Wall clock time and date at job start Mon Mar 30 2020 04:27:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.46745 * 2 1 4 4 H 1.09005 * 109.47252 * 304.53562 * 3 2 1 5 5 C 1.50704 * 109.47026 * 184.53849 * 3 2 1 6 6 H 1.07998 * 119.99867 * 245.63052 * 5 3 2 7 7 C 1.37878 * 119.99959 * 65.62927 * 5 3 2 8 8 N 1.31516 * 120.00003 * 195.87328 * 7 5 3 9 9 Si 1.86798 * 120.00116 * 15.87007 * 7 5 3 10 10 H 1.48497 * 109.47072 * 180.02562 * 9 7 5 11 11 H 1.48504 * 109.47179 * 299.99848 * 9 7 5 12 12 H 1.48499 * 109.47200 * 59.99975 * 9 7 5 13 13 O 1.45193 * 109.47270 * 64.53903 * 3 2 1 14 14 C 1.34234 * 117.00116 * 269.99870 * 13 3 2 15 15 O 1.20826 * 119.99801 * 359.97438 * 14 13 3 16 16 C 1.50702 * 120.00182 * 179.97438 * 14 13 3 17 17 C 1.53178 * 109.54268 * 299.55742 * 16 14 13 18 18 C 1.53092 * 109.16349 * 183.15091 * 17 16 14 19 19 O 1.42910 * 109.41366 * 57.60860 * 18 17 16 20 20 C 1.42902 * 114.09743 * 298.84407 * 19 18 17 21 21 C 1.53089 * 109.41591 * 61.15310 * 20 19 18 22 22 H 1.09005 * 109.47075 * 179.97438 * 1 2 3 23 23 H 1.08996 * 109.47613 * 299.99881 * 1 2 3 24 24 H 1.09005 * 109.47568 * 60.00070 * 1 2 3 25 25 H 1.09001 * 109.46997 * 240.00776 * 2 1 3 26 26 H 1.08996 * 109.47180 * 120.00345 * 2 1 3 27 27 H 0.97003 * 119.99350 * 354.87579 * 8 7 5 28 28 H 1.09001 * 109.54508 * 59.82230 * 16 14 13 29 29 H 1.09006 * 109.52129 * 303.05693 * 17 16 14 30 30 H 1.08997 * 109.52546 * 63.24549 * 17 16 14 31 31 H 1.08999 * 109.48044 * 297.62775 * 18 17 16 32 32 H 1.09004 * 109.48040 * 177.58600 * 18 17 16 33 33 H 1.09005 * 109.47894 * 301.17325 * 20 19 18 34 34 H 1.08998 * 109.49120 * 181.14803 * 20 19 18 35 35 H 1.09002 * 109.52022 * 182.48638 * 21 20 19 36 36 H 1.09007 * 109.52046 * 62.30350 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6117 1.9793 -0.8466 5 6 3.5427 1.4441 -0.1124 6 1 4.1451 1.8080 0.7068 7 6 4.1486 0.9809 -1.2611 8 7 5.4304 0.6868 -1.2557 9 14 3.1488 0.7712 -2.8250 10 1 4.0268 0.2627 -3.9093 11 1 2.0495 -0.1977 -2.5836 12 1 2.5751 2.0811 -3.2252 13 8 1.6464 2.0950 1.2359 14 6 0.4631 2.7288 1.2405 15 8 -0.2209 2.7384 0.2446 16 6 -0.0122 3.4283 2.4879 17 6 -0.1430 2.4124 3.6268 18 6 -0.7008 3.1164 4.8666 19 8 -1.9591 3.7141 4.5476 20 6 -1.8904 4.7064 3.5216 21 6 -1.3803 4.0662 2.2279 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3634 0.5138 0.8899 24 1 -0.3634 0.5138 -0.8900 25 1 1.8933 -0.5137 -0.8901 26 1 1.8933 -0.5139 0.8899 27 1 5.9656 0.8653 -0.4666 28 1 0.7034 4.2015 2.7675 29 1 -0.8204 1.6132 3.3261 30 1 0.8369 1.9937 3.8558 31 1 -0.0033 3.8888 5.1907 32 1 -0.8363 2.3894 5.6673 33 1 -1.2085 5.4996 3.8281 34 1 -2.8827 5.1250 3.3534 35 1 -1.2852 4.8303 1.4563 36 1 -2.0827 3.3004 1.8988 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000188086615.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:27:05 Heat of formation + Delta-G solvation = -154.912861 kcal Electronic energy + Delta-G solvation = -18393.518015 eV Core-core repulsion = 15456.141907 eV Total energy + Delta-G solvation = -2937.376108 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 242.135 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.30590 -38.85894 -36.09061 -33.88594 -33.39168 -31.89274 -31.20367 -27.70094 -26.06086 -23.64828 -22.56754 -21.77502 -20.25132 -19.44358 -17.86262 -17.05343 -16.43533 -16.14156 -15.66623 -15.21528 -14.84112 -13.93470 -13.79411 -13.75850 -13.29928 -12.75638 -12.56746 -12.42320 -12.24049 -11.82039 -11.49271 -11.43392 -11.23329 -10.95849 -10.80260 -10.54311 -10.53445 -10.04424 -9.95808 -9.71629 -9.60606 -9.42527 -8.86785 -8.40405 -6.66290 -4.27441 2.81370 3.29308 3.37088 3.42913 3.53756 3.76734 4.33973 4.56943 4.70037 4.85698 4.94865 5.08021 5.08667 5.27966 5.36634 5.53341 5.55408 5.64891 5.75617 5.88331 5.91072 5.96565 6.04413 6.10208 6.19128 6.43945 6.61407 6.76797 6.82012 7.04141 7.16749 7.38033 7.80615 8.21775 8.47770 8.81887 9.40737 10.76514 Molecular weight = 242.14amu Principal moments of inertia in cm(-1) A = 0.040492 B = 0.006231 C = 0.006036 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 691.334119 B = 4492.505960 C = 4637.732209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.148 4.148 3 C 0.200 3.800 4 H 0.037 0.963 5 C -0.606 4.606 6 H 0.068 0.932 7 C 0.039 3.961 8 N -0.894 5.894 9 Si 1.036 2.964 10 H -0.279 1.279 11 H -0.269 1.269 12 H -0.279 1.279 13 O -0.343 6.343 14 C 0.456 3.544 15 O -0.518 6.518 16 C -0.085 4.085 17 C -0.147 4.147 18 C 0.063 3.937 19 O -0.385 6.385 20 C 0.063 3.937 21 C -0.140 4.140 22 H 0.040 0.960 23 H 0.041 0.959 24 H 0.054 0.946 25 H 0.079 0.921 26 H 0.061 0.939 27 H 0.271 0.729 28 H 0.103 0.897 29 H 0.076 0.924 30 H 0.090 0.910 31 H 0.054 0.946 32 H 0.098 0.902 33 H 0.052 0.948 34 H 0.097 0.903 35 H 0.082 0.918 36 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.365 4.995 9.216 16.211 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.186 4.186 3 C 0.146 3.854 4 H 0.055 0.945 5 C -0.644 4.644 6 H 0.086 0.914 7 C -0.167 4.167 8 N -0.527 5.527 9 Si 0.864 3.136 10 H -0.204 1.204 11 H -0.195 1.195 12 H -0.205 1.205 13 O -0.258 6.258 14 C 0.298 3.702 15 O -0.408 6.408 16 C -0.105 4.105 17 C -0.185 4.185 18 C -0.013 4.013 19 O -0.304 6.304 20 C -0.014 4.014 21 C -0.177 4.177 22 H 0.059 0.941 23 H 0.060 0.940 24 H 0.073 0.927 25 H 0.097 0.903 26 H 0.080 0.920 27 H 0.081 0.919 28 H 0.121 0.879 29 H 0.095 0.905 30 H 0.109 0.891 31 H 0.072 0.928 32 H 0.116 0.884 33 H 0.070 0.930 34 H 0.115 0.885 35 H 0.100 0.900 36 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -12.576 4.375 7.417 15.242 hybrid contribution 0.290 0.595 1.287 1.448 sum -12.287 4.970 8.705 15.857 Atomic orbital electron populations 1.21904 0.97439 0.99816 1.01429 1.22437 0.93779 0.99413 1.02967 1.20914 0.96165 0.88067 0.80208 0.94501 1.21943 0.88693 1.49169 1.04600 0.91411 1.25660 0.97389 0.92609 1.01028 1.70869 1.07220 1.40756 1.33888 0.84179 0.75607 0.77799 0.76059 1.20419 1.19491 1.20464 1.86527 1.34203 1.62187 1.42890 1.23288 0.80598 0.76899 0.89373 1.90589 1.56049 1.58673 1.35451 1.21048 0.98380 0.98512 0.92518 1.22176 1.03513 0.98206 0.94577 1.22605 0.85557 0.96847 0.96315 1.87923 1.30648 1.55627 1.56167 1.22609 1.01987 0.90088 0.86719 1.22094 0.95454 1.01749 0.98438 0.94050 0.94022 0.92698 0.90291 0.92026 0.91854 0.87858 0.90528 0.89149 0.92813 0.88428 0.93008 0.88495 0.89986 0.90016 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.96 8.56 37.16 0.32 -2.64 16 2 C -0.15 -3.38 5.32 -26.73 -0.14 -3.52 16 3 C 0.20 5.05 1.84 -27.88 -0.05 5.00 16 4 H 0.04 0.98 5.84 -51.93 -0.30 0.67 16 5 C -0.61 -17.32 9.17 -34.44 -0.32 -17.64 16 6 H 0.07 2.07 8.06 -52.49 -0.42 1.65 16 7 C 0.04 1.13 5.33 -17.82 -0.09 1.03 16 8 N -0.89 -26.93 13.70 55.43 0.76 -26.17 16 9 Si 1.04 25.04 26.27 -169.99 -4.47 20.58 16 10 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 11 H -0.27 -6.00 5.62 56.52 0.32 -5.68 16 12 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 13 O -0.34 -7.83 9.74 -39.27 -0.38 -8.22 16 14 C 0.46 8.95 5.69 36.01 0.21 9.15 16 15 O -0.52 -11.17 13.11 -18.75 -0.25 -11.42 16 16 C -0.09 -1.23 2.72 -91.59 -0.25 -1.48 16 17 C -0.15 -1.86 5.36 -26.59 -0.14 -2.01 16 18 C 0.06 0.66 6.84 37.21 0.25 0.92 16 19 O -0.38 -4.60 10.77 -35.23 -0.38 -4.97 16 20 C 0.06 0.64 6.84 37.20 0.25 0.90 16 21 C -0.14 -1.76 4.73 -26.60 -0.13 -1.89 16 22 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 23 H 0.04 0.81 6.07 -51.93 -0.32 0.49 16 24 H 0.05 1.12 7.77 -51.93 -0.40 0.72 16 25 H 0.08 1.84 4.68 -51.93 -0.24 1.60 16 26 H 0.06 1.38 8.14 -51.93 -0.42 0.96 16 27 H 0.27 8.10 8.73 -40.82 -0.36 7.75 16 28 H 0.10 1.34 8.14 -51.93 -0.42 0.92 16 29 H 0.08 1.03 8.14 -51.93 -0.42 0.60 16 30 H 0.09 1.16 8.14 -51.93 -0.42 0.74 16 31 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.10 0.86 8.14 -51.93 -0.42 0.43 16 33 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 35 H 0.08 1.02 8.14 -51.93 -0.42 0.59 16 36 H 0.08 1.13 8.02 -51.92 -0.42 0.72 16 LS Contribution 286.41 15.07 4.32 4.32 Total: -1.00 -31.44 286.41 -6.06 -37.49 By element: Atomic # 1 Polarization: 6.14 SS G_CDS: -5.57 Total: 0.57 kcal Atomic # 6 Polarization: -12.08 SS G_CDS: -0.09 Total: -12.17 kcal Atomic # 7 Polarization: -26.93 SS G_CDS: 0.76 Total: -26.17 kcal Atomic # 8 Polarization: -23.60 SS G_CDS: -1.01 Total: -24.61 kcal Atomic # 14 Polarization: 25.04 SS G_CDS: -4.47 Total: 20.58 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -31.44 -6.06 -37.49 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000188086615.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -117.421 kcal (2) G-P(sol) polarization free energy of solvation -31.436 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.857 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.492 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.913 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds