Wall clock time and date at job start Mon Mar 30 2020 04:27:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.47055 * 2 1 4 4 H 1.09001 * 109.47232 * 304.99978 * 3 2 1 5 5 C 1.50695 * 109.47273 * 184.99676 * 3 2 1 6 6 H 1.08004 * 120.00139 * 239.99625 * 5 3 2 7 7 C 1.37882 * 119.99993 * 59.99707 * 5 3 2 8 8 N 1.31510 * 119.99861 * 0.02562 * 7 5 3 9 9 Si 1.86803 * 119.99916 * 179.97438 * 7 5 3 10 10 H 1.48497 * 109.46900 * 90.00361 * 9 7 5 11 11 H 1.48502 * 109.46850 * 210.00334 * 9 7 5 12 12 H 1.48497 * 109.47162 * 330.00019 * 9 7 5 13 13 O 1.45206 * 109.47439 * 64.99698 * 3 2 1 14 14 C 1.34230 * 116.99847 * 270.00830 * 13 3 2 15 15 O 1.20827 * 120.00067 * 359.97438 * 14 13 3 16 16 C 1.50700 * 119.99743 * 179.97438 * 14 13 3 17 17 H 1.09001 * 109.57500 * 299.83511 * 16 14 13 18 18 C 1.53176 * 109.52229 * 179.67895 * 16 14 13 19 19 C 1.53183 * 109.03838 * 183.11054 * 18 16 14 20 20 C 1.53094 * 109.15859 * 56.98139 * 19 18 16 21 21 O 1.42902 * 109.42545 * 302.39685 * 20 19 18 22 22 C 1.42904 * 114.09961 * 61.14161 * 21 20 19 23 23 H 1.08993 * 109.47352 * 299.99766 * 1 2 3 24 24 H 1.08993 * 109.47292 * 60.00471 * 1 2 3 25 25 H 1.09006 * 109.46838 * 180.02562 * 1 2 3 26 26 H 1.08992 * 109.47630 * 239.99509 * 2 1 3 27 27 H 1.09007 * 109.47285 * 119.99729 * 2 1 3 28 28 H 0.96999 * 119.99807 * 179.97438 * 8 7 5 29 29 H 1.09002 * 109.54544 * 302.98098 * 18 16 14 30 30 H 1.09003 * 109.54279 * 63.24270 * 18 16 14 31 31 H 1.08997 * 109.51813 * 176.88468 * 19 18 16 32 32 H 1.08998 * 109.52255 * 297.01444 * 19 18 16 33 33 H 1.09000 * 109.47974 * 62.37640 * 20 19 18 34 34 H 1.09001 * 109.47684 * 182.39743 * 20 19 18 35 35 H 1.09002 * 109.48241 * 178.87096 * 22 21 20 36 36 H 1.08999 * 109.47648 * 58.84690 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9815 -0.8418 5 6 3.5418 1.4443 -0.1237 6 1 4.1471 1.8890 0.6524 7 6 4.1433 0.8784 -1.2279 8 7 3.4062 0.3374 -2.1732 9 14 6.0050 0.8813 -1.3816 10 1 6.5549 -0.3501 -0.7599 11 1 6.3830 0.9224 -2.8171 12 1 6.5569 2.0739 -0.6900 13 8 1.6558 2.0918 1.2407 14 6 0.4725 2.7254 1.2559 15 8 -0.2191 2.7375 0.2652 16 6 0.0067 3.4216 2.5086 17 1 -0.0755 2.6979 3.3196 18 6 -1.3597 4.0668 2.2578 19 6 -1.7868 4.8361 3.5116 20 6 -0.7113 5.8692 3.8579 21 8 0.5404 5.2066 4.0482 22 6 1.0129 4.5093 2.8937 23 1 -0.3634 0.5138 0.8899 24 1 -0.3633 0.5137 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 1.8934 -0.5139 -0.8898 27 1 1.8934 -0.5138 0.8901 28 1 3.8294 -0.0604 -2.9501 29 1 -1.2892 4.7540 1.4146 30 1 -2.0939 3.2918 2.0377 31 1 -2.7325 5.3441 3.3227 32 1 -1.9063 4.1408 4.3425 33 1 -0.6219 6.5878 3.0433 34 1 -0.9897 6.3906 4.7738 35 1 1.9768 4.0510 3.1150 36 1 1.1250 5.2101 2.0665 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000187896234.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:27:58 Heat of formation + Delta-G solvation = -173.626418 kcal Electronic energy + Delta-G solvation = -18280.926387 eV Core-core repulsion = 15342.738798 eV Total energy + Delta-G solvation = -2938.187589 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 242.135 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.70905 -39.96525 -37.69758 -35.53196 -34.67202 -33.40949 -32.37772 -29.34511 -26.28708 -25.78154 -24.97950 -22.82929 -21.62479 -20.86248 -18.97374 -18.46573 -17.59562 -17.54043 -16.82604 -16.58307 -16.24545 -15.66364 -15.14935 -14.86084 -14.59126 -14.19307 -13.94735 -13.61863 -13.36443 -13.26291 -13.09919 -12.85693 -12.63558 -12.53070 -12.17119 -12.15437 -11.92410 -11.78360 -11.47100 -11.41978 -11.17996 -10.83850 -10.58183 -10.50159 -8.28088 -6.44875 1.30155 1.41840 1.43426 1.54477 1.97651 2.40384 2.89964 3.01743 3.53434 3.69928 3.83774 3.97008 4.09757 4.21621 4.35153 4.37669 4.44767 4.55474 4.58465 4.73951 4.78694 4.81527 4.90201 5.01612 5.06145 5.09725 5.19497 5.29453 5.36771 5.51014 5.65826 5.96762 6.10378 6.15274 6.60001 6.97400 7.26894 8.78692 Molecular weight = 242.14amu Principal moments of inertia in cm(-1) A = 0.032835 B = 0.006265 C = 0.005499 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 852.531569 B = 4468.516788 C = 5090.429429 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.131 4.131 3 C 0.224 3.776 4 H 0.006 0.994 5 C -0.550 4.550 6 H 0.066 0.934 7 C 0.018 3.982 8 N -0.915 5.915 9 Si 0.980 3.020 10 H -0.267 1.267 11 H -0.278 1.278 12 H -0.266 1.266 13 O -0.362 6.362 14 C 0.452 3.548 15 O -0.539 6.539 16 C -0.110 4.110 17 H 0.125 0.875 18 C -0.105 4.105 19 C -0.144 4.144 20 C 0.046 3.954 21 O -0.386 6.386 22 C 0.079 3.921 23 H 0.037 0.963 24 H 0.035 0.965 25 H 0.061 0.939 26 H 0.086 0.914 27 H 0.046 0.954 28 H 0.270 0.730 29 H 0.062 0.938 30 H 0.072 0.928 31 H 0.102 0.898 32 H 0.081 0.919 33 H 0.055 0.945 34 H 0.122 0.878 35 H 0.104 0.896 36 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.785 7.415 10.967 15.358 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.169 4.169 3 C 0.171 3.829 4 H 0.024 0.976 5 C -0.587 4.587 6 H 0.084 0.916 7 C -0.182 4.182 8 N -0.553 5.553 9 Si 0.803 3.197 10 H -0.192 1.192 11 H -0.203 1.203 12 H -0.190 1.190 13 O -0.278 6.278 14 C 0.297 3.703 15 O -0.430 6.430 16 C -0.129 4.129 17 H 0.143 0.857 18 C -0.143 4.143 19 C -0.182 4.182 20 C -0.030 4.030 21 O -0.305 6.305 22 C 0.002 3.998 23 H 0.056 0.944 24 H 0.054 0.946 25 H 0.080 0.920 26 H 0.104 0.896 27 H 0.064 0.936 28 H 0.080 0.920 29 H 0.081 0.919 30 H 0.091 0.909 31 H 0.120 0.880 32 H 0.100 0.900 33 H 0.074 0.926 34 H 0.139 0.861 35 H 0.122 0.878 36 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -7.848 7.312 10.648 15.114 hybrid contribution 0.613 -0.348 -1.042 1.258 sum -7.235 6.964 9.606 13.897 Atomic orbital electron populations 1.21709 0.96266 1.00625 1.00065 1.21873 0.94492 0.98152 1.02350 1.20376 0.94571 0.89289 0.78662 0.97578 1.21338 0.90529 1.39964 1.06904 0.91557 1.25789 1.04168 0.93869 0.94347 1.70010 1.37428 1.37964 1.09871 0.85228 0.77792 0.79125 0.77560 1.19246 1.20330 1.19008 1.86473 1.35942 1.62899 1.42516 1.24070 0.79562 0.76182 0.90536 1.90588 1.55854 1.59365 1.37204 1.21809 0.98627 0.99159 0.93312 0.85706 1.21513 0.93408 1.00114 0.99257 1.22195 1.00124 0.98985 0.96880 1.22939 0.82602 0.94004 1.03461 1.87963 1.38644 1.68407 1.35443 1.22369 0.96335 0.92099 0.89013 0.94436 0.94576 0.91966 0.89564 0.93569 0.92044 0.91947 0.90941 0.87961 0.90019 0.92619 0.86051 0.87755 0.92957 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.69 8.57 71.98 0.62 -5.07 16 2 C -0.13 -6.61 5.49 30.59 0.17 -6.44 16 3 C 0.22 12.23 2.25 29.85 0.07 12.30 16 4 H 0.01 0.39 7.16 -2.39 -0.02 0.38 16 5 C -0.55 -31.20 8.90 25.60 0.23 -30.97 16 6 H 0.07 3.69 7.81 -2.91 -0.02 3.67 16 7 C 0.02 0.99 5.29 84.66 0.45 1.44 16 8 N -0.91 -52.40 11.29 21.45 0.24 -52.16 16 9 Si 0.98 42.87 29.54 68.60 2.03 44.90 16 10 H -0.27 -11.22 7.11 99.48 0.71 -10.52 16 11 H -0.28 -11.81 7.11 99.48 0.71 -11.11 16 12 H -0.27 -11.30 7.11 99.48 0.71 -10.60 16 13 O -0.36 -17.26 9.74 -51.42 -0.50 -17.76 16 14 C 0.45 18.66 5.72 71.24 0.41 19.07 16 15 O -0.54 -25.04 13.11 21.96 0.29 -24.75 16 16 C -0.11 -3.26 2.83 -11.45 -0.03 -3.29 16 17 H 0.13 3.34 8.14 -2.39 -0.02 3.32 16 18 C -0.11 -2.62 4.62 30.71 0.14 -2.48 16 19 C -0.14 -2.46 6.14 30.69 0.19 -2.27 16 20 C 0.05 0.82 6.84 72.01 0.49 1.31 16 21 O -0.39 -9.62 10.77 -148.98 -1.60 -11.22 16 22 C 0.08 2.22 6.06 72.01 0.44 2.66 16 23 H 0.04 1.57 6.06 -2.39 -0.01 1.55 16 24 H 0.04 1.68 7.80 -2.39 -0.02 1.66 16 25 H 0.06 2.34 8.14 -2.38 -0.02 2.32 16 26 H 0.09 4.77 5.95 -2.39 -0.01 4.75 16 27 H 0.05 2.25 8.14 -2.38 -0.02 2.23 16 28 H 0.27 14.48 8.31 -92.71 -0.77 13.71 16 29 H 0.06 1.69 8.03 -2.39 -0.02 1.67 16 30 H 0.07 1.84 8.14 -2.39 -0.02 1.83 16 31 H 0.10 1.28 8.14 -2.39 -0.02 1.26 16 32 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 33 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 34 H 0.12 1.53 8.14 -2.39 -0.02 1.51 16 35 H 0.10 3.06 8.14 -2.39 -0.02 3.04 16 36 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 Total: -1.00 -65.03 290.99 4.66 -60.36 By element: Atomic # 1 Polarization: 13.32 SS G_CDS: 1.05 Total: 14.37 kcal Atomic # 6 Polarization: -16.91 SS G_CDS: 3.16 Total: -13.74 kcal Atomic # 7 Polarization: -52.40 SS G_CDS: 0.24 Total: -52.16 kcal Atomic # 8 Polarization: -51.92 SS G_CDS: -1.82 Total: -53.73 kcal Atomic # 14 Polarization: 42.87 SS G_CDS: 2.03 Total: 44.90 kcal Total: -65.03 4.66 -60.36 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000187896234.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -113.263 kcal (2) G-P(sol) polarization free energy of solvation -65.026 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -178.289 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.663 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.364 kcal (6) G-S(sol) free energy of system = (1) + (5) -173.626 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds