Wall clock time and date at job start Mon Mar 30 2020 04:27:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52996 * 109.46980 * 2 1 4 4 H 1.08994 * 109.47506 * 304.99917 * 3 2 1 5 5 C 1.50703 * 109.47068 * 185.00107 * 3 2 1 6 6 H 1.08007 * 119.99791 * 239.99897 * 5 3 2 7 7 C 1.37869 * 120.00256 * 59.99979 * 5 3 2 8 8 N 1.31523 * 119.99793 * 0.02562 * 7 5 3 9 9 Si 1.86796 * 120.00230 * 179.97438 * 7 5 3 10 10 H 1.48505 * 109.47127 * 60.00316 * 9 7 5 11 11 H 1.48503 * 109.47524 * 179.97438 * 9 7 5 12 12 H 1.48500 * 109.47529 * 300.00319 * 9 7 5 13 13 O 1.45198 * 109.47187 * 65.00104 * 3 2 1 14 14 C 1.34230 * 117.00508 * 270.00180 * 13 3 2 15 15 O 1.20834 * 119.99140 * 359.97438 * 14 13 3 16 16 C 1.50690 * 120.00567 * 179.97438 * 14 13 3 17 17 H 1.08997 * 110.42029 * 57.30744 * 16 14 13 18 18 C 1.54479 * 110.37251 * 294.99993 * 16 14 13 19 19 C 1.54517 * 104.06037 * 217.18912 * 18 16 14 20 20 C 1.54481 * 104.06349 * 0.02562 * 19 18 16 21 21 H 1.09001 * 110.36427 * 265.14751 * 20 19 18 22 22 C 1.52999 * 110.37144 * 142.92305 * 20 19 18 23 23 O 1.44422 * 104.80535 * 23.97783 * 20 19 18 24 24 H 1.08996 * 109.47138 * 60.00278 * 1 2 3 25 25 H 1.08999 * 109.46803 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.47145 * 299.99468 * 1 2 3 27 27 H 1.09000 * 109.47202 * 239.99982 * 2 1 3 28 28 H 1.09005 * 109.47447 * 120.00216 * 2 1 3 29 29 H 0.96998 * 119.99966 * 179.97438 * 8 7 5 30 30 H 1.08991 * 110.51153 * 98.54498 * 18 16 14 31 31 H 1.08995 * 110.50884 * 335.83281 * 18 16 14 32 32 H 1.08996 * 110.50794 * 118.64514 * 19 18 16 33 33 H 1.08995 * 110.50736 * 241.21139 * 19 18 16 34 34 H 1.08998 * 109.47085 * 59.99893 * 22 20 19 35 35 H 1.09000 * 109.46714 * 179.97438 * 22 20 19 36 36 H 1.09000 * 109.47071 * 299.99311 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5419 1.4443 -0.1239 6 1 4.1472 1.8889 0.6523 7 6 4.1433 0.8785 -1.2279 8 7 3.4061 0.3375 -2.1733 9 14 6.0049 0.8814 -1.3818 10 1 6.5975 0.1473 -0.2349 11 1 6.3979 0.2168 -2.6503 12 1 6.4995 2.2816 -1.3821 13 8 1.6559 2.0916 1.2407 14 6 0.4727 2.7254 1.2561 15 8 -0.2189 2.7376 0.2653 16 6 0.0069 3.4215 2.5088 17 1 0.7369 4.1674 2.8231 18 6 -0.2324 2.3943 3.6375 19 6 -1.4759 2.9342 4.3789 20 6 -1.8412 4.2233 3.6099 21 1 -1.3946 5.0924 4.0929 22 6 -3.3607 4.3824 3.5285 23 8 -1.2814 4.0377 2.2916 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5139 0.8900 29 1 3.8292 -0.0603 -2.9503 30 1 0.6259 2.3571 4.3083 31 1 -0.4349 1.4082 3.2198 32 1 -2.2932 2.2148 4.3277 33 1 -1.2330 3.1614 5.4168 34 1 -3.7744 4.4400 4.5352 35 1 -3.6017 5.2955 2.9842 36 1 -3.7884 3.5253 3.0083 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000187920757.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:27:45 Heat of formation + Delta-G solvation = -165.353916 kcal Electronic energy + Delta-G solvation = -18232.746403 eV Core-core repulsion = 15294.917537 eV Total energy + Delta-G solvation = -2937.828866 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 242.135 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.70577 -40.15288 -37.57519 -35.54711 -33.45500 -33.33261 -32.69027 -29.46066 -27.91240 -25.24694 -23.89211 -22.45578 -22.05628 -21.26959 -18.96278 -18.62206 -17.71682 -17.43430 -16.89881 -16.66535 -16.22978 -15.27055 -14.84638 -14.77756 -14.47271 -14.18663 -13.56104 -13.38685 -13.28818 -13.20678 -13.12459 -12.84103 -12.73424 -12.59425 -12.48803 -12.15368 -11.89033 -11.78195 -11.68279 -11.46212 -11.19618 -10.86616 -10.81627 -10.53188 -8.27805 -6.45513 1.26858 1.41664 1.46012 1.53196 1.69114 2.38298 3.00038 3.02590 3.49967 3.69862 3.85098 3.98994 4.14784 4.24446 4.33072 4.35347 4.45157 4.52818 4.55956 4.76776 4.79382 4.92301 4.96506 4.99737 5.06086 5.17715 5.18355 5.27812 5.33540 5.49685 5.64046 5.79668 5.94887 6.08815 6.59521 6.95835 7.26001 8.78980 Molecular weight = 242.14amu Principal moments of inertia in cm(-1) A = 0.043508 B = 0.005644 C = 0.005420 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 643.409980 B = 4959.883326 C = 5164.628029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.128 4.128 3 C 0.224 3.776 4 H 0.002 0.998 5 C -0.551 4.551 6 H 0.069 0.931 7 C 0.017 3.983 8 N -0.916 5.916 9 Si 0.983 3.017 10 H -0.262 1.262 11 H -0.278 1.278 12 H -0.269 1.269 13 O -0.355 6.355 14 C 0.447 3.553 15 O -0.536 6.536 16 C 0.086 3.914 17 H 0.127 0.873 18 C -0.138 4.138 19 C -0.139 4.139 20 C 0.055 3.945 21 H 0.094 0.906 22 C -0.144 4.144 23 O -0.381 6.381 24 H 0.031 0.969 25 H 0.064 0.936 26 H 0.035 0.965 27 H 0.087 0.913 28 H 0.050 0.950 29 H 0.271 0.729 30 H 0.115 0.885 31 H 0.061 0.939 32 H 0.081 0.919 33 H 0.116 0.884 34 H 0.103 0.897 35 H 0.058 0.942 36 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.691 4.461 14.990 17.429 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.166 4.166 3 C 0.171 3.829 4 H 0.020 0.980 5 C -0.588 4.588 6 H 0.087 0.913 7 C -0.183 4.183 8 N -0.553 5.553 9 Si 0.806 3.194 10 H -0.186 1.186 11 H -0.203 1.203 12 H -0.194 1.194 13 O -0.272 6.272 14 C 0.291 3.709 15 O -0.426 6.426 16 C 0.028 3.972 17 H 0.144 0.856 18 C -0.176 4.176 19 C -0.176 4.176 20 C -0.002 4.002 21 H 0.112 0.888 22 C -0.201 4.201 23 O -0.301 6.301 24 H 0.050 0.950 25 H 0.083 0.917 26 H 0.054 0.946 27 H 0.105 0.895 28 H 0.069 0.931 29 H 0.080 0.920 30 H 0.133 0.867 31 H 0.080 0.920 32 H 0.100 0.900 33 H 0.134 0.866 34 H 0.121 0.879 35 H 0.078 0.922 36 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -7.969 4.396 14.290 16.942 hybrid contribution 0.775 -0.126 -0.847 1.155 sum -7.194 4.269 13.443 15.833 Atomic orbital electron populations 1.21715 0.96522 1.00588 0.99869 1.21860 0.94189 0.97971 1.02569 1.20422 0.94729 0.89315 0.78426 0.98022 1.21298 0.90230 1.40194 1.07112 0.91309 1.25833 1.04398 0.93777 0.94251 1.70019 1.37623 1.37851 1.09837 0.85230 0.77428 0.78782 0.77946 1.18648 1.20290 1.19411 1.86436 1.35147 1.62958 1.42656 1.23966 0.79914 0.76641 0.90380 1.90606 1.55975 1.58740 1.37276 1.22536 0.88719 0.96325 0.89653 0.85590 1.22913 1.01394 0.97577 0.95736 1.23047 0.96818 0.96736 1.01043 1.23459 0.96217 0.98666 0.81835 0.88803 1.21833 0.92019 1.02292 1.03945 1.89256 1.30399 1.80744 1.29693 0.95025 0.91749 0.94641 0.89466 0.93120 0.92002 0.86669 0.91979 0.90009 0.86552 0.87867 0.92242 0.93074 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.92 8.57 71.98 0.62 -5.31 16 2 C -0.13 -6.57 5.49 30.59 0.17 -6.40 16 3 C 0.22 12.51 2.25 29.85 0.07 12.58 16 4 H 0.00 0.13 7.16 -2.39 -0.02 0.11 16 5 C -0.55 -31.51 8.90 25.60 0.23 -31.28 16 6 H 0.07 3.82 7.81 -2.91 -0.02 3.79 16 7 C 0.02 0.95 5.29 84.65 0.45 1.40 16 8 N -0.92 -53.00 11.30 21.45 0.24 -52.76 16 9 Si 0.98 42.91 29.54 68.60 2.03 44.94 16 10 H -0.26 -10.88 7.11 99.48 0.71 -10.17 16 11 H -0.28 -11.72 7.11 99.48 0.71 -11.02 16 12 H -0.27 -11.45 7.11 99.48 0.71 -10.75 16 13 O -0.36 -17.38 9.81 -51.42 -0.50 -17.88 16 14 C 0.45 19.99 5.65 71.23 0.40 20.39 16 15 O -0.54 -27.96 13.70 28.19 0.39 -27.57 16 16 C 0.09 2.76 3.82 30.35 0.12 2.88 16 17 H 0.13 3.37 8.14 -2.39 -0.02 3.35 16 18 C -0.14 -3.34 6.62 31.61 0.21 -3.13 16 19 C -0.14 -2.39 6.63 31.61 0.21 -2.18 16 20 C 0.05 1.13 3.92 31.10 0.12 1.25 16 21 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 22 C -0.14 -2.50 9.52 71.98 0.69 -1.81 16 23 O -0.38 -12.51 10.61 -130.55 -1.38 -13.90 16 24 H 0.03 1.55 7.80 -2.39 -0.02 1.53 16 25 H 0.06 2.50 8.14 -2.39 -0.02 2.48 16 26 H 0.03 1.56 6.06 -2.39 -0.01 1.54 16 27 H 0.09 4.88 5.95 -2.39 -0.01 4.86 16 28 H 0.05 2.46 8.14 -2.38 -0.02 2.44 16 29 H 0.27 14.68 8.31 -92.71 -0.77 13.91 16 30 H 0.11 2.20 8.14 -2.39 -0.02 2.18 16 31 H 0.06 1.74 7.86 -2.39 -0.02 1.72 16 32 H 0.08 1.37 7.87 -2.39 -0.02 1.35 16 33 H 0.12 1.20 8.14 -2.39 -0.02 1.18 16 34 H 0.10 1.10 8.14 -2.39 -0.02 1.08 16 35 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 36 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 Total: -1.00 -70.71 295.02 5.09 -65.62 By element: Atomic # 1 Polarization: 12.10 SS G_CDS: 1.05 Total: 13.16 kcal Atomic # 6 Polarization: -14.88 SS G_CDS: 3.27 Total: -11.60 kcal Atomic # 7 Polarization: -53.00 SS G_CDS: 0.24 Total: -52.76 kcal Atomic # 8 Polarization: -57.85 SS G_CDS: -1.50 Total: -59.35 kcal Atomic # 14 Polarization: 42.91 SS G_CDS: 2.03 Total: 44.94 kcal Total: -70.71 5.09 -65.62 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000187920757.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.731 kcal (2) G-P(sol) polarization free energy of solvation -70.711 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -170.442 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.623 kcal (6) G-S(sol) free energy of system = (1) + (5) -165.354 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds