Wall clock time and date at job start Mon Mar 30 2020 04:05:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86801 * 120.00036 * 2 1 4 4 H 1.48502 * 109.46865 * 270.00003 * 3 2 1 5 5 H 1.48501 * 109.47192 * 29.99939 * 3 2 1 6 6 H 1.48503 * 109.47118 * 150.00249 * 3 2 1 7 7 C 1.37872 * 120.00100 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00288 * 179.97438 * 7 2 1 9 9 C 1.50704 * 119.99806 * 0.02562 * 7 2 1 10 10 C 1.52999 * 109.47242 * 179.97438 * 9 7 2 11 11 O 1.42903 * 109.47172 * 179.97438 * 10 9 7 12 12 C 1.42900 * 113.99726 * 179.97438 * 11 10 9 13 13 C 1.53002 * 109.46910 * 150.00525 * 12 11 10 14 14 C 1.52997 * 109.47493 * 180.02562 * 13 12 11 15 15 C 1.52996 * 109.46880 * 300.00006 * 14 13 12 16 16 C 1.50706 * 109.47215 * 179.97438 * 15 14 13 17 17 O 1.20825 * 119.99859 * 359.97438 * 16 15 14 18 18 O 1.34224 * 120.00295 * 180.02562 * 16 15 14 19 19 C 1.52998 * 109.47228 * 60.00058 * 15 14 13 20 20 C 1.52996 * 109.47332 * 270.00451 * 12 11 10 21 21 H 0.97001 * 119.99677 * 359.97438 * 1 2 3 22 22 H 1.09001 * 109.47374 * 59.99379 * 9 7 2 23 23 H 1.09007 * 109.46677 * 299.99510 * 9 7 2 24 24 H 1.09009 * 109.47230 * 59.99729 * 10 9 7 25 25 H 1.08998 * 109.47060 * 299.99684 * 10 9 7 26 26 H 1.09000 * 109.47292 * 30.01096 * 12 11 10 27 27 H 1.09003 * 109.47318 * 59.99856 * 13 12 11 28 28 H 1.09008 * 109.46908 * 300.00299 * 13 12 11 29 29 H 1.08997 * 109.47186 * 180.02562 * 14 13 12 30 30 H 1.09003 * 109.47116 * 59.99536 * 14 13 12 31 31 H 1.09000 * 109.47459 * 300.00106 * 15 14 13 32 32 H 0.96700 * 117.00196 * 179.97438 * 18 16 15 33 33 H 1.09000 * 109.47766 * 59.99578 * 19 15 14 34 34 H 1.09005 * 109.47327 * 180.02562 * 19 15 14 35 35 H 1.09000 * 109.47091 * 299.99659 * 20 12 11 36 36 H 1.08997 * 109.47192 * 60.00463 * 20 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0017 10 6 2.2452 -3.6621 -0.0027 11 8 1.5306 -4.8996 -0.0032 12 6 2.3706 -6.0557 -0.0048 13 6 1.6602 -7.2032 0.7159 14 6 2.5596 -8.4408 0.7149 15 6 2.8590 -8.8524 -0.7280 16 6 3.7455 -10.0712 -0.7291 17 8 4.1017 -10.5600 0.3169 18 8 4.1402 -10.6129 -1.8920 19 6 3.5695 -7.7050 -1.4487 20 6 2.6694 -6.4671 -1.4478 21 1 -0.4850 0.8401 0.0004 22 1 0.6246 -2.5562 -0.8919 23 1 0.6240 -2.5574 0.8881 24 1 2.8719 -3.6051 0.8873 25 1 2.8718 -3.6036 -0.8927 26 1 3.3045 -5.8270 0.5087 27 1 0.7262 -7.4319 0.2025 28 1 1.4472 -6.9101 1.7440 29 1 2.0533 -9.2584 1.2279 30 1 3.4934 -8.2118 1.2285 31 1 1.9253 -9.0814 -1.2417 32 1 4.7086 -11.3937 -1.8420 33 1 4.5032 -7.4759 -0.9350 34 1 3.7824 -7.9980 -2.4768 35 1 1.7356 -6.6959 -1.9612 36 1 3.1756 -5.6496 -1.9613 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000168140709.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:05:19 Heat of formation + Delta-G solvation = -195.409555 kcal Electronic energy + Delta-G solvation = -17297.327555 eV Core-core repulsion = 14358.195379 eV Total energy + Delta-G solvation = -2939.132176 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 242.135 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.57127 -39.86358 -37.59323 -37.01322 -35.29666 -32.40922 -31.80286 -30.76690 -26.73839 -24.96011 -23.78288 -22.80631 -22.07090 -20.75264 -18.99259 -18.71501 -17.77354 -17.20319 -17.00794 -16.56663 -16.31252 -15.85617 -15.13918 -14.60904 -14.43629 -14.37841 -14.10322 -13.70229 -13.25906 -13.05126 -12.90041 -12.76214 -12.55099 -12.44476 -12.35774 -12.10613 -12.04067 -11.52496 -11.48014 -11.43055 -11.29552 -11.20443 -10.61538 -10.23007 -8.23020 -6.36145 1.19165 1.41637 1.43915 1.55072 2.11307 2.38353 2.89257 3.10847 3.57031 3.66266 3.97142 4.08455 4.18223 4.26357 4.35565 4.46204 4.46865 4.49553 4.52430 4.77431 4.79982 4.91744 5.00727 5.06523 5.14106 5.17034 5.32236 5.35641 5.41526 5.60041 5.62627 5.74962 6.13283 6.51030 6.80085 7.00786 7.33748 8.90009 Molecular weight = 242.14amu Principal moments of inertia in cm(-1) A = 0.059580 B = 0.003702 C = 0.003624 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 469.846330 B = 7561.151884 C = 7724.162151 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.000 4.000 3 Si 0.974 3.026 4 H -0.270 1.270 5 H -0.281 1.281 6 H -0.260 1.260 7 C -0.546 4.546 8 H 0.067 0.933 9 C 0.027 3.973 10 C 0.087 3.913 11 O -0.406 6.406 12 C 0.074 3.926 13 C -0.110 4.110 14 C -0.093 4.093 15 C -0.080 4.080 16 C 0.492 3.508 17 O -0.550 6.550 18 O -0.510 6.510 19 C -0.097 4.097 20 C -0.136 4.136 21 H 0.266 0.734 22 H -0.005 1.005 23 H -0.007 1.007 24 H 0.041 0.959 25 H 0.045 0.955 26 H 0.058 0.942 27 H 0.077 0.923 28 H 0.069 0.931 29 H 0.082 0.918 30 H 0.067 0.933 31 H 0.129 0.871 32 H 0.427 0.573 33 H 0.068 0.932 34 H 0.095 0.905 35 H 0.075 0.925 36 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.283 -19.769 -3.695 21.750 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.198 4.198 3 Si 0.798 3.202 4 H -0.195 1.195 5 H -0.207 1.207 6 H -0.184 1.184 7 C -0.584 4.584 8 H 0.085 0.915 9 C -0.010 4.010 10 C 0.011 3.989 11 O -0.326 6.326 12 C 0.017 3.983 13 C -0.147 4.147 14 C -0.130 4.130 15 C -0.099 4.099 16 C 0.336 3.664 17 O -0.441 6.441 18 O -0.323 6.323 19 C -0.135 4.135 20 C -0.174 4.174 21 H 0.074 0.926 22 H 0.013 0.987 23 H 0.011 0.989 24 H 0.059 0.941 25 H 0.064 0.936 26 H 0.076 0.924 27 H 0.095 0.905 28 H 0.087 0.913 29 H 0.101 0.899 30 H 0.085 0.915 31 H 0.147 0.853 32 H 0.289 0.711 33 H 0.087 0.913 34 H 0.114 0.886 35 H 0.094 0.906 36 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 7.792 -19.471 -3.441 21.253 hybrid contribution 0.629 0.477 0.160 0.806 sum 8.422 -18.994 -3.281 21.035 Atomic orbital electron populations 1.70127 1.08022 1.28064 1.50955 1.26042 0.95816 1.03646 0.94319 0.85318 0.78567 0.77707 0.78656 1.19504 1.20686 1.18443 1.21483 0.93713 0.91527 1.51665 0.91495 1.18941 0.94657 0.91939 0.95459 1.22469 0.94669 0.82900 0.98883 1.87909 1.35354 1.14237 1.95145 1.22361 0.93646 0.85902 0.96422 1.21541 0.99252 0.92880 1.01059 1.21332 1.00380 0.97115 0.94204 1.21170 0.99084 0.90183 0.99492 1.23588 0.77791 0.84304 0.80702 1.90717 1.55580 1.63135 1.34653 1.84511 1.65221 1.47877 1.34706 1.21431 0.97962 0.92183 1.01888 1.21992 1.00872 0.97924 0.96573 0.92551 0.98689 0.98870 0.94065 0.93634 0.92400 0.90478 0.91264 0.89935 0.91471 0.85309 0.71142 0.91307 0.88640 0.90585 0.91715 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.46 13.29 21.45 0.28 -57.17 16 2 C 0.00 0.00 5.46 84.65 0.46 0.46 16 3 Si 0.97 43.98 29.54 68.60 2.03 46.01 16 4 H -0.27 -11.69 7.11 99.48 0.71 -10.99 16 5 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 6 H -0.26 -11.13 7.11 99.48 0.71 -10.42 16 7 C -0.55 -31.41 9.11 25.60 0.23 -31.18 16 8 H 0.07 3.61 7.74 -2.91 -0.02 3.59 16 9 C 0.03 1.51 5.34 29.85 0.16 1.67 16 10 C 0.09 3.80 5.69 71.98 0.41 4.21 16 11 O -0.41 -16.15 9.99 -148.98 -1.49 -17.64 16 12 C 0.07 2.12 2.61 30.59 0.08 2.20 16 13 C -0.11 -2.59 5.57 30.59 0.17 -2.42 16 14 C -0.09 -1.80 4.49 30.59 0.14 -1.66 16 15 C -0.08 -1.34 2.63 -11.54 -0.03 -1.37 16 16 C 0.49 8.70 7.63 71.24 0.54 9.24 16 17 O -0.55 -13.33 16.74 21.97 0.37 -12.96 16 18 O -0.51 -6.20 13.32 -51.35 -0.68 -6.89 16 19 C -0.10 -1.67 5.14 30.61 0.16 -1.52 16 20 C -0.14 -3.17 5.54 30.61 0.17 -3.00 16 21 H 0.27 15.26 8.31 -92.71 -0.77 14.49 16 22 H -0.01 -0.32 8.14 -2.39 -0.02 -0.34 16 23 H -0.01 -0.43 8.14 -2.38 -0.02 -0.45 16 24 H 0.04 1.73 8.09 -2.38 -0.02 1.71 16 25 H 0.05 1.87 7.87 -2.39 -0.02 1.85 16 26 H 0.06 1.62 7.79 -2.39 -0.02 1.60 16 27 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 28 H 0.07 1.73 8.14 -2.38 -0.02 1.71 16 29 H 0.08 1.52 8.10 -2.39 -0.02 1.50 16 30 H 0.07 1.40 8.10 -2.39 -0.02 1.38 16 31 H 0.13 1.75 8.14 -2.39 -0.02 1.73 16 32 H 0.43 1.69 9.10 -74.06 -0.67 1.01 16 33 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 34 H 0.10 1.37 8.11 -2.38 -0.02 1.35 16 35 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 36 H 0.06 1.62 7.87 -2.39 -0.02 1.60 16 Total: -1.00 -71.14 301.48 3.38 -67.76 By element: Atomic # 1 Polarization: 3.88 SS G_CDS: 0.38 Total: 4.26 kcal Atomic # 6 Polarization: -25.86 SS G_CDS: 2.49 Total: -23.37 kcal Atomic # 7 Polarization: -57.46 SS G_CDS: 0.28 Total: -57.17 kcal Atomic # 8 Polarization: -35.68 SS G_CDS: -1.80 Total: -37.49 kcal Atomic # 14 Polarization: 43.98 SS G_CDS: 2.03 Total: 46.01 kcal Total: -71.14 3.38 -67.76 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000168140709.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -127.649 kcal (2) G-P(sol) polarization free energy of solvation -71.143 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -198.792 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.382 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.761 kcal (6) G-S(sol) free energy of system = (1) + (5) -195.410 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds