5 5 C 1.34780 * 120.00074 * 155.00060 * 4 2 1 6 6 S 1.71200 * 119.99695 * 5.20325 * 5 4 2 7 7 N 1.34766 * 120.00094 * 185.19963 * 5 4 2 8 8 C 1.46502 * 120.00378 * 5.83927 * 7 5 4 9 9 C 1.50698 * 109.47539 * 270.00176 * 8 7 5 10 10 H 1.07999 * 119.99725 * 359.97438 * 9 8 7 11 11 C 1.37877 * 119.99923 * 179.97438 * 9 8 7 12 12 N 1.31511 * 120.00069 * 359.97438 * 11 9 8 13 13 Si 1.86802 * 119.99536 * 179.97438 * 11 9 8 14 14 H 1.48498 * 109.47426 * 0.02562 * 13 11 9 15 15 H 1.48502 * 109.46882 * 120.00214 * 13 11 9 16 16 H 1.48503 * 109.47223 * 239.99928 * 13 11 9 17 17 C 1.46502 * 119.99995 * 185.84167 * 7 5 4 18 18 C 1.52999 * 117.49813 * 27.63549 * 17 7 5 19 19 C 1.52999 * 117.49815 * 318.97374 * 17 7 5 20 20 H 1.08998 * 109.47562 * 300.00217 * 1 2 3 21 21 H 1.09004 * 109.47313 * 60.00967 * 1 2 3 22 22 H 1.09010 * 109.47211 * 179.97438 * 1 2 3 23 23 H 1.08998 * 109.47562 * 239.99783 * 2 1 3 24 24 H 1.09007 * 109.46858 * 299.99571 * 3 2 1 25 25 H 1.08998 * 109.47214 * 59.99570 * 3 2 1 26 26 H 1.09000 * 109.47098 * 180.02562 * 3 2 1 27 27 H 0.96997 * 119.99972 * 335.00394 * 4 2 1 28 28 H 1.09007 * 109.46625 * 30.00376 * 8 7 5 29 29 H 1.09001 * 109.47236 * 149.99221 * 8 7 5 30 30 H 0.97003 * 119.99621 * 179.97438 * 12 11 9 31 31 H 1.09001 * 115.54730 * 173.30785 * 17 7 5 32 32 H 1.09000 * 117.50019 * 0.02562 * 18 17 7 33 33 H 1.09004 * 117.49894 * 145.02141 * 18 17 7 34 34 H 1.09002 * 117.49758 * 214.97643 * 19 17 7 35 35 H 1.08998 * 117.49873 * 359.97438 * 19 17 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 2.0183 -0.6905 1.1963 5 6 3.2403 -1.2590 1.1946 6 16 4.2745 -1.0611 -0.1553 7 7 3.6480 -1.9832 2.2555 8 6 2.7192 -2.2601 3.3540 9 6 2.8176 -1.1640 4.3835 10 1 3.5038 -0.3434 4.2346 11 6 2.0317 -1.2089 5.5155 12 7 1.1958 -2.2079 5.6965 13 14 2.1543 0.1495 6.7919 14 1 3.1609 1.1501 6.3550 15 1 0.8326 0.8100 6.9403 16 1 2.5665 -0.4314 8.0950 17 6 5.0202 -2.4936 2.3102 18 6 6.0967 -1.7078 1.5589 19 6 5.6164 -3.0571 1.0187 20 1 -0.3634 0.5138 0.8899 21 1 -0.3634 0.5137 -0.8901 22 1 -0.3634 -1.0277 -0.0005 23 1 1.8934 -0.5138 -0.8899 24 1 1.6766 1.9563 -0.8901 25 1 1.6765 1.9564 0.8899 26 1 3.1299 1.4426 -0.0005 27 1 1.4621 -0.7385 1.9895 28 1 1.7012 -2.3045 2.9667 29 1 2.9747 -3.2148 3.8140 30 1 0.6432 -2.2396 6.4931 31 1 5.3072 -2.9709 3.2472 32 1 5.7841 -0.8108 1.0242 33 1 7.0921 -1.6684 2.0014 34 1 6.2960 -3.9048 1.1061 35 1 4.9875 -3.0485 0.1285 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000164242216.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:57:51 Heat of formation + Delta-G solvation = 50.297666 kcal Electronic energy + Delta-G solvation = -16054.361046 eV Core-core repulsion = 13600.929157 eV Total energy + Delta-G solvation = -2453.431890 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 242.115 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.22826 -37.09018 -34.34277 -32.88402 -30.78750 -27.77732 -27.03403 -24.24455 -22.81637 -21.65215 -21.08726 -20.13023 -17.50239 -16.84046 -16.52697 -15.12541 -14.82814 -14.44303 -14.30197 -13.66466 -13.30068 -12.96191 -12.48462 -12.23647 -12.09902 -11.84607 -11.72952 -11.35543 -11.18360 -11.02689 -10.86378 -10.75159 -10.62190 -10.23144 -10.07876 -9.75582 -9.62039 -8.83084 -7.96787 -6.75079 -6.40127 -6.19349 -4.54514 2.15045 2.62161 3.07553 3.17288 3.21526 3.27615 3.98929 4.16850 4.67943 4.89642 5.04435 5.23974 5.43616 5.47148 5.64899 5.75393 5.85573 5.86519 5.97406 6.07161 6.18476 6.31398 6.40611 6.44246 6.61006 6.76304 6.88462 7.06652 7.24282 7.31518 7.50739 7.68822 7.73153 8.02225 8.55095 9.15639 10.62605 Molecular weight = 242.11amu Principal moments of inertia in cm(-1) A = 0.018528 B = 0.009681 C = 0.007324 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1510.889125 B = 2891.580517 C = 3822.180200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.140 3.860 3 C -0.162 4.162 4 N -0.679 5.679 5 C 0.574 3.426 6 S -0.708 6.708 7 N -0.514 5.514 8 C 0.225 3.775 9 C -0.548 4.548 10 H 0.066 0.934 11 C 0.069 3.931 12 N -0.886 5.886 13 Si 0.902 3.098 14 H -0.270 1.270 15 H -0.281 1.281 16 H -0.280 1.280 17 C 0.067 3.933 18 C -0.188 4.188 19 C -0.181 4.181 20 H 0.060 0.940 21 H 0.073 0.927 22 H 0.060 0.940 23 H 0.106 0.894 24 H 0.061 0.939 25 H 0.051 0.949 26 H 0.077 0.923 27 H 0.410 0.590 28 H 0.038 0.962 29 H 0.051 0.949 30 H 0.269 0.731 31 H 0.129 0.871 32 H 0.150 0.850 33 H 0.074 0.926 34 H 0.076 0.924 35 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.530 2.127 -6.294 6.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.035 3.965 3 C -0.221 4.221 4 N -0.312 5.312 5 C 0.210 3.790 6 S -0.578 6.578 7 N -0.216 5.216 8 C 0.104 3.896 9 C -0.587 4.587 10 H 0.085 0.915 11 C -0.136 4.136 12 N -0.523 5.523 13 Si 0.729 3.271 14 H -0.195 1.195 15 H -0.206 1.206 16 H -0.205 1.205 17 C -0.038 4.038 18 C -0.228 4.228 19 C -0.220 4.220 20 H 0.080 0.920 21 H 0.092 0.908 22 H 0.079 0.921 23 H 0.124 0.876 24 H 0.080 0.920 25 H 0.070 0.930 26 H 0.096 0.904 27 H 0.251 0.749 28 H 0.056 0.944 29 H 0.069 0.931 30 H 0.078 0.922 31 H 0.147 0.853 32 H 0.167 0.833 33 H 0.093 0.907 34 H 0.094 0.906 35 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -0.110 2.148 -6.972 7.296 hybrid contribution -0.845 0.450 2.169 2.371 sum -0.955 2.598 -4.803 5.543 Atomic orbital electron populations 1.22106 0.94413 1.02604 1.02839 1.21212 0.93251 0.93720 0.88323 1.22179 1.03774 0.94866 1.01256 1.45251 1.15287 1.52969 1.17673 1.21825 0.86406 0.81340 0.89478 1.92720 1.52493 1.83744 1.28873 1.46846 1.12521 1.44912 1.17317 1.19778 0.87663 0.98693 0.83479 1.21445 1.24192 1.08291 1.04765 0.91531 1.24964 0.94517 0.96190 0.97905 1.69926 1.23755 1.30417 1.28244 0.86356 0.78237 0.81534 0.80973 1.19450 1.20633 1.20548 1.21779 0.79892 1.04720 0.97396 1.24235 0.95497 1.00414 1.02659 1.23853 1.03109 0.95992 0.99083 0.92046 0.90781 0.92090 0.87635 0.91965 0.93037 0.90445 0.74950 0.94407 0.93060 0.92170 0.85319 0.83305 0.90739 0.90581 0.85159 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.92 9.38 37.16 0.35 -1.57 16 2 C 0.14 2.07 2.93 -67.93 -0.20 1.87 16 3 C -0.16 -2.31 9.40 37.16 0.35 -1.96 16 4 N -0.68 -12.12 4.86 -55.52 -0.27 -12.39 16 5 C 0.57 11.52 7.46 -86.92 -0.65 10.88 16 6 S -0.71 -14.59 19.59 -107.50 -2.11 -16.70 16 7 N -0.51 -10.64 2.85 -169.48 -0.48 -11.12 16 8 C 0.23 5.11 4.84 -5.19 -0.03 5.08 16 9 C -0.55 -13.55 9.22 -34.44 -0.32 -13.87 16 10 H 0.07 1.72 7.81 -52.49 -0.41 1.31 16 11 C 0.07 1.73 5.46 -17.82 -0.10 1.63 16 12 N -0.89 -23.13 13.29 55.43 0.74 -22.39 16 13 Si 0.90 19.76 29.54 -169.99 -5.02 14.74 16 14 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 15 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 16 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 17 C 0.07 1.28 6.62 -67.93 -0.45 0.83 16 18 C -0.19 -3.48 9.40 -26.69 -0.25 -3.73 16 19 C -0.18 -3.22 9.51 -26.69 -0.25 -3.47 16 20 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 21 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 22 H 0.06 0.73 8.14 -51.92 -0.42 0.30 16 23 H 0.11 1.69 6.97 -51.93 -0.36 1.33 16 24 H 0.06 0.74 8.14 -51.92 -0.42 0.31 16 25 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 26 H 0.08 1.30 7.16 -51.93 -0.37 0.92 16 27 H 0.41 7.61 6.47 -40.82 -0.26 7.35 16 28 H 0.04 0.87 6.71 -51.92 -0.35 0.53 16 29 H 0.05 1.23 8.07 -51.93 -0.42 0.81 16 30 H 0.27 6.66 8.31 -40.82 -0.34 6.32 16 31 H 0.13 2.35 8.14 -51.93 -0.42 1.93 16 32 H 0.15 3.09 4.69 -21.99 -0.10 2.99 16 33 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 34 H 0.08 1.18 8.14 -51.93 -0.42 0.75 16 35 H 0.13 2.58 5.56 -31.42 -0.17 2.40 16 LS Contribution 292.57 15.07 4.41 4.41 Total: -1.00 -26.55 292.57 -9.25 -35.79 By element: Atomic # 1 Polarization: 16.95 SS G_CDS: -4.97 Total: 11.98 kcal Atomic # 6 Polarization: -2.77 SS G_CDS: -1.54 Total: -4.31 kcal Atomic # 7 Polarization: -45.89 SS G_CDS: -0.02 Total: -45.91 kcal Atomic # 14 Polarization: 19.76 SS G_CDS: -5.02 Total: 14.74 kcal Atomic # 16 Polarization: -14.59 SS G_CDS: -2.11 Total: -16.70 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -26.55 -9.25 -35.79 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000164242216.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.092 kcal (2) G-P(sol) polarization free energy of solvation -26.546 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.546 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.249 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.794 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.298 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds