Wall clock time and date at job start Mon Mar 30 2020 03:57:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53003 * 109.46852 * 2 1 4 4 N 1.46501 * 109.47094 * 119.99320 * 2 1 3 5 5 C 1.34780 * 120.00074 * 155.00060 * 4 2 1 6 6 S 1.71200 * 119.99695 * 5.20325 * 5 4 2 7 7 N 1.34766 * 120.00094 * 185.19963 * 5 4 2 8 8 C 1.46502 * 120.00378 * 5.83927 * 7 5 4 9 9 C 1.50698 * 109.47539 * 270.00176 * 8 7 5 10 10 H 1.07999 * 119.99725 * 359.97438 * 9 8 7 11 11 C 1.37877 * 119.99923 * 179.97438 * 9 8 7 12 12 N 1.31511 * 120.00069 * 359.97438 * 11 9 8 13 13 Si 1.86802 * 119.99536 * 179.97438 * 11 9 8 14 14 H 1.48498 * 109.47426 * 0.02562 * 13 11 9 15 15 H 1.48502 * 109.46882 * 120.00214 * 13 11 9 16 16 H 1.48503 * 109.47223 * 239.99928 * 13 11 9 17 17 C 1.46502 * 119.99995 * 185.84167 * 7 5 4 18 18 C 1.52999 * 117.49813 * 27.63549 * 17 7 5 19 19 C 1.52999 * 117.49815 * 318.97374 * 17 7 5 20 20 H 1.08998 * 109.47562 * 300.00217 * 1 2 3 21 21 H 1.09004 * 109.47313 * 60.00967 * 1 2 3 22 22 H 1.09010 * 109.47211 * 179.97438 * 1 2 3 23 23 H 1.08998 * 109.47562 * 239.99783 * 2 1 3 24 24 H 1.09007 * 109.46858 * 299.99571 * 3 2 1 25 25 H 1.08998 * 109.47214 * 59.99570 * 3 2 1 26 26 H 1.09000 * 109.47098 * 180.02562 * 3 2 1 27 27 H 0.96997 * 119.99972 * 335.00394 * 4 2 1 28 28 H 1.09007 * 109.46625 * 30.00376 * 8 7 5 29 29 H 1.09001 * 109.47236 * 149.99221 * 8 7 5 30 30 H 0.97003 * 119.99621 * 179.97438 * 12 11 9 31 31 H 1.09001 * 115.54730 * 173.30785 * 17 7 5 32 32 H 1.09000 * 117.50019 * 0.02562 * 18 17 7 33 33 H 1.09004 * 117.49894 * 145.02141 * 18 17 7 34 34 H 1.09002 * 117.49758 * 214.97643 * 19 17 7 35 35 H 1.08998 * 117.49873 * 359.97438 * 19 17 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 2.0183 -0.6905 1.1963 5 6 3.2403 -1.2590 1.1946 6 16 4.2745 -1.0611 -0.1553 7 7 3.6480 -1.9832 2.2555 8 6 2.7192 -2.2601 3.3540 9 6 2.8176 -1.1640 4.3835 10 1 3.5038 -0.3434 4.2346 11 6 2.0317 -1.2089 5.5155 12 7 1.1958 -2.2079 5.6965 13 14 2.1543 0.1495 6.7919 14 1 3.1609 1.1501 6.3550 15 1 0.8326 0.8100 6.9403 16 1 2.5665 -0.4314 8.0950 17 6 5.0202 -2.4936 2.3102 18 6 6.0967 -1.7078 1.5589 19 6 5.6164 -3.0571 1.0187 20 1 -0.3634 0.5138 0.8899 21 1 -0.3634 0.5137 -0.8901 22 1 -0.3634 -1.0277 -0.0005 23 1 1.8934 -0.5138 -0.8899 24 1 1.6766 1.9563 -0.8901 25 1 1.6765 1.9564 0.8899 26 1 3.1299 1.4426 -0.0005 27 1 1.4621 -0.7385 1.9895 28 1 1.7012 -2.3045 2.9667 29 1 2.9747 -3.2148 3.8140 30 1 0.6432 -2.2396 6.4931 31 1 5.3072 -2.9709 3.2472 32 1 5.7841 -0.8108 1.0242 33 1 7.0921 -1.6684 2.0014 34 1 6.2960 -3.9048 1.1061 35 1 4.9875 -3.0485 0.1285 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000164242216.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:57:51 Heat of formation + Delta-G solvation = 36.915564 kcal Electronic energy + Delta-G solvation = -16054.941338 eV Core-core repulsion = 13600.929157 eV Total energy + Delta-G solvation = -2454.012181 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 242.115 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.76239 -38.46444 -35.94735 -34.62598 -32.23300 -29.54990 -28.12008 -25.95854 -24.41828 -23.10288 -22.46800 -21.59875 -19.07707 -18.71148 -18.08791 -16.65479 -16.43346 -15.86497 -15.73902 -15.09297 -14.91334 -14.41081 -13.95442 -13.79944 -13.45426 -13.14112 -13.07672 -12.91915 -12.75600 -12.49896 -12.43731 -12.35943 -12.04206 -11.82474 -11.57856 -11.43486 -11.10029 -10.75258 -9.48332 -8.46653 -8.21272 -7.79802 -6.52929 0.57566 1.02489 1.34434 1.39587 1.49449 1.79083 2.29291 2.51398 2.95554 3.20973 3.88474 3.97580 4.13642 4.18015 4.35467 4.41522 4.56577 4.72121 4.74796 4.83951 4.91687 4.92536 5.01282 5.04381 5.17910 5.38172 5.42840 5.52933 5.60427 5.73085 5.79731 5.80890 6.15788 6.44610 6.61677 7.20448 8.69925 Molecular weight = 242.11amu Principal moments of inertia in cm(-1) A = 0.018528 B = 0.009681 C = 0.007324 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1510.889125 B = 2891.580517 C = 3822.180200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.135 3.865 3 C -0.155 4.155 4 N -0.674 5.674 5 C 0.567 3.433 6 S -0.721 6.721 7 N -0.522 5.522 8 C 0.242 3.758 9 C -0.553 4.553 10 H 0.052 0.948 11 C 0.031 3.969 12 N -0.912 5.912 13 Si 0.960 3.040 14 H -0.274 1.274 15 H -0.274 1.274 16 H -0.277 1.277 17 C 0.049 3.951 18 C -0.186 4.186 19 C -0.165 4.165 20 H 0.062 0.938 21 H 0.102 0.898 22 H 0.058 0.942 23 H 0.094 0.906 24 H 0.090 0.910 25 H 0.051 0.949 26 H 0.048 0.952 27 H 0.407 0.593 28 H 0.032 0.968 29 H 0.036 0.964 30 H 0.272 0.728 31 H 0.136 0.864 32 H 0.128 0.872 33 H 0.097 0.903 34 H 0.104 0.896 35 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.794 2.728 -6.327 6.936 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.031 3.969 3 C -0.213 4.213 4 N -0.305 5.305 5 C 0.202 3.798 6 S -0.592 6.592 7 N -0.225 5.225 8 C 0.119 3.881 9 C -0.591 4.591 10 H 0.070 0.930 11 C -0.171 4.171 12 N -0.550 5.550 13 Si 0.785 3.215 14 H -0.199 1.199 15 H -0.199 1.199 16 H -0.203 1.203 17 C -0.055 4.055 18 C -0.226 4.226 19 C -0.204 4.204 20 H 0.081 0.919 21 H 0.120 0.880 22 H 0.077 0.923 23 H 0.112 0.888 24 H 0.109 0.891 25 H 0.070 0.930 26 H 0.068 0.932 27 H 0.246 0.754 28 H 0.050 0.950 29 H 0.054 0.946 30 H 0.081 0.919 31 H 0.153 0.847 32 H 0.145 0.855 33 H 0.115 0.885 34 H 0.122 0.878 35 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -0.380 2.761 -7.034 7.566 hybrid contribution -0.760 0.271 2.121 2.270 sum -1.140 3.032 -4.913 5.885 Atomic orbital electron populations 1.22075 0.91736 1.02999 1.04296 1.21452 0.95304 0.93519 0.86592 1.22107 1.01869 0.94671 1.02694 1.45511 1.14365 1.52184 1.18391 1.21894 0.87113 0.81617 0.89154 1.92689 1.53149 1.84135 1.29211 1.46794 1.12959 1.45678 1.17038 1.19417 0.87771 0.97330 0.83565 1.21498 1.23819 1.08293 1.05494 0.92977 1.25600 0.94179 0.97920 0.99418 1.69993 1.24361 1.31707 1.28920 0.85468 0.78195 0.79053 0.78766 1.19894 1.19895 1.20260 1.21997 0.79401 1.05665 0.98396 1.24137 0.96228 0.99795 1.02450 1.23763 1.02686 0.96622 0.97372 0.91873 0.87962 0.92259 0.88770 0.89105 0.92973 0.93249 0.75374 0.95003 0.94563 0.91870 0.84680 0.85496 0.88500 0.87752 0.87072 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.32 9.38 71.98 0.68 -2.65 16 2 C 0.14 3.87 2.93 44.99 0.13 4.00 16 3 C -0.15 -4.22 9.40 71.98 0.68 -3.55 16 4 N -0.67 -23.94 4.86 -329.58 -1.60 -25.55 16 5 C 0.57 22.86 7.46 179.06 1.34 24.20 16 6 S -0.72 -29.75 19.59 -56.49 -1.11 -30.85 16 7 N -0.52 -21.70 2.85 -690.10 -1.96 -23.66 16 8 C 0.24 11.05 4.84 85.63 0.41 11.46 16 9 C -0.55 -27.32 9.22 25.60 0.24 -27.09 16 10 H 0.05 2.70 7.81 -2.91 -0.02 2.68 16 11 C 0.03 1.54 5.46 84.66 0.46 2.00 16 12 N -0.91 -47.27 13.29 21.45 0.28 -46.98 16 13 Si 0.96 40.01 29.54 68.60 2.03 42.04 16 14 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 15 H -0.27 -11.05 7.11 99.48 0.71 -10.34 16 16 H -0.28 -11.39 7.11 99.48 0.71 -10.68 16 17 C 0.05 1.86 6.62 44.99 0.30 2.16 16 18 C -0.19 -6.71 9.40 30.62 0.29 -6.42 16 19 C -0.16 -5.68 9.51 30.62 0.29 -5.39 16 20 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 21 H 0.10 1.66 8.14 -2.39 -0.02 1.64 16 22 H 0.06 1.31 8.14 -2.38 -0.02 1.29 16 23 H 0.09 2.96 6.97 -2.39 -0.02 2.94 16 24 H 0.09 1.93 8.14 -2.38 -0.02 1.92 16 25 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 26 H 0.05 1.63 7.16 -2.39 -0.02 1.62 16 27 H 0.41 15.08 6.47 -92.71 -0.60 14.48 16 28 H 0.03 1.49 6.71 -2.38 -0.02 1.48 16 29 H 0.04 1.76 8.07 -2.39 -0.02 1.74 16 30 H 0.27 13.33 8.31 -92.71 -0.77 12.56 16 31 H 0.14 4.85 8.14 -2.39 -0.02 4.83 16 32 H 0.13 5.25 4.69 -21.42 -0.10 5.15 16 33 H 0.10 3.01 8.14 -2.39 -0.02 2.99 16 34 H 0.10 2.98 8.14 -2.39 -0.02 2.96 16 35 H 0.11 4.33 5.56 -15.43 -0.09 4.24 16 Total: -1.00 -55.66 292.57 2.76 -52.89 By element: Atomic # 1 Polarization: 33.07 SS G_CDS: 0.32 Total: 33.39 kcal Atomic # 6 Polarization: -6.08 SS G_CDS: 4.81 Total: -1.27 kcal Atomic # 7 Polarization: -92.91 SS G_CDS: -3.28 Total: -96.19 kcal Atomic # 14 Polarization: 40.01 SS G_CDS: 2.03 Total: 42.04 kcal Atomic # 16 Polarization: -29.75 SS G_CDS: -1.11 Total: -30.85 kcal Total: -55.66 2.76 -52.89 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000164242216.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.807 kcal (2) G-P(sol) polarization free energy of solvation -55.656 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.151 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.764 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.892 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.916 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds