Wall clock time and date at job start Mon Mar 30 2020 03:43:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34775 * 120.00048 * 2 1 4 4 O 1.21282 * 120.00081 * 359.72744 * 3 2 1 5 5 C 1.50702 * 119.99679 * 180.02562 * 3 2 1 6 6 H 1.08997 * 109.68614 * 9.92500 * 5 3 2 7 7 C 1.53295 * 109.68355 * 249.40293 * 5 3 2 8 8 O 1.42956 * 109.22692 * 187.97664 * 7 5 3 9 9 C 1.42960 * 114.16540 * 62.58063 * 8 7 5 10 10 C 1.53294 * 109.22748 * 297.42101 * 9 8 7 11 11 N 1.47152 * 109.68224 * 130.44192 * 5 3 2 12 12 C 1.34782 * 120.97815 * 350.23380 * 11 5 3 13 13 O 1.21686 * 120.00296 * 5.73215 * 12 11 5 14 14 C 1.46380 * 119.99892 * 185.73363 * 12 11 5 15 15 H 1.08000 * 119.99579 * 9.50329 * 14 12 11 16 16 C 1.40039 * 120.00103 * 189.49698 * 14 12 11 17 17 N 1.30676 * 120.00322 * 0.02562 * 16 14 12 18 18 Si 1.86800 * 120.00076 * 180.02562 * 16 14 12 19 19 H 1.48495 * 109.47197 * 90.00497 * 18 16 14 20 20 H 1.48501 * 109.47263 * 210.00318 * 18 16 14 21 21 H 1.48505 * 109.47254 * 330.00140 * 18 16 14 22 22 H 1.09004 * 109.46531 * 299.99498 * 1 2 3 23 23 H 1.08992 * 109.47243 * 59.99620 * 1 2 3 24 24 H 1.09000 * 109.47296 * 180.02562 * 1 2 3 25 25 H 0.97009 * 119.99609 * 180.02562 * 2 1 3 26 26 H 1.08997 * 109.51283 * 307.90614 * 7 5 3 27 27 H 1.09001 * 109.51073 * 68.05277 * 7 5 3 28 28 H 1.09004 * 109.51318 * 57.34482 * 9 8 7 29 29 H 1.09000 * 109.51603 * 177.44567 * 9 8 7 30 30 H 1.08993 * 109.68699 * 172.02646 * 10 9 8 31 31 H 1.08998 * 109.68138 * 292.58210 * 10 9 8 32 32 H 0.96996 * 120.00030 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5325 2.2175 -0.0050 5 6 3.6459 1.1671 -0.0006 6 1 4.0129 0.1562 -0.1778 7 6 4.1628 1.6745 1.3504 8 8 5.5800 1.8473 1.2775 9 6 6.0020 2.8252 0.3239 10 6 5.5794 2.3769 -1.0798 11 7 4.1412 2.0661 -1.0551 12 6 3.3022 2.5897 -1.9708 13 8 2.1032 2.4063 -1.8728 14 6 3.8333 3.3789 -3.0833 15 1 4.8982 3.4151 -3.2597 16 6 2.9607 4.0870 -3.9190 17 7 1.6723 4.0435 -3.7053 18 14 3.6385 5.0936 -5.3391 19 1 3.7164 4.2445 -6.5549 20 1 2.7425 6.2490 -5.5989 21 1 4.9953 5.5876 -4.9925 22 1 -0.3632 0.5138 0.8901 23 1 -0.3633 0.5138 -0.8899 24 1 -0.3634 -1.0276 0.0005 25 1 1.9500 -0.8402 -0.0004 26 1 3.6913 2.6287 1.5856 27 1 3.9241 0.9484 2.1276 28 1 5.5372 3.7837 0.5552 29 1 7.0865 2.9277 0.3630 30 1 5.7698 3.1779 -1.7940 31 1 6.1415 1.4879 -1.3660 32 1 1.0679 4.5342 -4.2839 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000166818094.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:43:50 Heat of formation + Delta-G solvation = -111.803946 kcal Electronic energy + Delta-G solvation = -18636.111402 eV Core-core repulsion = 15597.064293 eV Total energy + Delta-G solvation = -3039.047109 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 242.110 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.46626 -39.39278 -38.38551 -35.34280 -35.19831 -34.51284 -32.71520 -29.28711 -28.09774 -27.47722 -25.11762 -23.15219 -22.03637 -20.69885 -19.00833 -18.08657 -17.63743 -17.21007 -16.93817 -16.42529 -16.06307 -15.86985 -15.55448 -15.37100 -15.04038 -14.41469 -13.96760 -13.88619 -13.32939 -13.12278 -13.05907 -12.89986 -12.68038 -12.47863 -12.24580 -11.98568 -11.72250 -11.17690 -10.92105 -10.54282 -9.99704 -9.25664 -8.98389 -8.21573 -6.80187 1.37058 1.39134 1.53643 1.80853 2.22775 2.35908 2.53549 2.70992 2.99076 3.66424 3.83210 3.96648 3.99556 4.22043 4.35885 4.41611 4.47956 4.61842 4.64151 4.69800 4.85058 4.96304 5.04509 5.35356 5.64809 5.69992 6.02753 6.08766 6.29603 6.78273 6.89768 7.36787 7.67680 8.54031 8.72893 Molecular weight = 242.11amu Principal moments of inertia in cm(-1) A = 0.021819 B = 0.010451 C = 0.007461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1282.949060 B = 2678.428792 C = 3751.698548 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.101 3.899 2 N -0.732 5.732 3 C 0.512 3.488 4 O -0.537 6.537 5 C 0.098 3.902 6 H 0.102 0.898 7 C 0.073 3.927 8 O -0.378 6.378 9 C 0.048 3.952 10 C 0.087 3.913 11 N -0.643 5.643 12 C 0.529 3.471 13 O -0.575 6.575 14 C -0.569 4.569 15 H 0.092 0.908 16 C 0.028 3.972 17 N -0.824 5.824 18 Si 0.994 3.006 19 H -0.263 1.263 20 H -0.278 1.278 21 H -0.244 1.244 22 H 0.048 0.952 23 H 0.016 0.984 24 H 0.116 0.884 25 H 0.412 0.588 26 H 0.033 0.967 27 H 0.135 0.865 28 H 0.038 0.962 29 H 0.141 0.859 30 H 0.094 0.906 31 H 0.077 0.923 32 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.632 -7.504 6.710 12.632 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.043 4.043 2 N -0.388 5.388 3 C 0.298 3.702 4 O -0.411 6.411 5 C -0.010 4.010 6 H 0.119 0.881 7 C -0.005 4.005 8 O -0.295 6.295 9 C -0.029 4.029 10 C -0.036 4.036 11 N -0.384 5.384 12 C 0.334 3.666 13 O -0.457 6.457 14 C -0.606 4.606 15 H 0.110 0.890 16 C -0.187 4.187 17 N -0.454 5.454 18 Si 0.813 3.187 19 H -0.187 1.187 20 H -0.204 1.204 21 H -0.167 1.167 22 H 0.067 0.933 23 H 0.035 0.965 24 H 0.134 0.866 25 H 0.247 0.753 26 H 0.051 0.949 27 H 0.153 0.847 28 H 0.056 0.944 29 H 0.159 0.841 30 H 0.112 0.888 31 H 0.095 0.905 32 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 6.460 -6.874 6.833 11.648 hybrid contribution -0.267 0.401 -0.993 1.104 sum 6.194 -6.473 5.840 10.694 Atomic orbital electron populations 1.21397 0.79631 1.03348 0.99942 1.45504 1.07773 1.07996 1.77504 1.20256 0.89793 0.84006 0.76190 1.90730 1.70853 1.33170 1.46376 1.21660 0.91401 0.96373 0.91558 0.88069 1.22740 0.81858 1.01098 0.94789 1.87875 1.20923 1.60740 1.60012 1.23178 1.02080 0.90371 0.87289 1.22337 0.80510 1.02161 0.98597 1.48167 1.08735 1.51666 1.29832 1.18776 0.85610 0.79848 0.82357 1.90787 1.16374 1.62463 1.76107 1.21437 0.95150 1.31640 1.12358 0.89032 1.26956 0.94399 0.96584 1.00716 1.70231 1.04846 1.34710 1.35624 0.85079 0.79355 0.77285 0.76946 1.18745 1.20355 1.16727 0.93303 0.96537 0.86560 0.75258 0.94875 0.84711 0.94358 0.84089 0.88764 0.90505 0.92055 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 3.24 10.70 127.77 1.37 4.61 16 2 N -0.73 -25.20 5.71 -484.53 -2.77 -27.96 16 3 C 0.51 23.02 5.09 87.66 0.45 23.46 16 4 O -0.54 -31.25 13.61 21.65 0.29 -30.96 16 5 C 0.10 3.80 3.49 44.22 0.15 3.95 16 6 H 0.10 3.23 7.96 -2.39 -0.02 3.21 16 7 C 0.07 2.40 6.27 72.08 0.45 2.85 16 8 O -0.38 -11.54 10.74 -148.98 -1.60 -13.14 16 9 C 0.05 1.41 6.98 72.08 0.50 1.92 16 10 C 0.09 3.07 6.47 86.35 0.56 3.63 16 11 N -0.64 -29.67 3.02 -802.69 -2.43 -32.10 16 12 C 0.53 31.31 7.38 86.36 0.64 31.94 16 13 O -0.57 -38.66 10.12 20.39 0.21 -38.46 16 14 C -0.57 -32.58 8.69 24.83 0.22 -32.37 16 15 H 0.09 4.63 6.05 -2.91 -0.02 4.61 16 16 C 0.03 1.59 5.50 85.30 0.47 2.06 16 17 N -0.82 -52.48 11.87 21.83 0.26 -52.22 16 18 Si 0.99 41.94 29.56 68.60 2.03 43.97 16 19 H -0.26 -10.58 7.11 99.48 0.71 -9.87 16 20 H -0.28 -11.55 7.11 99.48 0.71 -10.84 16 21 H -0.24 -9.38 7.11 99.48 0.71 -8.67 16 22 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 23 H 0.02 0.66 8.14 -2.39 -0.02 0.64 16 24 H 0.12 2.43 8.14 -2.39 -0.02 2.41 16 25 H 0.41 10.28 8.70 -92.70 -0.81 9.47 16 26 H 0.03 1.27 8.13 -2.39 -0.02 1.25 16 27 H 0.14 3.30 8.14 -2.39 -0.02 3.28 16 28 H 0.04 1.26 8.14 -2.38 -0.02 1.24 16 29 H 0.14 2.92 8.14 -2.39 -0.02 2.90 16 30 H 0.09 3.49 5.66 -2.39 -0.01 3.48 16 31 H 0.08 2.34 8.14 -2.39 -0.02 2.33 16 32 H 0.27 15.75 8.29 -92.71 -0.77 14.98 16 Total: -1.00 -87.98 268.30 1.14 -86.84 By element: Atomic # 1 Polarization: 21.62 SS G_CDS: 0.34 Total: 21.96 kcal Atomic # 6 Polarization: 37.26 SS G_CDS: 4.80 Total: 42.06 kcal Atomic # 7 Polarization: -107.35 SS G_CDS: -4.93 Total: -112.28 kcal Atomic # 8 Polarization: -81.46 SS G_CDS: -1.10 Total: -82.56 kcal Atomic # 14 Polarization: 41.94 SS G_CDS: 2.03 Total: 43.97 kcal Total: -87.98 1.14 -86.84 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000166818094.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.962 kcal (2) G-P(sol) polarization free energy of solvation -87.981 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.942 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.138 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.842 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.804 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds