Wall clock time and date at job start Mon Mar 30 2020 04:27:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52996 * 109.46980 * 2 1 4 4 H 1.08994 * 109.47506 * 304.99917 * 3 2 1 5 5 C 1.50703 * 109.47068 * 185.00107 * 3 2 1 6 6 H 1.08007 * 119.99791 * 239.99897 * 5 3 2 7 7 C 1.37869 * 120.00256 * 59.99979 * 5 3 2 8 8 N 1.31523 * 119.99793 * 0.02562 * 7 5 3 9 9 Si 1.86796 * 120.00230 * 179.97438 * 7 5 3 10 10 H 1.48505 * 109.47127 * 60.00316 * 9 7 5 11 11 H 1.48503 * 109.47524 * 179.97438 * 9 7 5 12 12 H 1.48500 * 109.47529 * 300.00319 * 9 7 5 13 13 O 1.45198 * 109.47187 * 65.00104 * 3 2 1 14 14 C 1.34230 * 117.00508 * 270.00180 * 13 3 2 15 15 O 1.20834 * 119.99140 * 359.97438 * 14 13 3 16 16 C 1.50690 * 120.00567 * 179.97438 * 14 13 3 17 17 H 1.08997 * 110.42029 * 57.30744 * 16 14 13 18 18 C 1.54479 * 110.37251 * 294.99993 * 16 14 13 19 19 C 1.54517 * 104.06037 * 217.18912 * 18 16 14 20 20 C 1.54481 * 104.06349 * 0.02562 * 19 18 16 21 21 H 1.09001 * 110.36427 * 265.14751 * 20 19 18 22 22 C 1.52999 * 110.37144 * 142.92305 * 20 19 18 23 23 O 1.44422 * 104.80535 * 23.97783 * 20 19 18 24 24 H 1.08996 * 109.47138 * 60.00278 * 1 2 3 25 25 H 1.08999 * 109.46803 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.47145 * 299.99468 * 1 2 3 27 27 H 1.09000 * 109.47202 * 239.99982 * 2 1 3 28 28 H 1.09005 * 109.47447 * 120.00216 * 2 1 3 29 29 H 0.96998 * 119.99966 * 179.97438 * 8 7 5 30 30 H 1.08991 * 110.51153 * 98.54498 * 18 16 14 31 31 H 1.08995 * 110.50884 * 335.83281 * 18 16 14 32 32 H 1.08996 * 110.50794 * 118.64514 * 19 18 16 33 33 H 1.08995 * 110.50736 * 241.21139 * 19 18 16 34 34 H 1.08998 * 109.47085 * 59.99893 * 22 20 19 35 35 H 1.09000 * 109.46714 * 179.97438 * 22 20 19 36 36 H 1.09000 * 109.47071 * 299.99311 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5419 1.4443 -0.1239 6 1 4.1472 1.8889 0.6523 7 6 4.1433 0.8785 -1.2279 8 7 3.4061 0.3375 -2.1733 9 14 6.0049 0.8814 -1.3818 10 1 6.5975 0.1473 -0.2349 11 1 6.3979 0.2168 -2.6503 12 1 6.4995 2.2816 -1.3821 13 8 1.6559 2.0916 1.2407 14 6 0.4727 2.7254 1.2561 15 8 -0.2189 2.7376 0.2653 16 6 0.0069 3.4215 2.5088 17 1 0.7369 4.1674 2.8231 18 6 -0.2324 2.3943 3.6375 19 6 -1.4759 2.9342 4.3789 20 6 -1.8412 4.2233 3.6099 21 1 -1.3946 5.0924 4.0929 22 6 -3.3607 4.3824 3.5285 23 8 -1.2814 4.0377 2.2916 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5139 0.8900 29 1 3.8292 -0.0603 -2.9503 30 1 0.6259 2.3571 4.3083 31 1 -0.4349 1.4082 3.2198 32 1 -2.2932 2.2148 4.3277 33 1 -1.2330 3.1614 5.4168 34 1 -3.7744 4.4400 4.5352 35 1 -3.6017 5.2955 2.9842 36 1 -3.7884 3.5253 3.0083 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000187920757.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:27:46 Heat of formation + Delta-G solvation = -146.565963 kcal Electronic energy + Delta-G solvation = -18231.931696 eV Core-core repulsion = 15294.917537 eV Total energy + Delta-G solvation = -2937.014159 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 242.135 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.15631 -38.74859 -35.66599 -33.52467 -32.33131 -31.77564 -31.26630 -27.59659 -26.57233 -23.31858 -22.65265 -21.15500 -20.69834 -19.40713 -17.18639 -16.82230 -16.44491 -15.73871 -15.48857 -14.91069 -14.56187 -13.86529 -13.84779 -12.96789 -12.87217 -12.65191 -12.47319 -12.19069 -11.72001 -11.53346 -11.44821 -11.22943 -11.13953 -10.97970 -10.92004 -10.77619 -10.63811 -10.28719 -9.92159 -9.77474 -9.44784 -9.28431 -8.80591 -8.44586 -6.17820 -4.25264 2.97907 3.16118 3.26638 3.30565 3.34980 4.14094 4.33734 4.54347 4.72702 4.84524 5.09198 5.11223 5.14926 5.27250 5.42547 5.57375 5.70637 5.71642 5.84756 5.96428 6.00835 6.05003 6.24321 6.31377 6.46712 6.80262 6.87716 6.98414 7.17963 7.26052 7.62037 7.74219 7.96226 8.15965 8.65621 8.89908 9.39871 10.88934 Molecular weight = 242.14amu Principal moments of inertia in cm(-1) A = 0.043508 B = 0.005644 C = 0.005420 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 643.409980 B = 4959.883326 C = 5164.628029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.135 4.135 3 C 0.222 3.778 4 H 0.047 0.953 5 C -0.522 4.522 6 H 0.068 0.932 7 C 0.063 3.937 8 N -0.888 5.888 9 Si 0.912 3.088 10 H -0.274 1.274 11 H -0.285 1.285 12 H -0.274 1.274 13 O -0.353 6.353 14 C 0.456 3.544 15 O -0.497 6.497 16 C 0.083 3.917 17 H 0.101 0.899 18 C -0.140 4.140 19 C -0.150 4.150 20 C 0.066 3.934 21 H 0.071 0.929 22 C -0.145 4.145 23 O -0.344 6.344 24 H 0.053 0.947 25 H 0.033 0.967 26 H 0.031 0.969 27 H 0.109 0.891 28 H 0.042 0.958 29 H 0.267 0.733 30 H 0.090 0.910 31 H 0.081 0.919 32 H 0.078 0.922 33 H 0.079 0.921 34 H 0.070 0.930 35 H 0.063 0.937 36 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.092 4.272 12.572 15.549 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.173 4.173 3 C 0.170 3.830 4 H 0.065 0.935 5 C -0.560 4.560 6 H 0.086 0.914 7 C -0.139 4.139 8 N -0.525 5.525 9 Si 0.739 3.261 10 H -0.199 1.199 11 H -0.210 1.210 12 H -0.200 1.200 13 O -0.270 6.270 14 C 0.296 3.704 15 O -0.385 6.385 16 C 0.023 3.977 17 H 0.119 0.881 18 C -0.178 4.178 19 C -0.188 4.188 20 C 0.008 3.992 21 H 0.089 0.911 22 C -0.202 4.202 23 O -0.263 6.263 24 H 0.072 0.928 25 H 0.052 0.948 26 H 0.050 0.950 27 H 0.127 0.873 28 H 0.060 0.940 29 H 0.077 0.923 30 H 0.109 0.891 31 H 0.100 0.900 32 H 0.097 0.903 33 H 0.098 0.902 34 H 0.088 0.912 35 H 0.082 0.918 36 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -8.349 4.200 11.843 15.086 hybrid contribution 0.989 -0.123 -0.091 1.001 sum -7.360 4.076 11.752 14.453 Atomic orbital electron populations 1.21867 0.98354 0.98983 1.00830 1.22021 0.92619 0.99310 1.03373 1.20703 0.95005 0.88752 0.78567 0.93495 1.20997 0.89583 1.39118 1.06312 0.91353 1.24884 0.99247 0.94746 0.95030 1.69886 1.35485 1.37737 1.09434 0.86331 0.83835 0.78482 0.77464 1.19946 1.21027 1.19987 1.86449 1.33664 1.62548 1.44342 1.22717 0.81266 0.77595 0.88777 1.90631 1.55238 1.57346 1.35239 1.22368 0.87953 0.95235 0.92102 0.88113 1.22844 0.98858 0.99594 0.96492 1.23033 0.98296 0.97665 0.99781 1.23049 0.95321 0.97068 0.83742 0.91103 1.21786 0.93068 1.03201 1.02185 1.89276 1.30255 1.80623 1.26161 0.92788 0.94791 0.94988 0.87295 0.93955 0.92312 0.89100 0.89979 0.90328 0.90196 0.91154 0.91796 0.91576 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.21 8.57 37.16 0.32 -2.89 16 2 C -0.14 -3.39 5.49 -26.73 -0.15 -3.53 16 3 C 0.22 5.97 2.25 -27.88 -0.06 5.91 16 4 H 0.05 1.41 7.16 -51.93 -0.37 1.04 16 5 C -0.52 -14.64 8.90 -34.44 -0.31 -14.94 16 6 H 0.07 1.88 7.81 -52.48 -0.41 1.47 16 7 C 0.06 1.74 5.29 -17.82 -0.09 1.64 16 8 N -0.89 -25.16 11.30 55.43 0.63 -24.54 16 9 Si 0.91 21.02 29.54 -169.99 -5.02 16.00 16 10 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 11 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 12 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 13 O -0.35 -8.44 9.81 -39.26 -0.39 -8.83 16 14 C 0.46 9.94 5.65 36.00 0.20 10.15 16 15 O -0.50 -12.38 13.70 -25.30 -0.35 -12.73 16 16 C 0.08 1.36 3.82 -27.11 -0.10 1.26 16 17 H 0.10 1.44 8.14 -51.93 -0.42 1.02 16 18 C -0.14 -1.84 6.62 -25.16 -0.17 -2.01 16 19 C -0.15 -1.55 6.63 -25.16 -0.17 -1.72 16 20 C 0.07 0.76 3.92 -25.95 -0.10 0.66 16 21 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 22 C -0.15 -1.42 9.52 37.16 0.35 -1.07 16 23 O -0.34 -5.77 10.61 -54.51 -0.58 -6.35 16 24 H 0.05 1.28 7.80 -51.93 -0.40 0.88 16 25 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 26 H 0.03 0.69 6.06 -51.93 -0.31 0.38 16 27 H 0.11 2.95 5.95 -51.93 -0.31 2.64 16 28 H 0.04 1.02 8.14 -51.93 -0.42 0.59 16 29 H 0.27 7.15 8.31 -40.82 -0.34 6.81 16 30 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 31 H 0.08 1.20 7.86 -51.93 -0.41 0.79 16 32 H 0.08 0.78 7.87 -51.93 -0.41 0.37 16 33 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 34 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 LS Contribution 295.02 15.07 4.45 4.45 Total: -1.00 -31.30 295.02 -7.10 -38.40 By element: Atomic # 1 Polarization: 5.72 SS G_CDS: -5.57 Total: 0.15 kcal Atomic # 6 Polarization: -6.28 SS G_CDS: -0.27 Total: -6.55 kcal Atomic # 7 Polarization: -25.16 SS G_CDS: 0.63 Total: -24.54 kcal Atomic # 8 Polarization: -26.60 SS G_CDS: -1.31 Total: -27.91 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 16.00 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -31.30 -7.10 -38.40 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000187920757.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -108.162 kcal (2) G-P(sol) polarization free energy of solvation -31.305 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.467 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.403 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.566 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds