Wall clock time and date at job start Mon Mar 30 2020 03:43:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34775 * 120.00048 * 2 1 4 4 O 1.21282 * 120.00081 * 359.72744 * 3 2 1 5 5 C 1.50702 * 119.99679 * 180.02562 * 3 2 1 6 6 H 1.08997 * 109.68614 * 9.92500 * 5 3 2 7 7 C 1.53295 * 109.68355 * 249.40293 * 5 3 2 8 8 O 1.42956 * 109.22692 * 187.97664 * 7 5 3 9 9 C 1.42960 * 114.16540 * 62.58063 * 8 7 5 10 10 C 1.53294 * 109.22748 * 297.42101 * 9 8 7 11 11 N 1.47152 * 109.68224 * 130.44192 * 5 3 2 12 12 C 1.34782 * 120.97815 * 350.23380 * 11 5 3 13 13 O 1.21686 * 120.00296 * 5.73215 * 12 11 5 14 14 C 1.46380 * 119.99892 * 185.73363 * 12 11 5 15 15 H 1.08000 * 119.99579 * 9.50329 * 14 12 11 16 16 C 1.40039 * 120.00103 * 189.49698 * 14 12 11 17 17 N 1.30676 * 120.00322 * 0.02562 * 16 14 12 18 18 Si 1.86800 * 120.00076 * 180.02562 * 16 14 12 19 19 H 1.48495 * 109.47197 * 90.00497 * 18 16 14 20 20 H 1.48501 * 109.47263 * 210.00318 * 18 16 14 21 21 H 1.48505 * 109.47254 * 330.00140 * 18 16 14 22 22 H 1.09004 * 109.46531 * 299.99498 * 1 2 3 23 23 H 1.08992 * 109.47243 * 59.99620 * 1 2 3 24 24 H 1.09000 * 109.47296 * 180.02562 * 1 2 3 25 25 H 0.97009 * 119.99609 * 180.02562 * 2 1 3 26 26 H 1.08997 * 109.51283 * 307.90614 * 7 5 3 27 27 H 1.09001 * 109.51073 * 68.05277 * 7 5 3 28 28 H 1.09004 * 109.51318 * 57.34482 * 9 8 7 29 29 H 1.09000 * 109.51603 * 177.44567 * 9 8 7 30 30 H 1.08993 * 109.68699 * 172.02646 * 10 9 8 31 31 H 1.08998 * 109.68138 * 292.58210 * 10 9 8 32 32 H 0.96996 * 120.00030 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5325 2.2175 -0.0050 5 6 3.6459 1.1671 -0.0006 6 1 4.0129 0.1562 -0.1778 7 6 4.1628 1.6745 1.3504 8 8 5.5800 1.8473 1.2775 9 6 6.0020 2.8252 0.3239 10 6 5.5794 2.3769 -1.0798 11 7 4.1412 2.0661 -1.0551 12 6 3.3022 2.5897 -1.9708 13 8 2.1032 2.4063 -1.8728 14 6 3.8333 3.3789 -3.0833 15 1 4.8982 3.4151 -3.2597 16 6 2.9607 4.0870 -3.9190 17 7 1.6723 4.0435 -3.7053 18 14 3.6385 5.0936 -5.3391 19 1 3.7164 4.2445 -6.5549 20 1 2.7425 6.2490 -5.5989 21 1 4.9953 5.5876 -4.9925 22 1 -0.3632 0.5138 0.8901 23 1 -0.3633 0.5138 -0.8899 24 1 -0.3634 -1.0276 0.0005 25 1 1.9500 -0.8402 -0.0004 26 1 3.6913 2.6287 1.5856 27 1 3.9241 0.9484 2.1276 28 1 5.5372 3.7837 0.5552 29 1 7.0865 2.9277 0.3630 30 1 5.7698 3.1779 -1.7940 31 1 6.1415 1.4879 -1.3660 32 1 1.0679 4.5342 -4.2839 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000166818094.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:43:50 Heat of formation + Delta-G solvation = -80.709122 kcal Electronic energy + Delta-G solvation = -18634.763029 eV Core-core repulsion = 15597.064293 eV Total energy + Delta-G solvation = -3037.698736 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 242.110 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.79968 -37.84210 -36.47324 -33.68984 -33.39959 -32.40974 -31.20334 -27.56170 -26.34396 -25.84585 -23.61621 -21.48809 -20.34034 -18.94476 -17.25671 -16.28627 -15.93072 -15.62294 -15.34450 -14.77817 -14.50287 -14.17821 -14.03031 -13.71619 -13.35773 -12.53790 -12.32916 -12.15726 -11.77664 -11.67868 -11.29768 -11.21101 -10.97067 -10.81618 -10.50101 -10.25074 -10.04881 -9.66520 -8.87182 -8.74959 -8.38745 -7.29427 -7.04926 -6.12376 -4.61550 3.13522 3.20111 3.23144 3.48050 3.84093 4.06680 4.18874 4.50476 4.65164 5.28926 5.39761 5.42898 5.55810 5.60134 5.69143 5.77129 5.93553 5.98596 6.00956 6.06469 6.28407 6.37339 6.48844 7.14792 7.38761 7.39016 7.45609 8.04626 8.21701 8.30993 9.02471 9.24537 9.40989 10.61137 10.79878 Molecular weight = 242.11amu Principal moments of inertia in cm(-1) A = 0.021819 B = 0.010451 C = 0.007461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1282.949060 B = 2678.428792 C = 3751.698548 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.101 3.899 2 N -0.747 5.747 3 C 0.519 3.481 4 O -0.471 6.471 5 C 0.104 3.896 6 H 0.068 0.932 7 C 0.064 3.936 8 O -0.385 6.385 9 C 0.043 3.957 10 C 0.093 3.907 11 N -0.634 5.634 12 C 0.550 3.450 13 O -0.531 6.531 14 C -0.544 4.544 15 H 0.070 0.930 16 C 0.088 3.912 17 N -0.764 5.764 18 Si 0.906 3.094 19 H -0.273 1.273 20 H -0.280 1.280 21 H -0.265 1.265 22 H 0.048 0.952 23 H 0.059 0.941 24 H 0.062 0.938 25 H 0.390 0.610 26 H 0.061 0.939 27 H 0.095 0.905 28 H 0.054 0.946 29 H 0.096 0.904 30 H 0.104 0.896 31 H 0.051 0.949 32 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.138 -6.375 6.538 10.477 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.044 4.044 2 N -0.403 5.403 3 C 0.303 3.697 4 O -0.340 6.340 5 C -0.004 4.004 6 H 0.086 0.914 7 C -0.014 4.014 8 O -0.303 6.303 9 C -0.034 4.034 10 C -0.031 4.031 11 N -0.377 5.377 12 C 0.355 3.645 13 O -0.410 6.410 14 C -0.581 4.581 15 H 0.088 0.912 16 C -0.132 4.132 17 N -0.392 5.392 18 Si 0.731 3.269 19 H -0.198 1.198 20 H -0.205 1.205 21 H -0.189 1.189 22 H 0.067 0.933 23 H 0.078 0.922 24 H 0.080 0.920 25 H 0.221 0.779 26 H 0.079 0.921 27 H 0.113 0.887 28 H 0.073 0.927 29 H 0.114 0.886 30 H 0.122 0.878 31 H 0.070 0.930 32 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 3.894 -5.666 6.621 9.545 hybrid contribution 0.498 0.161 -1.023 1.149 sum 4.391 -5.505 5.598 8.996 Atomic orbital electron populations 1.21302 0.80468 1.00550 1.02060 1.45603 1.07029 1.08129 1.79492 1.19702 0.88626 0.83867 0.77460 1.90764 1.69464 1.30638 1.43127 1.21335 0.92745 0.95317 0.91050 0.91389 1.22756 0.81818 1.01458 0.95373 1.87852 1.21605 1.60759 1.60102 1.23088 0.99668 0.91459 0.89225 1.22084 0.82918 1.01258 0.96886 1.48350 1.07329 1.51843 1.30187 1.18382 0.85509 0.79469 0.81149 1.90810 1.14394 1.60922 1.74901 1.20879 0.93869 1.31473 1.11852 0.91195 1.25697 0.94408 0.95583 0.97521 1.70025 1.02701 1.32852 1.33656 0.86405 0.79518 0.79499 0.81522 1.19802 1.20506 1.18923 0.93306 0.92203 0.91962 0.77857 0.92071 0.88702 0.92735 0.88602 0.87818 0.93029 0.92156 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.63 10.70 59.85 0.64 2.27 16 2 N -0.75 -13.14 5.71 -67.08 -0.38 -13.52 16 3 C 0.52 11.53 5.09 -10.99 -0.06 11.47 16 4 O -0.47 -13.04 13.61 -20.27 -0.28 -13.32 16 5 C 0.10 2.08 3.49 -68.57 -0.24 1.84 16 6 H 0.07 1.19 7.96 -51.93 -0.41 0.78 16 7 C 0.06 1.11 6.27 37.31 0.23 1.34 16 8 O -0.38 -6.50 10.74 -35.23 -0.38 -6.88 16 9 C 0.04 0.69 6.98 37.31 0.26 0.95 16 10 C 0.09 1.73 6.47 -3.53 -0.02 1.71 16 11 N -0.63 -14.73 3.02 -167.70 -0.51 -15.23 16 12 C 0.55 15.82 7.38 -12.98 -0.10 15.72 16 13 O -0.53 -17.06 10.12 -20.62 -0.21 -17.27 16 14 C -0.54 -15.35 8.69 -35.63 -0.31 -15.66 16 15 H 0.07 1.79 6.05 -52.49 -0.32 1.47 16 16 C 0.09 2.47 5.50 -17.37 -0.10 2.38 16 17 N -0.76 -23.32 11.87 55.55 0.66 -22.66 16 18 Si 0.91 20.30 29.56 -169.99 -5.02 15.27 16 19 H -0.27 -5.99 7.11 56.52 0.40 -5.58 16 20 H -0.28 -6.19 7.11 56.52 0.40 -5.78 16 21 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 22 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 23 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 24 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 25 H 0.39 5.33 8.70 -40.82 -0.36 4.97 16 26 H 0.06 1.18 8.13 -51.93 -0.42 0.75 16 27 H 0.09 1.32 8.14 -51.93 -0.42 0.90 16 28 H 0.05 0.93 8.14 -51.93 -0.42 0.50 16 29 H 0.10 1.21 8.14 -51.93 -0.42 0.78 16 30 H 0.10 1.99 5.66 -51.93 -0.29 1.70 16 31 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 32 H 0.27 7.47 8.29 -40.82 -0.34 7.13 16 LS Contribution 268.30 15.07 4.04 4.04 Total: -1.00 -37.70 268.30 -5.65 -43.35 By element: Atomic # 1 Polarization: 8.08 SS G_CDS: -3.89 Total: 4.18 kcal Atomic # 6 Polarization: 21.71 SS G_CDS: 0.32 Total: 22.03 kcal Atomic # 7 Polarization: -51.18 SS G_CDS: -0.23 Total: -51.41 kcal Atomic # 8 Polarization: -36.60 SS G_CDS: -0.86 Total: -37.47 kcal Atomic # 14 Polarization: 20.30 SS G_CDS: -5.02 Total: 15.27 kcal Total LS contribution 4.04 Total: 4.04 kcal Total: -37.70 -5.65 -43.35 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000166818094.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.358 kcal (2) G-P(sol) polarization free energy of solvation -37.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.653 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.351 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds