Wall clock time and date at job start Mon Mar 30 2020 04:27:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53006 * 109.47054 * 2 1 4 4 H 1.09001 * 109.47002 * 304.99688 * 3 2 1 5 5 C 1.50698 * 109.47184 * 185.00283 * 3 2 1 6 6 H 1.08003 * 120.00057 * 240.00090 * 5 3 2 7 7 C 1.37876 * 120.00356 * 59.99290 * 5 3 2 8 8 N 1.31519 * 119.99989 * 0.02562 * 7 5 3 9 9 Si 1.86798 * 120.00260 * 180.02562 * 7 5 3 10 10 H 1.48498 * 109.46997 * 90.00238 * 9 7 5 11 11 H 1.48501 * 109.47418 * 210.00367 * 9 7 5 12 12 H 1.48507 * 109.47103 * 330.00231 * 9 7 5 13 13 O 1.45194 * 109.47359 * 64.99700 * 3 2 1 14 14 C 1.34227 * 117.00386 * 270.00711 * 13 3 2 15 15 O 1.20826 * 119.99728 * 359.97438 * 14 13 3 16 16 C 1.50699 * 120.00402 * 180.02562 * 14 13 3 17 17 C 1.52994 * 109.47389 * 179.97438 * 16 14 13 18 18 H 1.08999 * 109.82431 * 305.70178 * 17 16 14 19 19 C 1.54379 * 109.83450 * 184.81243 * 17 16 14 20 20 C 1.55448 * 102.18765 * 219.18683 * 19 17 16 21 21 C 1.54940 * 100.98998 * 34.03821 * 20 19 17 22 22 O 1.43245 * 109.82923 * 66.58533 * 17 16 14 23 23 H 1.08995 * 109.47070 * 60.00530 * 1 2 3 24 24 H 1.09002 * 109.47069 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.47018 * 300.00144 * 1 2 3 26 26 H 1.08997 * 109.47394 * 239.99542 * 2 1 3 27 27 H 1.09004 * 109.47644 * 119.99613 * 2 1 3 28 28 H 0.96996 * 119.99885 * 179.97438 * 8 7 5 29 29 H 1.09002 * 109.46688 * 299.99694 * 16 14 13 30 30 H 1.09002 * 109.46973 * 59.99398 * 16 14 13 31 31 H 1.09005 * 110.84636 * 337.31967 * 19 17 16 32 32 H 1.08998 * 110.84962 * 100.94078 * 19 17 16 33 33 H 1.09001 * 111.05672 * 276.12044 * 20 19 17 34 34 H 1.09003 * 111.18405 * 152.00965 * 20 19 17 35 35 H 1.09010 * 110.31037 * 204.69103 * 21 20 19 36 36 H 1.08999 * 110.39698 * 82.56704 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9816 -0.8419 5 6 3.5419 1.4444 -0.1239 6 1 4.1472 1.8890 0.6522 7 6 4.1433 0.8784 -1.2280 8 7 3.4062 0.3373 -2.1733 9 14 6.0050 0.8801 -1.3812 10 1 6.5538 -0.3519 -0.7598 11 1 6.3836 0.9214 -2.8165 12 1 6.5576 2.0721 -0.6890 13 8 1.6558 2.0918 1.2406 14 6 0.4727 2.7254 1.2559 15 8 -0.2190 2.7376 0.2652 16 6 0.0073 3.4226 2.5083 17 6 -1.3609 4.0601 2.2588 18 1 -1.3123 4.7095 1.3847 19 6 -1.7912 4.8778 3.4955 20 6 -3.3127 4.5707 3.5788 21 6 -3.3463 3.1056 3.0758 22 8 -2.3425 3.0379 2.0506 23 1 -0.3633 0.5137 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 1.8934 -0.5139 -0.8899 27 1 1.8934 -0.5138 0.8900 28 1 3.8293 -0.0605 -2.9502 29 1 -0.0712 2.6986 3.3193 30 1 0.7244 4.1970 2.7807 31 1 -1.2756 4.5284 4.3901 32 1 -1.6169 5.9420 3.3367 33 1 -3.8812 5.2259 2.9188 34 1 -3.6733 4.6422 4.6050 35 1 -4.3267 2.8702 2.6615 36 1 -3.1048 2.4196 3.8877 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000188077020.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:27:16 Heat of formation + Delta-G solvation = -150.081975 kcal Electronic energy + Delta-G solvation = -18105.349247 eV Core-core repulsion = 15168.182622 eV Total energy + Delta-G solvation = -2937.166625 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 242.135 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.90700 -38.87904 -35.64476 -33.41450 -32.35518 -31.67279 -31.14338 -27.50822 -26.55178 -23.22558 -22.15362 -21.50734 -20.28191 -19.21677 -17.12582 -16.74823 -16.53100 -15.81977 -15.28591 -15.15645 -14.51355 -14.11391 -13.56818 -13.34811 -12.77999 -12.60566 -12.31541 -11.82244 -11.63166 -11.40100 -11.33582 -11.19169 -11.13321 -11.03259 -10.93882 -10.88660 -10.54320 -10.22329 -9.69325 -9.47132 -9.38987 -9.23425 -8.71466 -8.38990 -6.13062 -4.20028 3.20514 3.27329 3.32612 3.36396 3.70267 3.95684 4.36219 4.38305 4.68739 4.81041 5.08296 5.16076 5.18684 5.33398 5.51165 5.56496 5.57823 5.64546 5.77154 5.88984 6.04360 6.17206 6.35084 6.43120 6.59129 6.98802 7.09274 7.15220 7.28712 7.39109 7.68540 7.82683 8.06401 8.24703 8.75021 9.00885 9.45204 10.93660 Molecular weight = 242.14amu Principal moments of inertia in cm(-1) A = 0.047914 B = 0.005363 C = 0.005013 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 584.234891 B = 5220.005014 C = 5583.653047 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.135 4.135 3 C 0.221 3.779 4 H 0.046 0.954 5 C -0.520 4.520 6 H 0.067 0.933 7 C 0.062 3.938 8 N -0.888 5.888 9 Si 0.910 3.090 10 H -0.278 1.278 11 H -0.284 1.284 12 H -0.272 1.272 13 O -0.361 6.361 14 C 0.451 3.549 15 O -0.506 6.506 16 C -0.129 4.129 17 C 0.094 3.906 18 H 0.089 0.911 19 C -0.151 4.151 20 C -0.156 4.156 21 C 0.045 3.955 22 O -0.359 6.359 23 H 0.052 0.948 24 H 0.030 0.970 25 H 0.035 0.965 26 H 0.107 0.893 27 H 0.039 0.961 28 H 0.265 0.735 29 H 0.100 0.900 30 H 0.107 0.893 31 H 0.080 0.920 32 H 0.084 0.916 33 H 0.077 0.923 34 H 0.080 0.920 35 H 0.082 0.918 36 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.955 6.927 11.465 16.689 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.173 4.173 3 C 0.169 3.831 4 H 0.064 0.936 5 C -0.559 4.559 6 H 0.086 0.914 7 C -0.140 4.140 8 N -0.526 5.526 9 Si 0.737 3.263 10 H -0.204 1.204 11 H -0.210 1.210 12 H -0.197 1.197 13 O -0.278 6.278 14 C 0.293 3.707 15 O -0.395 6.395 16 C -0.167 4.167 17 C 0.036 3.964 18 H 0.107 0.893 19 C -0.189 4.189 20 C -0.193 4.193 21 C -0.032 4.032 22 O -0.278 6.278 23 H 0.071 0.929 24 H 0.049 0.951 25 H 0.054 0.946 26 H 0.125 0.875 27 H 0.058 0.942 28 H 0.075 0.925 29 H 0.118 0.882 30 H 0.125 0.875 31 H 0.098 0.902 32 H 0.102 0.898 33 H 0.096 0.904 34 H 0.099 0.901 35 H 0.100 0.900 36 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -10.095 6.655 10.783 16.201 hybrid contribution 0.903 -0.005 -0.011 0.903 sum -9.193 6.650 10.772 15.645 Atomic orbital electron populations 1.21841 0.98131 0.98815 1.01069 1.22006 0.92796 0.99382 1.03114 1.20620 0.94806 0.88803 0.78881 0.93622 1.21063 0.89844 1.38810 1.06138 0.91443 1.24887 0.99136 0.94854 0.95103 1.69903 1.35292 1.37920 1.09464 0.86300 0.84061 0.78621 0.77292 1.20397 1.21006 1.19681 1.86454 1.34547 1.62793 1.44031 1.23068 0.80698 0.77385 0.89561 1.90624 1.54995 1.58065 1.35768 1.21805 0.97385 1.01343 0.96193 1.22543 0.87175 0.88864 0.97826 0.89330 1.23225 0.95931 1.01236 0.98495 1.23281 0.96415 0.97363 1.02267 1.23396 0.92883 0.95578 0.91369 1.88660 1.36468 1.53866 1.48806 0.92900 0.95082 0.94553 0.87519 0.94179 0.92458 0.88196 0.87504 0.90153 0.89757 0.90388 0.90089 0.89961 0.92467 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.31 8.57 37.16 0.32 -2.99 16 2 C -0.14 -3.50 5.49 -26.73 -0.15 -3.65 16 3 C 0.22 6.08 2.25 -27.88 -0.06 6.02 16 4 H 0.05 1.39 7.16 -51.93 -0.37 1.02 16 5 C -0.52 -14.89 8.90 -34.44 -0.31 -15.20 16 6 H 0.07 1.90 7.81 -52.48 -0.41 1.49 16 7 C 0.06 1.74 5.29 -17.82 -0.09 1.64 16 8 N -0.89 -25.60 11.30 55.43 0.63 -24.97 16 9 Si 0.91 21.32 29.54 -169.99 -5.02 16.30 16 10 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 11 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 12 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 13 O -0.36 -8.87 9.81 -39.25 -0.38 -9.25 16 14 C 0.45 9.68 6.31 36.00 0.23 9.91 16 15 O -0.51 -12.22 12.64 -23.54 -0.30 -12.52 16 16 C -0.13 -1.95 5.38 -27.89 -0.15 -2.10 16 17 C 0.09 1.30 3.04 -26.01 -0.08 1.22 16 18 H 0.09 1.32 7.94 -51.93 -0.41 0.91 16 19 C -0.15 -1.41 6.56 -24.71 -0.16 -1.57 16 20 C -0.16 -1.33 7.16 -24.41 -0.17 -1.51 16 21 C 0.04 0.50 7.78 38.18 0.30 0.79 16 22 O -0.36 -5.76 10.37 -47.50 -0.49 -6.25 16 23 H 0.05 1.30 7.80 -51.93 -0.40 0.89 16 24 H 0.03 0.64 8.14 -51.93 -0.42 0.21 16 25 H 0.04 0.83 6.06 -51.93 -0.31 0.52 16 26 H 0.11 2.98 5.95 -51.93 -0.31 2.67 16 27 H 0.04 1.01 8.14 -51.93 -0.42 0.58 16 28 H 0.27 7.20 8.31 -40.82 -0.34 6.87 16 29 H 0.10 1.37 8.14 -51.93 -0.42 0.94 16 30 H 0.11 1.33 8.14 -51.93 -0.42 0.90 16 31 H 0.08 0.65 7.85 -51.93 -0.41 0.25 16 32 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 33 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.08 0.82 8.14 -51.92 -0.42 0.40 16 36 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 LS Contribution 293.84 15.07 4.43 4.43 Total: -1.00 -32.31 293.84 -7.05 -39.35 By element: Atomic # 1 Polarization: 5.90 SS G_CDS: -5.57 Total: 0.33 kcal Atomic # 6 Polarization: -7.09 SS G_CDS: -0.33 Total: -7.42 kcal Atomic # 7 Polarization: -25.60 SS G_CDS: 0.63 Total: -24.97 kcal Atomic # 8 Polarization: -26.85 SS G_CDS: -1.18 Total: -28.02 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -32.31 -7.05 -39.35 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000188077020.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -110.730 kcal (2) G-P(sol) polarization free energy of solvation -32.307 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.045 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.352 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds