Wall clock time and date at job start Mon Mar 30 2020 04:27:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 109.47241 * 2 1 4 4 H 1.08994 * 109.47269 * 55.00202 * 3 2 1 5 5 C 1.50702 * 109.46842 * 174.99958 * 3 2 1 6 6 H 1.08002 * 120.00299 * 120.00437 * 5 3 2 7 7 C 1.37884 * 119.99942 * 299.71996 * 5 3 2 8 8 N 1.31514 * 119.99698 * 0.28408 * 7 5 3 9 9 Si 1.86794 * 119.99837 * 180.27476 * 7 5 3 10 10 H 1.48504 * 109.47196 * 60.00645 * 9 7 5 11 11 H 1.48504 * 109.46887 * 180.02562 * 9 7 5 12 12 H 1.48502 * 109.47679 * 300.00280 * 9 7 5 13 13 O 1.45202 * 109.47203 * 294.99546 * 3 2 1 14 14 C 1.34237 * 116.99443 * 90.00402 * 13 3 2 15 15 O 1.20822 * 120.00184 * 359.97438 * 14 13 3 16 16 C 1.50697 * 119.99347 * 180.02562 * 14 13 3 17 17 C 1.53006 * 109.46815 * 180.02562 * 16 14 13 18 18 H 1.09001 * 109.87058 * 53.98952 * 17 16 14 19 19 C 1.54094 * 109.87672 * 174.99984 * 17 16 14 20 20 C 1.54812 * 104.19018 * 121.45311 * 19 17 16 21 21 C 1.54995 * 102.09055 * 20.87642 * 20 19 17 22 22 O 1.43740 * 109.87499 * 292.82856 * 17 16 14 23 23 H 1.09003 * 109.47374 * 300.00289 * 1 2 3 24 24 H 1.09003 * 109.46563 * 59.99857 * 1 2 3 25 25 H 1.08991 * 109.47795 * 179.97438 * 1 2 3 26 26 H 1.09003 * 109.46905 * 239.99963 * 2 1 3 27 27 H 1.09003 * 109.46563 * 120.00143 * 2 1 3 28 28 H 0.97005 * 119.99651 * 179.97438 * 8 7 5 29 29 H 1.08999 * 109.47331 * 299.99474 * 16 14 13 30 30 H 1.08993 * 109.47703 * 59.99646 * 16 14 13 31 31 H 1.09004 * 110.48436 * 240.12484 * 19 17 16 32 32 H 1.08999 * 110.49232 * 2.77177 * 19 17 16 33 33 H 1.09002 * 110.90745 * 139.07298 * 20 19 17 34 34 H 1.08997 * 110.90922 * 262.64606 * 20 19 17 35 35 H 1.09005 * 110.62110 * 81.47758 * 21 20 19 36 36 H 1.08996 * 110.62364 * 204.31692 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6055 1.9815 0.8418 5 6 3.5419 1.4441 0.1238 6 1 4.1473 1.8887 -0.6522 7 6 4.1430 0.8833 1.2308 8 7 3.4059 0.3419 2.1758 9 14 6.0043 0.8923 1.3879 10 1 6.4946 2.2940 1.3851 11 1 6.3969 0.2326 2.6592 12 1 6.6013 0.1568 0.2442 13 8 1.6560 2.0916 -1.2408 14 6 0.4728 2.7255 -1.2560 15 8 -0.2191 2.7371 -0.2656 16 6 0.0072 3.4216 -2.5088 17 6 -1.3609 4.0596 -2.2592 18 1 -1.3140 4.7057 -1.3826 19 6 -1.7897 4.8789 -3.4918 20 6 -3.1333 4.2418 -3.9224 21 6 -3.5852 3.5279 -2.6230 22 8 -2.3494 3.0348 -2.0624 23 1 -0.3634 0.5139 0.8900 24 1 -0.3632 0.5139 -0.8900 25 1 -0.3634 -1.0275 -0.0005 26 1 1.8933 -0.5139 -0.8900 27 1 1.8932 -0.5139 0.8900 28 1 3.8288 -0.0530 2.9544 29 1 0.7241 4.1958 -2.7822 30 1 -0.0718 2.6971 -3.3192 31 1 -1.9326 5.9257 -3.2232 32 1 -1.0508 4.7858 -4.2877 33 1 -3.8511 5.0082 -4.2149 34 1 -2.9828 3.5242 -4.7289 35 1 -4.0606 4.2342 -1.9423 36 1 -4.2610 2.7041 -2.8527 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000188077037.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:27:19 Heat of formation + Delta-G solvation = -149.715309 kcal Electronic energy + Delta-G solvation = -18094.106323 eV Core-core repulsion = 15156.955597 eV Total energy + Delta-G solvation = -2937.150725 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 242.135 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.88945 -38.87590 -35.65543 -33.41694 -32.38617 -31.64813 -31.14470 -27.47295 -26.46815 -23.23251 -22.37959 -21.28549 -20.37233 -19.28184 -17.11393 -16.53263 -16.20144 -15.97458 -15.52685 -14.93851 -14.78981 -14.26347 -13.68505 -13.03662 -12.78378 -12.57808 -12.34424 -11.82118 -11.64622 -11.40534 -11.33594 -11.14812 -11.13398 -11.04645 -10.86641 -10.79596 -10.56303 -10.22909 -9.69117 -9.58979 -9.41485 -9.24131 -8.71955 -8.38962 -6.12962 -4.20015 3.19326 3.28990 3.32420 3.34882 3.74336 3.92795 4.37327 4.45150 4.70457 4.85242 5.01848 5.18417 5.21365 5.34574 5.48784 5.56520 5.65805 5.65972 5.80429 5.90396 6.03372 6.11785 6.35191 6.43186 6.58989 6.98269 7.00736 7.09950 7.28609 7.38699 7.68315 7.82499 8.05894 8.24483 8.74413 9.00009 9.45103 10.93722 Molecular weight = 242.14amu Principal moments of inertia in cm(-1) A = 0.047630 B = 0.005354 C = 0.005007 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 587.724971 B = 5228.029498 C = 5590.307356 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.135 4.135 3 C 0.222 3.778 4 H 0.046 0.954 5 C -0.521 4.521 6 H 0.067 0.933 7 C 0.063 3.937 8 N -0.888 5.888 9 Si 0.911 3.089 10 H -0.275 1.275 11 H -0.285 1.285 12 H -0.274 1.274 13 O -0.361 6.361 14 C 0.450 3.550 15 O -0.506 6.506 16 C -0.117 4.117 17 C 0.090 3.910 18 H 0.077 0.923 19 C -0.153 4.153 20 C -0.155 4.155 21 C 0.043 3.957 22 O -0.356 6.356 23 H 0.052 0.948 24 H 0.036 0.964 25 H 0.030 0.970 26 H 0.040 0.960 27 H 0.107 0.893 28 H 0.266 0.734 29 H 0.109 0.891 30 H 0.103 0.897 31 H 0.077 0.923 32 H 0.081 0.919 33 H 0.077 0.923 34 H 0.076 0.924 35 H 0.058 0.942 36 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.071 7.090 -11.063 16.556 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.173 4.173 3 C 0.169 3.831 4 H 0.064 0.936 5 C -0.559 4.559 6 H 0.085 0.915 7 C -0.140 4.140 8 N -0.526 5.526 9 Si 0.738 3.262 10 H -0.200 1.200 11 H -0.211 1.211 12 H -0.200 1.200 13 O -0.278 6.278 14 C 0.292 3.708 15 O -0.395 6.395 16 C -0.155 4.155 17 C 0.032 3.968 18 H 0.095 0.905 19 C -0.190 4.190 20 C -0.193 4.193 21 C -0.034 4.034 22 O -0.275 6.275 23 H 0.071 0.929 24 H 0.055 0.945 25 H 0.049 0.951 26 H 0.059 0.941 27 H 0.125 0.875 28 H 0.076 0.924 29 H 0.127 0.873 30 H 0.121 0.879 31 H 0.096 0.904 32 H 0.099 0.901 33 H 0.096 0.904 34 H 0.095 0.905 35 H 0.076 0.924 36 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -10.180 6.759 -10.442 16.073 hybrid contribution 0.839 0.111 0.123 0.856 sum -9.341 6.870 -10.319 15.522 Atomic orbital electron populations 1.21843 0.98139 0.98834 1.01059 1.22002 0.92787 0.99367 1.03116 1.20617 0.94796 0.88811 0.78847 0.93636 1.21025 0.89839 1.39061 1.06020 0.91480 1.24887 0.99135 0.94838 0.95096 1.69895 1.35399 1.37909 1.09376 0.86355 0.84030 0.78425 0.77425 1.20046 1.21063 1.19976 1.86460 1.34515 1.62750 1.44038 1.23090 0.80733 0.77390 0.89562 1.90621 1.55004 1.58100 1.35814 1.21586 0.96242 1.01405 0.96281 1.22526 0.87925 0.89218 0.97151 0.90492 1.23030 0.97796 1.00040 0.98164 1.23137 0.96968 1.00346 0.98860 1.23532 0.88424 0.98560 0.92897 1.89063 1.18525 1.39337 1.80572 0.92930 0.94530 0.95066 0.94143 0.87540 0.92400 0.87266 0.87855 0.90413 0.90055 0.90432 0.90499 0.92382 0.89204 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.31 8.57 37.16 0.32 -2.99 16 2 C -0.13 -3.49 5.49 -26.73 -0.15 -3.64 16 3 C 0.22 6.09 2.25 -27.88 -0.06 6.03 16 4 H 0.05 1.38 7.16 -51.93 -0.37 1.01 16 5 C -0.52 -14.90 8.89 -34.44 -0.31 -15.20 16 6 H 0.07 1.88 7.81 -52.49 -0.41 1.47 16 7 C 0.06 1.74 5.30 -17.82 -0.09 1.65 16 8 N -0.89 -25.58 11.30 55.43 0.63 -24.95 16 9 Si 0.91 21.31 29.54 -169.99 -5.02 16.29 16 10 H -0.28 -6.35 7.11 56.52 0.40 -5.94 16 11 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 12 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 13 O -0.36 -8.84 9.81 -39.28 -0.39 -9.22 16 14 C 0.45 9.66 6.32 36.00 0.23 9.89 16 15 O -0.51 -12.22 12.65 -23.34 -0.30 -12.51 16 16 C -0.12 -1.77 5.30 -27.88 -0.15 -1.92 16 17 C 0.09 1.25 2.93 -26.16 -0.08 1.17 16 18 H 0.08 1.15 7.93 -51.93 -0.41 0.74 16 19 C -0.15 -1.45 6.64 -25.20 -0.17 -1.62 16 20 C -0.16 -1.36 7.15 -24.72 -0.18 -1.54 16 21 C 0.04 0.48 7.72 38.21 0.29 0.77 16 22 O -0.36 -5.72 10.58 -46.62 -0.49 -6.21 16 23 H 0.05 1.29 7.80 -51.93 -0.40 0.89 16 24 H 0.04 0.84 6.06 -51.93 -0.31 0.53 16 25 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 26 H 0.04 1.01 8.14 -51.93 -0.42 0.59 16 27 H 0.11 2.97 5.96 -51.93 -0.31 2.66 16 28 H 0.27 7.23 8.31 -40.82 -0.34 6.89 16 29 H 0.11 1.35 8.14 -51.93 -0.42 0.92 16 30 H 0.10 1.43 8.14 -51.93 -0.42 1.00 16 31 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.08 0.67 7.70 -51.93 -0.40 0.27 16 33 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.09 0.88 8.14 -51.93 -0.42 0.45 16 LS Contribution 293.76 15.07 4.43 4.43 Total: -1.00 -32.20 293.76 -7.04 -39.24 By element: Atomic # 1 Polarization: 5.91 SS G_CDS: -5.56 Total: 0.35 kcal Atomic # 6 Polarization: -7.07 SS G_CDS: -0.34 Total: -7.41 kcal Atomic # 7 Polarization: -25.58 SS G_CDS: 0.63 Total: -24.95 kcal Atomic # 8 Polarization: -26.78 SS G_CDS: -1.17 Total: -27.95 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -32.20 -7.04 -39.24 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000188077037.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -110.473 kcal (2) G-P(sol) polarization free energy of solvation -32.201 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.674 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.041 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.242 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.715 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds