Wall clock time and date at job start Mon Mar 30 2020 04:27:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.46745 * 2 1 4 4 H 1.09005 * 109.47252 * 304.53562 * 3 2 1 5 5 C 1.50704 * 109.47026 * 184.53849 * 3 2 1 6 6 H 1.07998 * 119.99867 * 245.63052 * 5 3 2 7 7 C 1.37878 * 119.99959 * 65.62927 * 5 3 2 8 8 N 1.31516 * 120.00003 * 195.87328 * 7 5 3 9 9 Si 1.86798 * 120.00116 * 15.87007 * 7 5 3 10 10 H 1.48497 * 109.47072 * 180.02562 * 9 7 5 11 11 H 1.48504 * 109.47179 * 299.99848 * 9 7 5 12 12 H 1.48499 * 109.47200 * 59.99975 * 9 7 5 13 13 O 1.45193 * 109.47270 * 64.53903 * 3 2 1 14 14 C 1.34234 * 117.00116 * 269.99870 * 13 3 2 15 15 O 1.20826 * 119.99801 * 359.97438 * 14 13 3 16 16 C 1.50702 * 120.00182 * 179.97438 * 14 13 3 17 17 C 1.53178 * 109.54268 * 299.55742 * 16 14 13 18 18 C 1.53092 * 109.16349 * 183.15091 * 17 16 14 19 19 O 1.42910 * 109.41366 * 57.60860 * 18 17 16 20 20 C 1.42902 * 114.09743 * 298.84407 * 19 18 17 21 21 C 1.53089 * 109.41591 * 61.15310 * 20 19 18 22 22 H 1.09005 * 109.47075 * 179.97438 * 1 2 3 23 23 H 1.08996 * 109.47613 * 299.99881 * 1 2 3 24 24 H 1.09005 * 109.47568 * 60.00070 * 1 2 3 25 25 H 1.09001 * 109.46997 * 240.00776 * 2 1 3 26 26 H 1.08996 * 109.47180 * 120.00345 * 2 1 3 27 27 H 0.97003 * 119.99350 * 354.87579 * 8 7 5 28 28 H 1.09001 * 109.54508 * 59.82230 * 16 14 13 29 29 H 1.09006 * 109.52129 * 303.05693 * 17 16 14 30 30 H 1.08997 * 109.52546 * 63.24549 * 17 16 14 31 31 H 1.08999 * 109.48044 * 297.62775 * 18 17 16 32 32 H 1.09004 * 109.48040 * 177.58600 * 18 17 16 33 33 H 1.09005 * 109.47894 * 301.17325 * 20 19 18 34 34 H 1.08998 * 109.49120 * 181.14803 * 20 19 18 35 35 H 1.09002 * 109.52022 * 182.48638 * 21 20 19 36 36 H 1.09007 * 109.52046 * 62.30350 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6117 1.9793 -0.8466 5 6 3.5427 1.4441 -0.1124 6 1 4.1451 1.8080 0.7068 7 6 4.1486 0.9809 -1.2611 8 7 5.4304 0.6868 -1.2557 9 14 3.1488 0.7712 -2.8250 10 1 4.0268 0.2627 -3.9093 11 1 2.0495 -0.1977 -2.5836 12 1 2.5751 2.0811 -3.2252 13 8 1.6464 2.0950 1.2359 14 6 0.4631 2.7288 1.2405 15 8 -0.2209 2.7384 0.2446 16 6 -0.0122 3.4283 2.4879 17 6 -0.1430 2.4124 3.6268 18 6 -0.7008 3.1164 4.8666 19 8 -1.9591 3.7141 4.5476 20 6 -1.8904 4.7064 3.5216 21 6 -1.3803 4.0662 2.2279 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3634 0.5138 0.8899 24 1 -0.3634 0.5138 -0.8900 25 1 1.8933 -0.5137 -0.8901 26 1 1.8933 -0.5139 0.8899 27 1 5.9656 0.8653 -0.4666 28 1 0.7034 4.2015 2.7675 29 1 -0.8204 1.6132 3.3261 30 1 0.8369 1.9937 3.8558 31 1 -0.0033 3.8888 5.1907 32 1 -0.8363 2.3894 5.6673 33 1 -1.2085 5.4996 3.8281 34 1 -2.8827 5.1250 3.3534 35 1 -1.2852 4.8303 1.4563 36 1 -2.0827 3.3004 1.8988 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000188086615.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:27:05 Heat of formation + Delta-G solvation = -175.200151 kcal Electronic energy + Delta-G solvation = -18394.397738 eV Core-core repulsion = 15456.141907 eV Total energy + Delta-G solvation = -2938.255831 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 242.135 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.79575 -39.97963 -37.80858 -35.60610 -34.80968 -33.83984 -32.09841 -29.60914 -27.26031 -24.67319 -24.40506 -23.20197 -21.76318 -20.91996 -19.91999 -18.72830 -17.72036 -17.35335 -16.89679 -16.62532 -15.80516 -15.60988 -15.19078 -15.04076 -14.82209 -14.59207 -14.48712 -13.83564 -13.50029 -13.34149 -13.05869 -12.77316 -12.56146 -12.43922 -12.35901 -11.94164 -11.79254 -11.69742 -11.57167 -11.38693 -11.16839 -10.89141 -10.61792 -10.56017 -8.96183 -6.58810 1.25115 1.36659 1.43183 1.62288 1.93264 2.32314 2.87688 2.95890 3.49826 3.66336 3.72142 3.96206 4.11591 4.14449 4.20077 4.25820 4.32186 4.45831 4.55248 4.58362 4.67822 4.74923 4.80216 4.95562 5.01229 5.02971 5.05788 5.08660 5.18737 5.36177 5.45814 5.81845 5.94090 6.22940 6.36392 6.88913 7.19239 8.45912 Molecular weight = 242.14amu Principal moments of inertia in cm(-1) A = 0.040492 B = 0.006231 C = 0.006036 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 691.334119 B = 4492.505960 C = 4637.732209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.145 4.145 3 C 0.202 3.798 4 H 0.027 0.973 5 C -0.617 4.617 6 H 0.031 0.969 7 C -0.002 4.002 8 N -0.919 5.919 9 Si 1.069 2.931 10 H -0.273 1.273 11 H -0.237 1.237 12 H -0.270 1.270 13 O -0.358 6.358 14 C 0.450 3.550 15 O -0.538 6.538 16 C -0.082 4.082 17 C -0.144 4.144 18 C 0.067 3.933 19 O -0.399 6.399 20 C 0.066 3.934 21 C -0.135 4.135 22 H 0.072 0.928 23 H 0.040 0.960 24 H 0.049 0.951 25 H 0.075 0.925 26 H 0.059 0.941 27 H 0.259 0.741 28 H 0.121 0.879 29 H 0.065 0.935 30 H 0.085 0.915 31 H 0.071 0.929 32 H 0.116 0.884 33 H 0.071 0.929 34 H 0.116 0.884 35 H 0.082 0.918 36 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.489 5.295 9.774 18.262 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.183 4.183 3 C 0.147 3.853 4 H 0.045 0.955 5 C -0.655 4.655 6 H 0.049 0.951 7 C -0.203 4.203 8 N -0.553 5.553 9 Si 0.890 3.110 10 H -0.198 1.198 11 H -0.162 1.162 12 H -0.196 1.196 13 O -0.274 6.274 14 C 0.294 3.706 15 O -0.428 6.428 16 C -0.101 4.101 17 C -0.182 4.182 18 C -0.010 4.010 19 O -0.317 6.317 20 C -0.011 4.011 21 C -0.173 4.173 22 H 0.091 0.909 23 H 0.059 0.941 24 H 0.068 0.932 25 H 0.093 0.907 26 H 0.078 0.922 27 H 0.068 0.932 28 H 0.139 0.861 29 H 0.084 0.916 30 H 0.104 0.896 31 H 0.090 0.910 32 H 0.134 0.866 33 H 0.089 0.911 34 H 0.134 0.866 35 H 0.101 0.899 36 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -14.714 4.681 8.011 17.396 hybrid contribution 0.979 0.571 1.195 1.647 sum -13.735 5.252 9.206 17.349 Atomic orbital electron populations 1.21804 0.94904 1.01769 1.01135 1.22321 0.95961 0.97334 1.02671 1.20647 0.93890 0.89742 0.81010 0.95532 1.22091 0.90789 1.48909 1.03675 0.95097 1.26990 0.97540 0.91755 1.03966 1.70976 1.08198 1.42671 1.33435 0.83788 0.75474 0.79066 0.72717 1.19762 1.16176 1.19561 1.86513 1.36291 1.62940 1.41640 1.24362 0.79163 0.76089 0.90945 1.90568 1.56197 1.59310 1.36741 1.21254 0.99622 0.98856 0.90346 1.22187 1.03248 0.97726 0.95028 1.22698 0.85393 0.97581 0.95286 1.87918 1.31401 1.56062 1.56369 1.22722 1.03520 0.89892 0.84935 1.22104 0.93829 1.01292 1.00072 0.90945 0.94077 0.93227 0.90694 0.92236 0.93204 0.86121 0.91575 0.89614 0.91043 0.86640 0.91075 0.86576 0.89923 0.91594 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.24 8.56 71.98 0.62 -4.62 16 2 C -0.15 -6.47 5.32 30.59 0.16 -6.31 16 3 C 0.20 10.19 1.84 29.85 0.05 10.24 16 4 H 0.03 1.41 5.84 -2.38 -0.01 1.40 16 5 C -0.62 -36.18 9.17 25.60 0.23 -35.94 16 6 H 0.03 1.98 8.06 -2.91 -0.02 1.96 16 7 C 0.00 -0.12 5.33 84.65 0.45 0.33 16 8 N -0.92 -56.58 13.70 21.45 0.29 -56.29 16 9 Si 1.07 49.80 26.27 68.60 1.80 51.61 16 10 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 11 H -0.24 -9.83 5.62 99.48 0.56 -9.27 16 12 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 13 O -0.36 -16.45 9.74 -51.45 -0.50 -16.95 16 14 C 0.45 17.41 5.69 71.24 0.41 17.82 16 15 O -0.54 -22.86 13.11 21.97 0.29 -22.57 16 16 C -0.08 -2.23 2.72 -11.42 -0.03 -2.26 16 17 C -0.14 -3.41 5.36 30.68 0.16 -3.25 16 18 C 0.07 1.20 6.84 72.01 0.49 1.69 16 19 O -0.40 -8.29 10.77 -148.98 -1.60 -9.90 16 20 C 0.07 1.14 6.84 72.01 0.49 1.64 16 21 C -0.14 -3.14 4.73 30.68 0.15 -3.00 16 22 H 0.07 2.27 8.14 -2.38 -0.02 2.26 16 23 H 0.04 1.53 6.07 -2.39 -0.01 1.51 16 24 H 0.05 1.92 7.77 -2.38 -0.02 1.90 16 25 H 0.07 3.37 4.68 -2.39 -0.01 3.36 16 26 H 0.06 2.64 8.14 -2.39 -0.02 2.62 16 27 H 0.26 16.09 8.73 -92.71 -0.81 15.28 16 28 H 0.12 2.88 8.14 -2.39 -0.02 2.87 16 29 H 0.07 1.69 8.14 -2.38 -0.02 1.67 16 30 H 0.09 2.10 8.14 -2.39 -0.02 2.08 16 31 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 32 H 0.12 1.67 8.14 -2.38 -0.02 1.65 16 33 H 0.07 1.00 8.14 -2.38 -0.02 0.98 16 34 H 0.12 1.60 8.14 -2.39 -0.02 1.58 16 35 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 36 H 0.07 1.74 8.02 -2.38 -0.02 1.72 16 Total: -1.00 -68.75 286.41 4.34 -64.42 By element: Atomic # 1 Polarization: 12.48 SS G_CDS: 0.87 Total: 13.35 kcal Atomic # 6 Polarization: -26.85 SS G_CDS: 3.19 Total: -23.67 kcal Atomic # 7 Polarization: -56.58 SS G_CDS: 0.29 Total: -56.29 kcal Atomic # 8 Polarization: -47.60 SS G_CDS: -1.82 Total: -49.41 kcal Atomic # 14 Polarization: 49.80 SS G_CDS: 1.80 Total: 51.61 kcal Total: -68.75 4.34 -64.42 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000188086615.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -110.784 kcal (2) G-P(sol) polarization free energy of solvation -68.754 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -179.537 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.337 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.416 kcal (6) G-S(sol) free energy of system = (1) + (5) -175.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds