Wall clock time and date at job start Mon Mar 30 2020 04:27:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53006 * 109.47054 * 2 1 4 4 H 1.09001 * 109.47002 * 304.99688 * 3 2 1 5 5 C 1.50698 * 109.47184 * 185.00283 * 3 2 1 6 6 H 1.08003 * 120.00057 * 240.00090 * 5 3 2 7 7 C 1.37876 * 120.00356 * 59.99290 * 5 3 2 8 8 N 1.31519 * 119.99989 * 0.02562 * 7 5 3 9 9 Si 1.86798 * 120.00260 * 180.02562 * 7 5 3 10 10 H 1.48498 * 109.46997 * 90.00238 * 9 7 5 11 11 H 1.48501 * 109.47418 * 210.00367 * 9 7 5 12 12 H 1.48507 * 109.47103 * 330.00231 * 9 7 5 13 13 O 1.45194 * 109.47359 * 64.99700 * 3 2 1 14 14 C 1.34227 * 117.00386 * 270.00711 * 13 3 2 15 15 O 1.20826 * 119.99728 * 359.97438 * 14 13 3 16 16 C 1.50699 * 120.00402 * 180.02562 * 14 13 3 17 17 C 1.52994 * 109.47389 * 179.97438 * 16 14 13 18 18 H 1.08999 * 109.82431 * 305.70178 * 17 16 14 19 19 C 1.54379 * 109.83450 * 184.81243 * 17 16 14 20 20 C 1.55448 * 102.18765 * 219.18683 * 19 17 16 21 21 C 1.54940 * 100.98998 * 34.03821 * 20 19 17 22 22 O 1.43245 * 109.82923 * 66.58533 * 17 16 14 23 23 H 1.08995 * 109.47070 * 60.00530 * 1 2 3 24 24 H 1.09002 * 109.47069 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.47018 * 300.00144 * 1 2 3 26 26 H 1.08997 * 109.47394 * 239.99542 * 2 1 3 27 27 H 1.09004 * 109.47644 * 119.99613 * 2 1 3 28 28 H 0.96996 * 119.99885 * 179.97438 * 8 7 5 29 29 H 1.09002 * 109.46688 * 299.99694 * 16 14 13 30 30 H 1.09002 * 109.46973 * 59.99398 * 16 14 13 31 31 H 1.09005 * 110.84636 * 337.31967 * 19 17 16 32 32 H 1.08998 * 110.84962 * 100.94078 * 19 17 16 33 33 H 1.09001 * 111.05672 * 276.12044 * 20 19 17 34 34 H 1.09003 * 111.18405 * 152.00965 * 20 19 17 35 35 H 1.09010 * 110.31037 * 204.69103 * 21 20 19 36 36 H 1.08999 * 110.39698 * 82.56704 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9816 -0.8419 5 6 3.5419 1.4444 -0.1239 6 1 4.1472 1.8890 0.6522 7 6 4.1433 0.8784 -1.2280 8 7 3.4062 0.3373 -2.1733 9 14 6.0050 0.8801 -1.3812 10 1 6.5538 -0.3519 -0.7598 11 1 6.3836 0.9214 -2.8165 12 1 6.5576 2.0721 -0.6890 13 8 1.6558 2.0918 1.2406 14 6 0.4727 2.7254 1.2559 15 8 -0.2190 2.7376 0.2652 16 6 0.0073 3.4226 2.5083 17 6 -1.3609 4.0601 2.2588 18 1 -1.3123 4.7095 1.3847 19 6 -1.7912 4.8778 3.4955 20 6 -3.3127 4.5707 3.5788 21 6 -3.3463 3.1056 3.0758 22 8 -2.3425 3.0379 2.0506 23 1 -0.3633 0.5137 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 1.8934 -0.5139 -0.8899 27 1 1.8934 -0.5138 0.8900 28 1 3.8293 -0.0605 -2.9502 29 1 -0.0712 2.6986 3.3193 30 1 0.7244 4.1970 2.7807 31 1 -1.2756 4.5284 4.3901 32 1 -1.6169 5.9420 3.3367 33 1 -3.8812 5.2259 2.9188 34 1 -3.6733 4.6422 4.6050 35 1 -4.3267 2.8702 2.6615 36 1 -3.1048 2.4196 3.8877 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000188077020.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:27:16 Heat of formation + Delta-G solvation = -170.023331 kcal Electronic energy + Delta-G solvation = -18106.213969 eV Core-core repulsion = 15168.182622 eV Total energy + Delta-G solvation = -2938.031347 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 242.135 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.44238 -40.15736 -37.54582 -35.47518 -33.58047 -33.19694 -32.52118 -29.42106 -27.83314 -25.23570 -23.38785 -22.50228 -21.88815 -20.99679 -18.86549 -18.39664 -18.01598 -17.07488 -16.98668 -16.70254 -16.28082 -15.28777 -14.99344 -14.76990 -14.40599 -13.99451 -13.88856 -13.34519 -13.21466 -13.13538 -12.89238 -12.76730 -12.58020 -12.54764 -12.22950 -12.10399 -12.01302 -11.76732 -11.66814 -11.39855 -11.11809 -10.81045 -10.51506 -10.48389 -8.26681 -6.44159 1.41480 1.43940 1.50772 1.55303 2.11009 2.44410 2.98150 3.02763 3.56886 3.74906 3.98754 4.04241 4.22369 4.29323 4.36673 4.39925 4.48015 4.54499 4.63471 4.75093 4.85539 4.85851 4.94714 5.00665 5.08476 5.08597 5.22806 5.31186 5.40197 5.52654 5.67514 6.00493 6.18089 6.22157 6.62271 7.09163 7.29571 8.80273 Molecular weight = 242.14amu Principal moments of inertia in cm(-1) A = 0.047914 B = 0.005363 C = 0.005013 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 584.234891 B = 5220.005014 C = 5583.653047 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.128 4.128 3 C 0.225 3.775 4 H 0.003 0.997 5 C -0.550 4.550 6 H 0.066 0.934 7 C 0.016 3.984 8 N -0.916 5.916 9 Si 0.983 3.017 10 H -0.267 1.267 11 H -0.278 1.278 12 H -0.265 1.265 13 O -0.370 6.370 14 C 0.440 3.560 15 O -0.539 6.539 16 C -0.119 4.119 17 C 0.088 3.912 18 H 0.066 0.934 19 C -0.140 4.140 20 C -0.146 4.146 21 C 0.032 3.968 22 O -0.403 6.403 23 H 0.031 0.969 24 H 0.059 0.941 25 H 0.036 0.964 26 H 0.085 0.915 27 H 0.045 0.955 28 H 0.270 0.730 29 H 0.120 0.880 30 H 0.139 0.861 31 H 0.100 0.900 32 H 0.103 0.897 33 H 0.078 0.922 34 H 0.109 0.891 35 H 0.086 0.914 36 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.664 7.569 13.585 18.309 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.166 4.166 3 C 0.171 3.829 4 H 0.020 0.980 5 C -0.588 4.588 6 H 0.084 0.916 7 C -0.184 4.184 8 N -0.554 5.554 9 Si 0.806 3.194 10 H -0.192 1.192 11 H -0.203 1.203 12 H -0.189 1.189 13 O -0.287 6.287 14 C 0.284 3.716 15 O -0.429 6.429 16 C -0.156 4.156 17 C 0.030 3.970 18 H 0.084 0.916 19 C -0.177 4.177 20 C -0.183 4.183 21 C -0.044 4.044 22 O -0.323 6.323 23 H 0.050 0.950 24 H 0.078 0.922 25 H 0.055 0.945 26 H 0.103 0.897 27 H 0.063 0.937 28 H 0.079 0.921 29 H 0.138 0.862 30 H 0.157 0.843 31 H 0.118 0.882 32 H 0.121 0.879 33 H 0.097 0.903 34 H 0.128 0.872 35 H 0.104 0.896 36 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -9.829 7.308 12.926 17.807 hybrid contribution 0.718 -0.196 -0.690 1.015 sum -9.112 7.112 12.236 16.832 Atomic orbital electron populations 1.21668 0.96344 1.00274 1.00020 1.21856 0.94295 0.98311 1.02172 1.20307 0.94511 0.89192 0.78867 0.97967 1.21352 0.90515 1.39981 1.06934 0.91553 1.25847 1.04407 0.93833 0.94292 1.70032 1.37515 1.37984 1.09884 0.85182 0.77491 0.79150 0.77568 1.19185 1.20310 1.18897 1.86453 1.36492 1.63414 1.42347 1.24443 0.79183 0.76507 0.91427 1.90607 1.55498 1.59099 1.37695 1.22027 0.98703 1.01969 0.92887 1.22637 0.86294 0.88706 0.99387 0.91551 1.23219 0.96326 1.01476 0.96692 1.23274 0.96025 0.95225 1.03817 1.23662 0.92018 0.97853 0.90839 1.88619 1.37872 1.54784 1.51002 0.94996 0.92232 0.94465 0.89662 0.93652 0.92069 0.86178 0.84339 0.88190 0.87889 0.90285 0.87219 0.89617 0.91482 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.99 8.57 71.98 0.62 -5.37 16 2 C -0.13 -6.82 5.49 30.60 0.17 -6.65 16 3 C 0.22 12.79 2.25 29.85 0.07 12.86 16 4 H 0.00 0.16 7.16 -2.39 -0.02 0.15 16 5 C -0.55 -32.12 8.90 25.60 0.23 -31.89 16 6 H 0.07 3.78 7.81 -2.91 -0.02 3.75 16 7 C 0.02 0.89 5.29 84.65 0.45 1.34 16 8 N -0.92 -53.88 11.30 21.45 0.24 -53.63 16 9 Si 0.98 43.59 29.54 68.60 2.03 45.62 16 10 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16 11 H -0.28 -11.95 7.11 99.48 0.71 -11.24 16 12 H -0.26 -11.34 7.11 99.48 0.71 -10.63 16 13 O -0.37 -18.50 9.81 -51.38 -0.50 -19.01 16 14 C 0.44 19.19 6.31 71.24 0.45 19.64 16 15 O -0.54 -27.12 12.64 26.54 0.34 -26.79 16 16 C -0.12 -3.39 5.38 29.85 0.16 -3.23 16 17 C 0.09 2.32 3.04 31.06 0.09 2.42 16 18 H 0.07 2.00 7.94 -2.39 -0.02 1.98 16 19 C -0.14 -2.14 6.56 31.90 0.21 -1.93 16 20 C -0.15 -2.05 7.16 32.10 0.23 -1.82 16 21 C 0.03 0.66 7.78 72.65 0.57 1.23 16 22 O -0.40 -12.79 10.37 -137.25 -1.42 -14.22 16 23 H 0.03 1.61 7.80 -2.39 -0.02 1.59 16 24 H 0.06 2.44 8.14 -2.39 -0.02 2.42 16 25 H 0.04 1.73 6.06 -2.39 -0.01 1.71 16 26 H 0.09 4.91 5.95 -2.39 -0.01 4.89 16 27 H 0.04 2.30 8.14 -2.39 -0.02 2.29 16 28 H 0.27 14.82 8.31 -92.71 -0.77 14.05 16 29 H 0.12 2.99 8.14 -2.39 -0.02 2.97 16 30 H 0.14 3.07 8.14 -2.39 -0.02 3.05 16 31 H 0.10 1.17 7.85 -2.38 -0.02 1.15 16 32 H 0.10 1.22 8.14 -2.39 -0.02 1.20 16 33 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 34 H 0.11 0.95 8.14 -2.39 -0.02 0.93 16 35 H 0.09 1.63 8.14 -2.38 -0.02 1.62 16 36 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 Total: -1.00 -72.84 293.84 4.96 -67.88 By element: Atomic # 1 Polarization: 12.52 SS G_CDS: 1.05 Total: 13.57 kcal Atomic # 6 Polarization: -16.65 SS G_CDS: 3.24 Total: -13.41 kcal Atomic # 7 Polarization: -53.88 SS G_CDS: 0.24 Total: -53.63 kcal Atomic # 8 Polarization: -58.42 SS G_CDS: -1.59 Total: -60.01 kcal Atomic # 14 Polarization: 43.59 SS G_CDS: 2.03 Total: 45.62 kcal Total: -72.84 4.96 -67.88 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000188077020.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -102.146 kcal (2) G-P(sol) polarization free energy of solvation -72.840 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -174.986 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.963 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.878 kcal (6) G-S(sol) free energy of system = (1) + (5) -170.023 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds