Wall clock time and date at job start Mon Mar 30 2020 04:05:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86801 * 120.00036 * 2 1 4 4 H 1.48502 * 109.46865 * 270.00003 * 3 2 1 5 5 H 1.48501 * 109.47192 * 29.99939 * 3 2 1 6 6 H 1.48503 * 109.47118 * 150.00249 * 3 2 1 7 7 C 1.37872 * 120.00100 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00288 * 179.97438 * 7 2 1 9 9 C 1.50704 * 119.99806 * 0.02562 * 7 2 1 10 10 C 1.52999 * 109.47242 * 179.97438 * 9 7 2 11 11 O 1.42903 * 109.47172 * 179.97438 * 10 9 7 12 12 C 1.42900 * 113.99726 * 179.97438 * 11 10 9 13 13 C 1.53002 * 109.46910 * 150.00525 * 12 11 10 14 14 C 1.52997 * 109.47493 * 180.02562 * 13 12 11 15 15 C 1.52996 * 109.46880 * 300.00006 * 14 13 12 16 16 C 1.50706 * 109.47215 * 179.97438 * 15 14 13 17 17 O 1.20825 * 119.99859 * 359.97438 * 16 15 14 18 18 O 1.34224 * 120.00295 * 180.02562 * 16 15 14 19 19 C 1.52998 * 109.47228 * 60.00058 * 15 14 13 20 20 C 1.52996 * 109.47332 * 270.00451 * 12 11 10 21 21 H 0.97001 * 119.99677 * 359.97438 * 1 2 3 22 22 H 1.09001 * 109.47374 * 59.99379 * 9 7 2 23 23 H 1.09007 * 109.46677 * 299.99510 * 9 7 2 24 24 H 1.09009 * 109.47230 * 59.99729 * 10 9 7 25 25 H 1.08998 * 109.47060 * 299.99684 * 10 9 7 26 26 H 1.09000 * 109.47292 * 30.01096 * 12 11 10 27 27 H 1.09003 * 109.47318 * 59.99856 * 13 12 11 28 28 H 1.09008 * 109.46908 * 300.00299 * 13 12 11 29 29 H 1.08997 * 109.47186 * 180.02562 * 14 13 12 30 30 H 1.09003 * 109.47116 * 59.99536 * 14 13 12 31 31 H 1.09000 * 109.47459 * 300.00106 * 15 14 13 32 32 H 0.96700 * 117.00196 * 179.97438 * 18 16 15 33 33 H 1.09000 * 109.47766 * 59.99578 * 19 15 14 34 34 H 1.09005 * 109.47327 * 180.02562 * 19 15 14 35 35 H 1.09000 * 109.47091 * 299.99659 * 20 12 11 36 36 H 1.08997 * 109.47192 * 60.00463 * 20 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0017 10 6 2.2452 -3.6621 -0.0027 11 8 1.5306 -4.8996 -0.0032 12 6 2.3706 -6.0557 -0.0048 13 6 1.6602 -7.2032 0.7159 14 6 2.5596 -8.4408 0.7149 15 6 2.8590 -8.8524 -0.7280 16 6 3.7455 -10.0712 -0.7291 17 8 4.1017 -10.5600 0.3169 18 8 4.1402 -10.6129 -1.8920 19 6 3.5695 -7.7050 -1.4487 20 6 2.6694 -6.4671 -1.4478 21 1 -0.4850 0.8401 0.0004 22 1 0.6246 -2.5562 -0.8919 23 1 0.6240 -2.5574 0.8881 24 1 2.8719 -3.6051 0.8873 25 1 2.8718 -3.6036 -0.8927 26 1 3.3045 -5.8270 0.5087 27 1 0.7262 -7.4319 0.2025 28 1 1.4472 -6.9101 1.7440 29 1 2.0533 -9.2584 1.2279 30 1 3.4934 -8.2118 1.2285 31 1 1.9253 -9.0814 -1.2417 32 1 4.7086 -11.3937 -1.8420 33 1 4.5032 -7.4759 -0.9350 34 1 3.7824 -7.9980 -2.4768 35 1 1.7356 -6.6959 -1.9612 36 1 3.1756 -5.6496 -1.9613 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000168140709.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:05:19 Heat of formation + Delta-G solvation = -173.742449 kcal Electronic energy + Delta-G solvation = -17296.387999 eV Core-core repulsion = 14358.195379 eV Total energy + Delta-G solvation = -2938.192620 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 242.135 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.77568 -38.72066 -36.54017 -36.04384 -33.20577 -31.01982 -30.71150 -29.23799 -24.87723 -23.86367 -22.83096 -21.15256 -20.89119 -19.81796 -18.25498 -17.00577 -16.68498 -16.12332 -15.60380 -15.01632 -14.78808 -14.41230 -14.10442 -13.76321 -13.22432 -13.04697 -12.44572 -12.31418 -12.27857 -11.81739 -11.68922 -11.40745 -11.24291 -11.09336 -10.91134 -10.76028 -10.62818 -10.45065 -10.19543 -10.09441 -9.45733 -9.19939 -8.82433 -8.35570 -6.03317 -4.06961 1.95050 2.77931 3.30690 3.36648 3.39803 4.14277 4.40057 4.46612 4.52220 4.82485 5.05077 5.14782 5.17647 5.29627 5.32764 5.35199 5.40050 5.68450 5.74034 5.83752 5.90049 6.07436 6.09620 6.20740 6.22335 6.24352 6.39914 6.41117 6.89657 7.55957 7.63234 7.79325 7.83889 8.12303 8.36207 8.99757 9.56823 11.08322 Molecular weight = 242.14amu Principal moments of inertia in cm(-1) A = 0.059580 B = 0.003702 C = 0.003624 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 469.846330 B = 7561.151884 C = 7724.162151 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.059 3.941 3 Si 0.896 3.104 4 H -0.280 1.280 5 H -0.285 1.285 6 H -0.273 1.273 7 C -0.524 4.524 8 H 0.056 0.944 9 C 0.025 3.975 10 C 0.069 3.931 11 O -0.384 6.384 12 C 0.085 3.915 13 C -0.115 4.115 14 C -0.100 4.100 15 C -0.081 4.081 16 C 0.483 3.517 17 O -0.517 6.517 18 O -0.516 6.516 19 C -0.107 4.107 20 C -0.140 4.140 21 H 0.262 0.738 22 H 0.024 0.976 23 H 0.024 0.976 24 H 0.034 0.966 25 H 0.034 0.966 26 H 0.055 0.945 27 H 0.073 0.927 28 H 0.076 0.924 29 H 0.075 0.925 30 H 0.073 0.927 31 H 0.112 0.888 32 H 0.407 0.593 33 H 0.068 0.932 34 H 0.078 0.922 35 H 0.074 0.926 36 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.737 -19.185 -2.998 20.553 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.143 4.143 3 Si 0.724 3.276 4 H -0.206 1.206 5 H -0.211 1.211 6 H -0.198 1.198 7 C -0.562 4.562 8 H 0.074 0.926 9 C -0.012 4.012 10 C -0.007 4.007 11 O -0.304 6.304 12 C 0.027 3.973 13 C -0.153 4.153 14 C -0.138 4.138 15 C -0.100 4.100 16 C 0.326 3.674 17 O -0.405 6.405 18 O -0.328 6.328 19 C -0.144 4.144 20 C -0.178 4.178 21 H 0.071 0.929 22 H 0.042 0.958 23 H 0.042 0.958 24 H 0.052 0.948 25 H 0.052 0.948 26 H 0.074 0.926 27 H 0.092 0.908 28 H 0.095 0.905 29 H 0.094 0.906 30 H 0.091 0.909 31 H 0.130 0.870 32 H 0.266 0.734 33 H 0.086 0.914 34 H 0.096 0.904 35 H 0.093 0.907 36 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 6.226 -18.850 -2.723 20.037 hybrid contribution 1.145 0.391 -0.028 1.210 sum 7.371 -18.459 -2.751 20.066 Atomic orbital electron populations 1.69983 1.06070 1.26754 1.50177 1.24995 0.94877 0.99291 0.95133 0.86532 0.79772 0.83182 0.78146 1.20578 1.21118 1.19828 1.21059 0.92996 0.90610 1.51568 0.92584 1.19070 0.94259 0.89485 0.98414 1.22913 0.96335 0.83338 0.98092 1.87962 1.33934 1.13653 1.94841 1.21993 0.93874 0.87138 0.94324 1.21586 0.98874 0.93029 1.01809 1.21433 1.01125 0.98030 0.93211 1.21188 0.98287 0.90290 1.00220 1.23685 0.78431 0.84575 0.80757 1.90716 1.54268 1.62063 1.33420 1.84561 1.65106 1.46979 1.36135 1.21511 0.98701 0.93470 1.00751 1.22062 1.00270 0.96953 0.98536 0.92851 0.95774 0.95759 0.94750 0.94751 0.92648 0.90840 0.90514 0.90617 0.90860 0.87016 0.73402 0.91372 0.90361 0.90713 0.90862 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.95 13.29 55.43 0.74 -26.21 16 2 C 0.06 1.69 5.46 -17.82 -0.10 1.60 16 3 Si 0.90 21.55 29.54 -169.99 -5.02 16.53 16 4 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 5 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 6 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 7 C -0.52 -14.93 9.11 -34.44 -0.31 -15.25 16 8 H 0.06 1.53 7.74 -52.49 -0.41 1.12 16 9 C 0.02 0.67 5.34 -27.88 -0.15 0.52 16 10 C 0.07 1.49 5.69 37.16 0.21 1.71 16 11 O -0.38 -7.57 9.99 -35.23 -0.35 -7.92 16 12 C 0.09 1.25 2.61 -26.73 -0.07 1.18 16 13 C -0.12 -1.41 5.57 -26.73 -0.15 -1.56 16 14 C -0.10 -1.05 4.49 -26.73 -0.12 -1.17 16 15 C -0.08 -0.77 2.63 -91.77 -0.24 -1.01 16 16 C 0.48 4.84 7.63 36.01 0.27 5.12 16 17 O -0.52 -6.69 16.74 -18.75 -0.31 -7.01 16 18 O -0.52 -3.92 13.32 -39.24 -0.52 -4.44 16 19 C -0.11 -1.05 5.14 -26.70 -0.14 -1.18 16 20 C -0.14 -1.74 5.54 -26.70 -0.15 -1.89 16 21 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 22 H 0.02 0.68 8.14 -51.93 -0.42 0.26 16 23 H 0.02 0.69 8.14 -51.93 -0.42 0.27 16 24 H 0.03 0.72 8.09 -51.92 -0.42 0.30 16 25 H 0.03 0.71 7.87 -51.93 -0.41 0.30 16 26 H 0.06 0.80 7.79 -51.93 -0.40 0.39 16 27 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 28 H 0.08 0.96 8.14 -51.92 -0.42 0.54 16 29 H 0.08 0.76 8.10 -51.93 -0.42 0.34 16 30 H 0.07 0.81 8.10 -51.93 -0.42 0.39 16 31 H 0.11 0.93 8.14 -51.93 -0.42 0.50 16 32 H 0.41 1.40 9.10 45.56 0.41 1.81 16 33 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.08 0.69 8.11 -51.93 -0.42 0.27 16 35 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 36 H 0.07 0.96 7.87 -51.93 -0.41 0.55 16 LS Contribution 301.48 15.07 4.54 4.54 Total: -1.00 -32.87 301.48 -6.86 -39.73 By element: Atomic # 1 Polarization: 1.71 SS G_CDS: -4.99 Total: -3.28 kcal Atomic # 6 Polarization: -11.01 SS G_CDS: -0.94 Total: -11.95 kcal Atomic # 7 Polarization: -26.95 SS G_CDS: 0.74 Total: -26.21 kcal Atomic # 8 Polarization: -18.18 SS G_CDS: -1.19 Total: -19.37 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.53 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -32.87 -6.86 -39.73 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000168140709.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -134.016 kcal (2) G-P(sol) polarization free energy of solvation -32.868 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -166.883 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.859 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.727 kcal (6) G-S(sol) free energy of system = (1) + (5) -173.742 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds