Wall clock time and date at job start Mon Mar 30 2020 04:27:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.47055 * 2 1 4 4 H 1.09001 * 109.47232 * 304.99978 * 3 2 1 5 5 C 1.50695 * 109.47273 * 184.99676 * 3 2 1 6 6 H 1.08004 * 120.00139 * 239.99625 * 5 3 2 7 7 C 1.37882 * 119.99993 * 59.99707 * 5 3 2 8 8 N 1.31510 * 119.99861 * 0.02562 * 7 5 3 9 9 Si 1.86803 * 119.99916 * 179.97438 * 7 5 3 10 10 H 1.48497 * 109.46900 * 90.00361 * 9 7 5 11 11 H 1.48502 * 109.46850 * 210.00334 * 9 7 5 12 12 H 1.48497 * 109.47162 * 330.00019 * 9 7 5 13 13 O 1.45206 * 109.47439 * 64.99698 * 3 2 1 14 14 C 1.34230 * 116.99847 * 270.00830 * 13 3 2 15 15 O 1.20827 * 120.00067 * 359.97438 * 14 13 3 16 16 C 1.50700 * 119.99743 * 179.97438 * 14 13 3 17 17 H 1.09001 * 109.57500 * 299.83511 * 16 14 13 18 18 C 1.53176 * 109.52229 * 179.67895 * 16 14 13 19 19 C 1.53183 * 109.03838 * 183.11054 * 18 16 14 20 20 C 1.53094 * 109.15859 * 56.98139 * 19 18 16 21 21 O 1.42902 * 109.42545 * 302.39685 * 20 19 18 22 22 C 1.42904 * 114.09961 * 61.14161 * 21 20 19 23 23 H 1.08993 * 109.47352 * 299.99766 * 1 2 3 24 24 H 1.08993 * 109.47292 * 60.00471 * 1 2 3 25 25 H 1.09006 * 109.46838 * 180.02562 * 1 2 3 26 26 H 1.08992 * 109.47630 * 239.99509 * 2 1 3 27 27 H 1.09007 * 109.47285 * 119.99729 * 2 1 3 28 28 H 0.96999 * 119.99807 * 179.97438 * 8 7 5 29 29 H 1.09002 * 109.54544 * 302.98098 * 18 16 14 30 30 H 1.09003 * 109.54279 * 63.24270 * 18 16 14 31 31 H 1.08997 * 109.51813 * 176.88468 * 19 18 16 32 32 H 1.08998 * 109.52255 * 297.01444 * 19 18 16 33 33 H 1.09000 * 109.47974 * 62.37640 * 20 19 18 34 34 H 1.09001 * 109.47684 * 182.39743 * 20 19 18 35 35 H 1.09002 * 109.48241 * 178.87096 * 22 21 20 36 36 H 1.08999 * 109.47648 * 58.84690 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9815 -0.8418 5 6 3.5418 1.4443 -0.1237 6 1 4.1471 1.8890 0.6524 7 6 4.1433 0.8784 -1.2279 8 7 3.4062 0.3374 -2.1732 9 14 6.0050 0.8813 -1.3816 10 1 6.5549 -0.3501 -0.7599 11 1 6.3830 0.9224 -2.8171 12 1 6.5569 2.0739 -0.6900 13 8 1.6558 2.0918 1.2407 14 6 0.4725 2.7254 1.2559 15 8 -0.2191 2.7375 0.2652 16 6 0.0067 3.4216 2.5086 17 1 -0.0755 2.6979 3.3196 18 6 -1.3597 4.0668 2.2578 19 6 -1.7868 4.8361 3.5116 20 6 -0.7113 5.8692 3.8579 21 8 0.5404 5.2066 4.0482 22 6 1.0129 4.5093 2.8937 23 1 -0.3634 0.5138 0.8899 24 1 -0.3633 0.5137 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 1.8934 -0.5139 -0.8898 27 1 1.8934 -0.5138 0.8901 28 1 3.8294 -0.0604 -2.9501 29 1 -1.2892 4.7540 1.4146 30 1 -2.0939 3.2918 2.0377 31 1 -2.7325 5.3441 3.3227 32 1 -1.9063 4.1408 4.3425 33 1 -0.6219 6.5878 3.0433 34 1 -0.9897 6.3906 4.7738 35 1 1.9768 4.0510 3.1150 36 1 1.1250 5.2101 2.0665 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000187896234.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:27:59 Heat of formation + Delta-G solvation = -156.046784 kcal Electronic energy + Delta-G solvation = -18280.164076 eV Core-core repulsion = 15342.738798 eV Total energy + Delta-G solvation = -2937.425279 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 242.135 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.15680 -38.70587 -35.89265 -33.61078 -33.46631 -31.62728 -31.10962 -27.33953 -25.15022 -24.48206 -23.14772 -21.37688 -20.05538 -19.32086 -17.19366 -16.63716 -16.31051 -16.07879 -15.33911 -15.16280 -14.56941 -14.43320 -13.84886 -13.33461 -12.90721 -12.78049 -12.55595 -12.24067 -11.58322 -11.44504 -11.31640 -11.18465 -11.14961 -11.00166 -10.93793 -10.64103 -10.38855 -10.29045 -9.81765 -9.68608 -9.48241 -9.32747 -8.82285 -8.46514 -6.19658 -4.26850 2.95009 3.24004 3.29488 3.32833 3.54656 3.94384 4.32768 4.66828 4.81174 4.88555 4.93141 5.12371 5.18364 5.33956 5.54000 5.67056 5.70358 5.79592 5.87706 5.95292 6.13657 6.21146 6.26129 6.27927 6.44378 6.85522 6.94564 7.11347 7.15192 7.25024 7.60615 7.72336 7.93547 8.14628 8.62022 8.87767 9.38577 10.87121 Molecular weight = 242.14amu Principal moments of inertia in cm(-1) A = 0.032835 B = 0.006265 C = 0.005499 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 852.531569 B = 4468.516788 C = 5090.429429 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.136 4.136 3 C 0.221 3.779 4 H 0.047 0.953 5 C -0.522 4.522 6 H 0.069 0.931 7 C 0.063 3.937 8 N -0.888 5.888 9 Si 0.911 3.089 10 H -0.278 1.278 11 H -0.284 1.284 12 H -0.271 1.271 13 O -0.354 6.354 14 C 0.457 3.543 15 O -0.514 6.514 16 C -0.119 4.119 17 H 0.109 0.891 18 C -0.106 4.106 19 C -0.154 4.154 20 C 0.055 3.945 21 O -0.378 6.378 22 C 0.073 3.927 23 H 0.031 0.969 24 H 0.053 0.947 25 H 0.033 0.967 26 H 0.109 0.891 27 H 0.042 0.958 28 H 0.266 0.734 29 H 0.073 0.927 30 H 0.075 0.925 31 H 0.076 0.924 32 H 0.072 0.928 33 H 0.051 0.949 34 H 0.093 0.907 35 H 0.112 0.888 36 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.574 6.915 9.455 13.949 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.174 4.174 3 C 0.168 3.832 4 H 0.064 0.936 5 C -0.560 4.560 6 H 0.087 0.913 7 C -0.139 4.139 8 N -0.526 5.526 9 Si 0.738 3.262 10 H -0.203 1.203 11 H -0.210 1.210 12 H -0.196 1.196 13 O -0.271 6.271 14 C 0.300 3.700 15 O -0.404 6.404 16 C -0.138 4.138 17 H 0.127 0.873 18 C -0.144 4.144 19 C -0.192 4.192 20 C -0.021 4.021 21 O -0.297 6.297 22 C -0.004 4.004 23 H 0.050 0.950 24 H 0.072 0.928 25 H 0.052 0.948 26 H 0.127 0.873 27 H 0.060 0.940 28 H 0.076 0.924 29 H 0.092 0.908 30 H 0.094 0.906 31 H 0.095 0.905 32 H 0.091 0.909 33 H 0.069 0.931 34 H 0.111 0.889 35 H 0.130 0.870 36 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -7.614 6.800 9.117 13.687 hybrid contribution 0.631 -0.247 -0.577 0.890 sum -6.983 6.553 8.540 12.831 Atomic orbital electron populations 1.21855 0.98421 0.98992 1.00686 1.22020 0.92599 0.99399 1.03385 1.20683 0.95038 0.88776 0.78668 0.93562 1.21046 0.89664 1.38994 1.06249 0.91300 1.24886 0.99238 0.94752 0.95048 1.69889 1.35392 1.37838 1.09476 0.86287 0.83899 0.78711 0.77339 1.20338 1.20982 1.19607 1.86478 1.34113 1.62316 1.44152 1.23019 0.80933 0.77016 0.89067 1.90603 1.55491 1.58597 1.35686 1.21677 0.97320 0.98943 0.95893 0.87284 1.21472 0.94943 1.00194 0.97769 1.22215 0.99236 0.99196 0.98560 1.22628 0.83886 0.93924 1.01705 1.87964 1.37019 1.68426 1.36244 1.22532 0.96830 0.92394 0.88619 0.95030 0.92836 0.94809 0.87329 0.93956 0.92386 0.90799 0.90616 0.90537 0.90896 0.93060 0.88885 0.87002 0.92496 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.12 8.57 37.16 0.32 -2.81 16 2 C -0.14 -3.38 5.49 -26.73 -0.15 -3.53 16 3 C 0.22 5.83 2.25 -27.89 -0.06 5.76 16 4 H 0.05 1.35 7.16 -51.93 -0.37 0.98 16 5 C -0.52 -14.48 8.90 -34.44 -0.31 -14.79 16 6 H 0.07 1.88 7.81 -52.48 -0.41 1.47 16 7 C 0.06 1.72 5.29 -17.82 -0.09 1.62 16 8 N -0.89 -24.98 11.29 55.43 0.63 -24.36 16 9 Si 0.91 20.94 29.54 -169.99 -5.02 15.91 16 10 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 11 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 12 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 13 O -0.35 -8.27 9.74 -39.26 -0.38 -8.65 16 14 C 0.46 9.32 5.72 36.01 0.21 9.52 16 15 O -0.51 -11.64 13.11 -18.75 -0.25 -11.88 16 16 C -0.12 -1.82 2.83 -91.63 -0.26 -2.08 16 17 H 0.11 1.55 8.14 -51.93 -0.42 1.13 16 18 C -0.11 -1.40 4.62 -26.55 -0.12 -1.52 16 19 C -0.15 -1.56 6.14 -26.59 -0.16 -1.72 16 20 C 0.06 0.58 6.84 37.21 0.25 0.83 16 21 O -0.38 -5.11 10.77 -35.23 -0.38 -5.49 16 22 C 0.07 1.06 6.06 37.21 0.23 1.28 16 23 H 0.03 0.66 6.06 -51.93 -0.31 0.35 16 24 H 0.05 1.23 7.80 -51.93 -0.40 0.83 16 25 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 26 H 0.11 2.92 5.95 -51.93 -0.31 2.61 16 27 H 0.04 1.02 8.14 -51.93 -0.42 0.60 16 28 H 0.27 7.06 8.31 -40.82 -0.34 6.73 16 29 H 0.07 1.03 8.03 -51.93 -0.42 0.61 16 30 H 0.08 1.02 8.14 -51.93 -0.42 0.59 16 31 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 34 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.11 1.65 8.14 -51.93 -0.42 1.23 16 36 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 LS Contribution 290.99 15.07 4.39 4.39 Total: -1.00 -29.75 290.99 -6.76 -36.51 By element: Atomic # 1 Polarization: 6.58 SS G_CDS: -5.59 Total: 0.99 kcal Atomic # 6 Polarization: -7.27 SS G_CDS: -0.15 Total: -7.42 kcal Atomic # 7 Polarization: -24.98 SS G_CDS: 0.63 Total: -24.36 kcal Atomic # 8 Polarization: -25.02 SS G_CDS: -1.01 Total: -26.02 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.91 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -29.75 -6.76 -36.51 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000187896234.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -119.537 kcal (2) G-P(sol) polarization free energy of solvation -29.752 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.289 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.758 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.510 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.047 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds