Wall clock time and date at job start Mon Mar 30 2020 04:27:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 109.47241 * 2 1 4 4 H 1.08994 * 109.47269 * 55.00202 * 3 2 1 5 5 C 1.50702 * 109.46842 * 174.99958 * 3 2 1 6 6 H 1.08002 * 120.00299 * 120.00437 * 5 3 2 7 7 C 1.37884 * 119.99942 * 299.71996 * 5 3 2 8 8 N 1.31514 * 119.99698 * 0.28408 * 7 5 3 9 9 Si 1.86794 * 119.99837 * 180.27476 * 7 5 3 10 10 H 1.48504 * 109.47196 * 60.00645 * 9 7 5 11 11 H 1.48504 * 109.46887 * 180.02562 * 9 7 5 12 12 H 1.48502 * 109.47679 * 300.00280 * 9 7 5 13 13 O 1.45202 * 109.47203 * 294.99546 * 3 2 1 14 14 C 1.34237 * 116.99443 * 90.00402 * 13 3 2 15 15 O 1.20822 * 120.00184 * 359.97438 * 14 13 3 16 16 C 1.50697 * 119.99347 * 180.02562 * 14 13 3 17 17 C 1.53006 * 109.46815 * 180.02562 * 16 14 13 18 18 H 1.09001 * 109.87058 * 53.98952 * 17 16 14 19 19 C 1.54094 * 109.87672 * 174.99984 * 17 16 14 20 20 C 1.54812 * 104.19018 * 121.45311 * 19 17 16 21 21 C 1.54995 * 102.09055 * 20.87642 * 20 19 17 22 22 O 1.43740 * 109.87499 * 292.82856 * 17 16 14 23 23 H 1.09003 * 109.47374 * 300.00289 * 1 2 3 24 24 H 1.09003 * 109.46563 * 59.99857 * 1 2 3 25 25 H 1.08991 * 109.47795 * 179.97438 * 1 2 3 26 26 H 1.09003 * 109.46905 * 239.99963 * 2 1 3 27 27 H 1.09003 * 109.46563 * 120.00143 * 2 1 3 28 28 H 0.97005 * 119.99651 * 179.97438 * 8 7 5 29 29 H 1.08999 * 109.47331 * 299.99474 * 16 14 13 30 30 H 1.08993 * 109.47703 * 59.99646 * 16 14 13 31 31 H 1.09004 * 110.48436 * 240.12484 * 19 17 16 32 32 H 1.08999 * 110.49232 * 2.77177 * 19 17 16 33 33 H 1.09002 * 110.90745 * 139.07298 * 20 19 17 34 34 H 1.08997 * 110.90922 * 262.64606 * 20 19 17 35 35 H 1.09005 * 110.62110 * 81.47758 * 21 20 19 36 36 H 1.08996 * 110.62364 * 204.31692 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6055 1.9815 0.8418 5 6 3.5419 1.4441 0.1238 6 1 4.1473 1.8887 -0.6522 7 6 4.1430 0.8833 1.2308 8 7 3.4059 0.3419 2.1758 9 14 6.0043 0.8923 1.3879 10 1 6.4946 2.2940 1.3851 11 1 6.3969 0.2326 2.6592 12 1 6.6013 0.1568 0.2442 13 8 1.6560 2.0916 -1.2408 14 6 0.4728 2.7255 -1.2560 15 8 -0.2191 2.7371 -0.2656 16 6 0.0072 3.4216 -2.5088 17 6 -1.3609 4.0596 -2.2592 18 1 -1.3140 4.7057 -1.3826 19 6 -1.7897 4.8789 -3.4918 20 6 -3.1333 4.2418 -3.9224 21 6 -3.5852 3.5279 -2.6230 22 8 -2.3494 3.0348 -2.0624 23 1 -0.3634 0.5139 0.8900 24 1 -0.3632 0.5139 -0.8900 25 1 -0.3634 -1.0275 -0.0005 26 1 1.8933 -0.5139 -0.8900 27 1 1.8932 -0.5139 0.8900 28 1 3.8288 -0.0530 2.9544 29 1 0.7241 4.1958 -2.7822 30 1 -0.0718 2.6971 -3.3192 31 1 -1.9326 5.9257 -3.2232 32 1 -1.0508 4.7858 -4.2877 33 1 -3.8511 5.0082 -4.2149 34 1 -2.9828 3.5242 -4.7289 35 1 -4.0606 4.2342 -1.9423 36 1 -4.2610 2.7041 -2.8527 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000188077037.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:27:19 Heat of formation + Delta-G solvation = -169.572451 kcal Electronic energy + Delta-G solvation = -18094.967393 eV Core-core repulsion = 15156.955597 eV Total energy + Delta-G solvation = -2938.011796 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 242.135 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.44060 -40.14078 -37.55411 -35.47422 -33.61355 -33.21101 -32.49560 -29.41126 -27.73125 -25.22482 -23.53124 -22.51018 -21.79265 -21.11106 -18.91924 -18.40907 -17.62034 -17.31602 -16.77084 -16.61163 -16.20080 -15.91977 -14.84302 -14.72330 -14.45363 -14.11780 -13.58914 -13.33713 -13.21749 -13.16661 -12.98651 -12.76790 -12.57208 -12.52789 -12.25020 -12.10990 -11.97708 -11.75792 -11.54695 -11.40281 -11.11856 -10.81106 -10.62822 -10.51152 -8.26334 -6.43857 1.41642 1.45761 1.49712 1.54114 2.10659 2.44748 2.97905 3.02982 3.60973 3.78771 4.00639 4.05663 4.17534 4.28687 4.36826 4.40127 4.48244 4.55871 4.63180 4.73849 4.85500 4.86824 4.94849 5.00125 5.08649 5.14296 5.22901 5.26353 5.39856 5.52541 5.67506 6.00243 6.05743 6.19579 6.62218 7.08360 7.29489 8.80409 Molecular weight = 242.14amu Principal moments of inertia in cm(-1) A = 0.047630 B = 0.005354 C = 0.005007 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 587.724971 B = 5228.029498 C = 5590.307356 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.128 4.128 3 C 0.225 3.775 4 H 0.003 0.997 5 C -0.551 4.551 6 H 0.067 0.933 7 C 0.016 3.984 8 N -0.916 5.916 9 Si 0.983 3.017 10 H -0.268 1.268 11 H -0.278 1.278 12 H -0.263 1.263 13 O -0.369 6.369 14 C 0.439 3.561 15 O -0.539 6.539 16 C -0.107 4.107 17 C 0.084 3.916 18 H 0.056 0.944 19 C -0.143 4.143 20 C -0.146 4.146 21 C 0.031 3.969 22 O -0.399 6.399 23 H 0.031 0.969 24 H 0.036 0.964 25 H 0.059 0.941 26 H 0.045 0.955 27 H 0.085 0.915 28 H 0.270 0.730 29 H 0.142 0.858 30 H 0.123 0.877 31 H 0.094 0.906 32 H 0.101 0.899 33 H 0.103 0.897 34 H 0.083 0.917 35 H 0.061 0.939 36 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.806 7.780 -13.104 18.122 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.166 4.166 3 C 0.172 3.828 4 H 0.020 0.980 5 C -0.589 4.589 6 H 0.085 0.915 7 C -0.184 4.184 8 N -0.554 5.554 9 Si 0.806 3.194 10 H -0.193 1.193 11 H -0.203 1.203 12 H -0.188 1.188 13 O -0.286 6.286 14 C 0.284 3.716 15 O -0.430 6.430 16 C -0.144 4.144 17 C 0.026 3.974 18 H 0.074 0.926 19 C -0.180 4.180 20 C -0.183 4.183 21 C -0.045 4.045 22 O -0.319 6.319 23 H 0.050 0.950 24 H 0.055 0.945 25 H 0.078 0.922 26 H 0.064 0.936 27 H 0.103 0.897 28 H 0.079 0.921 29 H 0.160 0.840 30 H 0.141 0.859 31 H 0.113 0.887 32 H 0.119 0.881 33 H 0.121 0.879 34 H 0.101 0.899 35 H 0.079 0.921 36 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -9.939 7.462 -12.506 17.632 hybrid contribution 0.657 -0.082 0.788 1.029 sum -9.283 7.380 -11.718 16.672 Atomic orbital electron populations 1.21670 0.96361 1.00284 1.00008 1.21854 0.94279 0.98313 1.02171 1.20306 0.94513 0.89191 0.78839 0.97955 1.21326 0.90517 1.40205 1.06829 0.91512 1.25847 1.04401 0.93822 0.94293 1.70027 1.37596 1.37989 1.09780 0.85237 0.77479 0.78821 0.77879 1.19282 1.20253 1.18811 1.86457 1.36446 1.63367 1.42352 1.24449 0.79227 0.76516 0.91407 1.90604 1.55500 1.59128 1.37725 1.21820 0.97589 1.02063 0.92966 1.22625 0.87100 0.88996 0.98667 0.92624 1.23016 0.98569 1.00071 0.96370 1.23126 0.96928 1.00810 0.97442 1.23797 0.87119 0.99348 0.94266 1.89018 1.20522 1.40800 1.81566 0.94989 0.94478 0.92233 0.93634 0.89673 0.92067 0.83995 0.85944 0.88701 0.88081 0.87856 0.89858 0.92077 0.88368 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.00 8.57 71.98 0.62 -5.38 16 2 C -0.13 -6.81 5.49 30.59 0.17 -6.64 16 3 C 0.22 12.78 2.25 29.85 0.07 12.85 16 4 H 0.00 0.17 7.16 -2.39 -0.02 0.15 16 5 C -0.55 -32.12 8.89 25.60 0.23 -31.89 16 6 H 0.07 3.78 7.81 -2.91 -0.02 3.76 16 7 C 0.02 0.90 5.30 84.66 0.45 1.35 16 8 N -0.92 -53.82 11.30 21.45 0.24 -53.58 16 9 Si 0.98 43.52 29.54 68.60 2.03 45.55 16 10 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 11 H -0.28 -11.85 7.11 99.48 0.71 -11.15 16 12 H -0.26 -11.16 7.11 99.48 0.71 -10.46 16 13 O -0.37 -18.43 9.81 -51.48 -0.50 -18.93 16 14 C 0.44 19.15 6.32 71.23 0.45 19.60 16 15 O -0.54 -27.07 12.65 26.36 0.33 -26.74 16 16 C -0.11 -3.08 5.30 29.85 0.16 -2.92 16 17 C 0.08 2.24 2.93 30.97 0.09 2.33 16 18 H 0.06 1.68 7.93 -2.39 -0.02 1.66 16 19 C -0.14 -2.25 6.64 31.58 0.21 -2.04 16 20 C -0.15 -2.07 7.15 31.90 0.23 -1.84 16 21 C 0.03 0.64 7.72 72.66 0.56 1.20 16 22 O -0.40 -12.68 10.58 -138.09 -1.46 -14.14 16 23 H 0.03 1.61 7.80 -2.39 -0.02 1.59 16 24 H 0.04 1.72 6.06 -2.39 -0.01 1.71 16 25 H 0.06 2.45 8.14 -2.39 -0.02 2.43 16 26 H 0.04 2.31 8.14 -2.39 -0.02 2.30 16 27 H 0.09 4.90 5.96 -2.39 -0.01 4.88 16 28 H 0.27 14.85 8.31 -92.70 -0.77 14.08 16 29 H 0.14 3.12 8.14 -2.39 -0.02 3.10 16 30 H 0.12 3.09 8.14 -2.39 -0.02 3.07 16 31 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 32 H 0.10 1.23 7.70 -2.39 -0.02 1.21 16 33 H 0.10 0.97 8.14 -2.39 -0.02 0.95 16 34 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 35 H 0.06 1.20 8.14 -2.38 -0.02 1.18 16 36 H 0.10 1.80 8.14 -2.39 -0.02 1.78 16 Total: -1.00 -72.42 293.76 4.91 -67.51 By element: Atomic # 1 Polarization: 12.67 SS G_CDS: 1.05 Total: 13.72 kcal Atomic # 6 Polarization: -16.61 SS G_CDS: 3.23 Total: -13.38 kcal Atomic # 7 Polarization: -53.82 SS G_CDS: 0.24 Total: -53.58 kcal Atomic # 8 Polarization: -58.18 SS G_CDS: -1.63 Total: -59.82 kcal Atomic # 14 Polarization: 43.52 SS G_CDS: 2.03 Total: 45.55 kcal Total: -72.42 4.91 -67.51 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000188077037.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -102.061 kcal (2) G-P(sol) polarization free energy of solvation -72.424 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -174.485 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.912 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.511 kcal (6) G-S(sol) free energy of system = (1) + (5) -169.572 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds