Wall clock time and date at job start Mon Mar 30 2020 04:28:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53000 * 109.46846 * 2 1 4 4 H 1.09002 * 109.47398 * 305.00335 * 3 2 1 5 5 C 1.50703 * 109.46912 * 185.00257 * 3 2 1 6 6 H 1.08003 * 119.99742 * 240.00283 * 5 3 2 7 7 C 1.37873 * 119.99873 * 60.00145 * 5 3 2 8 8 N 1.31509 * 120.00433 * 359.97438 * 7 5 3 9 9 Si 1.86803 * 119.99975 * 179.97438 * 7 5 3 10 10 H 1.48504 * 109.46979 * 0.02562 * 9 7 5 11 11 H 1.48498 * 109.47371 * 119.99948 * 9 7 5 12 12 H 1.48496 * 109.47443 * 240.00340 * 9 7 5 13 13 O 1.45200 * 109.47046 * 65.00427 * 3 2 1 14 14 C 1.34226 * 116.99763 * 269.99575 * 13 3 2 15 15 O 1.20821 * 120.00149 * 0.02562 * 14 13 3 16 16 C 1.50709 * 119.99734 * 179.97438 * 14 13 3 17 17 H 1.09001 * 109.51943 * 60.00675 * 16 14 13 18 18 C 1.53184 * 109.51858 * 180.12759 * 16 14 13 19 19 C 1.53175 * 109.03204 * 176.88678 * 18 16 14 20 20 C 1.53087 * 109.16589 * 303.01927 * 19 18 16 21 21 O 1.42904 * 109.41566 * 57.61092 * 20 19 18 22 22 C 1.42914 * 114.15384 * 298.87433 * 21 20 19 23 23 H 1.08996 * 109.46751 * 179.97438 * 1 2 3 24 24 H 1.09002 * 109.46824 * 299.99583 * 1 2 3 25 25 H 1.09001 * 109.47241 * 59.99481 * 1 2 3 26 26 H 1.09002 * 109.46824 * 240.00417 * 2 1 3 27 27 H 1.08991 * 109.47210 * 120.00501 * 2 1 3 28 28 H 0.97001 * 120.00323 * 179.97438 * 8 7 5 29 29 H 1.09004 * 109.54280 * 296.75058 * 18 16 14 30 30 H 1.08995 * 109.54146 * 56.93256 * 18 16 14 31 31 H 1.09003 * 109.52316 * 62.92522 * 19 18 16 32 32 H 1.08995 * 109.52134 * 183.04686 * 19 18 16 33 33 H 1.09001 * 109.48379 * 177.58929 * 20 19 18 34 34 H 1.09002 * 109.48107 * 297.62761 * 20 19 18 35 35 H 1.09001 * 109.42719 * 301.11504 * 22 21 20 36 36 H 1.09001 * 109.53956 * 181.07564 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 -0.8418 5 6 3.5419 1.4443 -0.1239 6 1 4.1472 1.8889 0.6523 7 6 4.1432 0.8785 -1.2281 8 7 3.4062 0.3367 -2.1729 9 14 6.0049 0.8814 -1.3820 10 1 6.5987 1.5464 -0.1944 11 1 6.4971 -0.5173 -1.4632 12 1 6.3989 1.6169 -2.6103 13 8 1.6559 2.0916 1.2407 14 6 0.4728 2.7254 1.2560 15 8 -0.2192 2.7369 0.2657 16 6 0.0070 3.4215 2.5089 17 1 0.7234 4.1960 2.7830 18 6 -1.3645 4.0573 2.2614 19 6 -1.8619 4.6942 3.5627 20 6 -1.9055 3.6275 4.6598 21 8 -0.6057 3.0551 4.8177 22 6 -0.1072 2.4041 3.6471 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8901 25 1 -0.3634 0.5139 -0.8899 26 1 1.8934 -0.5138 -0.8901 27 1 1.8934 -0.5139 0.8899 28 1 3.8292 -0.0611 -2.9499 29 1 -1.2776 4.8231 1.4906 30 1 -2.0683 3.2911 1.9367 31 1 -1.1835 5.4942 3.8592 32 1 -2.8611 5.1020 3.4099 33 1 -2.2179 4.0843 5.5988 34 1 -2.6145 2.8480 4.3809 35 1 -0.7922 1.6079 3.3556 36 1 0.8751 1.9804 3.8560 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000187896286.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:28:04 Heat of formation + Delta-G solvation = -156.036885 kcal Electronic energy + Delta-G solvation = -18326.947348 eV Core-core repulsion = 15389.522499 eV Total energy + Delta-G solvation = -2937.424849 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 242.135 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.16961 -38.70686 -35.89619 -33.61235 -33.46833 -31.60155 -31.16643 -27.33132 -25.15481 -24.49631 -23.15687 -21.40077 -20.05247 -19.31327 -17.19406 -16.62524 -16.33588 -16.13516 -15.30729 -15.17188 -14.61896 -14.37734 -13.82791 -13.30524 -12.98898 -12.84124 -12.64913 -12.03112 -11.69631 -11.46386 -11.30983 -11.17000 -11.15141 -11.00886 -10.93108 -10.65803 -10.39739 -10.28370 -9.84015 -9.67165 -9.48155 -9.33883 -8.81444 -8.47047 -6.19799 -4.26834 2.95133 3.22786 3.29631 3.34136 3.54192 3.92788 4.32858 4.66230 4.80714 4.87864 4.91990 5.12264 5.16791 5.32839 5.53091 5.65930 5.68031 5.79171 5.87524 5.94395 6.12869 6.19899 6.26102 6.26793 6.43415 6.84552 6.93967 7.09540 7.14703 7.24630 7.60774 7.72190 7.93538 8.14560 8.62130 8.88133 9.38702 10.87030 Molecular weight = 242.14amu Principal moments of inertia in cm(-1) A = 0.038808 B = 0.005862 C = 0.005600 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 721.323763 B = 4775.068572 C = 4998.707784 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.136 4.136 3 C 0.220 3.780 4 H 0.047 0.953 5 C -0.521 4.521 6 H 0.069 0.931 7 C 0.063 3.937 8 N -0.888 5.888 9 Si 0.910 3.090 10 H -0.270 1.270 11 H -0.281 1.281 12 H -0.282 1.282 13 O -0.354 6.354 14 C 0.457 3.543 15 O -0.514 6.514 16 C -0.119 4.119 17 H 0.110 0.890 18 C -0.106 4.106 19 C -0.155 4.155 20 C 0.056 3.944 21 O -0.378 6.378 22 C 0.074 3.926 23 H 0.033 0.967 24 H 0.030 0.970 25 H 0.052 0.948 26 H 0.109 0.891 27 H 0.042 0.958 28 H 0.266 0.734 29 H 0.076 0.924 30 H 0.073 0.927 31 H 0.073 0.927 32 H 0.076 0.924 33 H 0.093 0.907 34 H 0.051 0.949 35 H 0.055 0.945 36 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.686 4.857 10.218 14.263 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.174 4.174 3 C 0.168 3.832 4 H 0.064 0.936 5 C -0.559 4.559 6 H 0.087 0.913 7 C -0.139 4.139 8 N -0.526 5.526 9 Si 0.737 3.263 10 H -0.195 1.195 11 H -0.207 1.207 12 H -0.208 1.208 13 O -0.271 6.271 14 C 0.300 3.700 15 O -0.404 6.404 16 C -0.139 4.139 17 H 0.128 0.872 18 C -0.144 4.144 19 C -0.192 4.192 20 C -0.021 4.021 21 O -0.296 6.296 22 C -0.003 4.003 23 H 0.052 0.948 24 H 0.049 0.951 25 H 0.072 0.928 26 H 0.127 0.873 27 H 0.061 0.939 28 H 0.076 0.924 29 H 0.094 0.906 30 H 0.092 0.908 31 H 0.091 0.909 32 H 0.095 0.905 33 H 0.111 0.889 34 H 0.069 0.931 35 H 0.074 0.926 36 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -8.725 4.738 9.887 14.012 hybrid contribution 0.726 -0.055 -0.663 0.985 sum -7.999 4.684 9.224 13.077 Atomic orbital electron populations 1.21861 0.98438 0.98984 1.00666 1.22019 0.92569 0.99367 1.03411 1.20691 0.95067 0.88772 0.78689 0.93572 1.21088 0.89685 1.38851 1.06239 0.91262 1.24884 0.99248 0.94749 0.95062 1.69896 1.35313 1.37920 1.09489 0.86238 0.83907 0.77897 0.78223 1.19461 1.20700 1.20764 1.86477 1.34161 1.62305 1.44110 1.23019 0.80889 0.76962 0.89160 1.90601 1.55610 1.58284 1.35885 1.21684 0.99328 0.99732 0.93150 0.87166 1.21468 0.94668 1.00871 0.97363 1.22213 1.02279 0.99150 0.95579 1.22628 0.85106 0.95201 0.99174 1.87960 1.33145 1.73768 1.34768 1.22521 1.01061 0.92643 0.84065 0.94792 0.95069 0.92840 0.87323 0.93930 0.92441 0.90562 0.90843 0.90854 0.90523 0.88862 0.93096 0.92647 0.87081 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.09 8.57 37.16 0.32 -2.77 16 2 C -0.14 -3.34 5.49 -26.73 -0.15 -3.49 16 3 C 0.22 5.81 2.25 -27.88 -0.06 5.75 16 4 H 0.05 1.36 7.16 -51.93 -0.37 0.98 16 5 C -0.52 -14.50 8.90 -34.44 -0.31 -14.81 16 6 H 0.07 1.91 7.81 -52.48 -0.41 1.50 16 7 C 0.06 1.71 5.29 -17.82 -0.09 1.62 16 8 N -0.89 -25.00 11.29 55.43 0.63 -24.38 16 9 Si 0.91 20.98 29.54 -169.99 -5.02 15.96 16 10 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 11 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 12 H -0.28 -6.44 7.11 56.52 0.40 -6.03 16 13 O -0.35 -8.27 9.74 -39.25 -0.38 -8.65 16 14 C 0.46 9.32 5.72 36.01 0.21 9.52 16 15 O -0.51 -11.64 13.11 -18.75 -0.25 -11.89 16 16 C -0.12 -1.83 2.83 -91.63 -0.26 -2.09 16 17 H 0.11 1.59 8.14 -51.93 -0.42 1.17 16 18 C -0.11 -1.40 4.63 -26.55 -0.12 -1.52 16 19 C -0.15 -1.56 6.14 -26.60 -0.16 -1.72 16 20 C 0.06 0.57 6.84 37.20 0.25 0.83 16 21 O -0.38 -5.03 10.76 -35.23 -0.38 -5.41 16 22 C 0.07 1.05 6.06 37.20 0.23 1.27 16 23 H 0.03 0.65 8.14 -51.93 -0.42 0.22 16 24 H 0.03 0.64 6.06 -51.93 -0.31 0.33 16 25 H 0.05 1.22 7.80 -51.93 -0.40 0.82 16 26 H 0.11 2.91 5.95 -51.93 -0.31 2.60 16 27 H 0.04 1.01 8.14 -51.93 -0.42 0.59 16 28 H 0.27 7.03 8.31 -40.82 -0.34 6.70 16 29 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 30 H 0.07 1.01 8.02 -51.93 -0.42 0.60 16 31 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 33 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.11 1.60 8.14 -51.93 -0.42 1.17 16 LS Contribution 290.99 15.07 4.39 4.39 Total: -1.00 -29.83 290.99 -6.76 -36.58 By element: Atomic # 1 Polarization: 6.40 SS G_CDS: -5.59 Total: 0.81 kcal Atomic # 6 Polarization: -7.25 SS G_CDS: -0.15 Total: -7.41 kcal Atomic # 7 Polarization: -25.00 SS G_CDS: 0.63 Total: -24.38 kcal Atomic # 8 Polarization: -24.94 SS G_CDS: -1.01 Total: -25.95 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.96 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -29.83 -6.76 -36.58 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000187896286.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -119.454 kcal (2) G-P(sol) polarization free energy of solvation -29.826 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.280 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.757 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.583 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.037 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds