Wall clock time and date at job start Mon Mar 30 2020 04:27:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47060 * 2 1 4 4 H 1.08990 * 109.47170 * 54.99895 * 3 2 1 5 5 C 1.50700 * 109.46738 * 175.00110 * 3 2 1 6 6 H 1.08003 * 120.00017 * 120.00403 * 5 3 2 7 7 C 1.37878 * 120.00047 * 299.99605 * 5 3 2 8 8 N 1.31517 * 119.99937 * 180.02562 * 7 5 3 9 9 Si 1.86797 * 119.99834 * 0.02562 * 7 5 3 10 10 H 1.48502 * 109.47119 * 90.00256 * 9 7 5 11 11 H 1.48505 * 109.46943 * 210.00196 * 9 7 5 12 12 H 1.48495 * 109.47297 * 330.00110 * 9 7 5 13 13 O 1.45199 * 109.47181 * 294.99582 * 3 2 1 14 14 C 1.34237 * 116.99956 * 89.99950 * 13 3 2 15 15 O 1.20824 * 119.99646 * 0.02562 * 14 13 3 16 16 C 1.50691 * 120.00092 * 179.97438 * 14 13 3 17 17 H 1.09000 * 109.48061 * 55.02892 * 16 14 13 18 18 C 1.53093 * 109.48615 * 295.00508 * 16 14 13 19 19 C 1.53174 * 109.16757 * 182.40772 * 18 16 14 20 20 C 1.53182 * 109.03541 * 56.98207 * 19 18 16 21 21 C 1.53099 * 109.15832 * 303.01699 * 20 19 18 22 22 O 1.42904 * 109.48045 * 175.05835 * 16 14 13 23 23 H 1.08998 * 109.47533 * 59.99948 * 1 2 3 24 24 H 1.08996 * 109.47853 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.47153 * 300.00319 * 1 2 3 26 26 H 1.09002 * 109.47153 * 239.99681 * 2 1 3 27 27 H 1.09001 * 109.46832 * 119.99872 * 2 1 3 28 28 H 0.97005 * 120.00058 * 179.97438 * 8 7 5 29 29 H 1.09000 * 109.51933 * 302.31790 * 18 16 14 30 30 H 1.09007 * 109.52182 * 62.50000 * 18 16 14 31 31 H 1.08997 * 109.54350 * 176.84330 * 19 18 16 32 32 H 1.08997 * 109.54163 * 297.11482 * 19 18 16 33 33 H 1.08997 * 109.52418 * 62.92139 * 20 19 18 34 34 H 1.08997 * 109.52110 * 183.05164 * 20 19 18 35 35 H 1.09008 * 109.47682 * 177.59093 * 21 20 19 36 36 H 1.08998 * 109.48146 * 297.61723 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8417 5 6 3.5419 1.4442 0.1238 6 1 4.1472 1.8888 -0.6523 7 6 4.1432 0.8783 1.2280 8 7 5.4539 0.8803 1.3362 9 14 3.0963 0.1089 2.5701 10 1 2.8755 -1.3272 2.2634 11 1 3.7936 0.2349 3.8752 12 1 1.7876 0.8074 2.6386 13 8 1.6559 2.0916 -1.2407 14 6 0.4727 2.7254 -1.2561 15 8 -0.2189 2.7377 -0.2654 16 6 0.0075 3.4225 -2.5084 17 1 0.0134 2.7180 -3.3402 18 6 0.9467 4.5902 -2.8218 19 6 0.4333 5.3299 -4.0610 20 6 -1.0046 5.7927 -3.8066 21 6 -1.8684 4.5785 -3.4553 22 8 -1.3184 3.9185 -2.3133 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3635 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 1.8933 -0.5139 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 5.8770 0.4825 2.1132 29 1 0.9726 5.2745 -1.9737 30 1 1.9497 4.2093 -3.0145 31 1 1.0657 6.1959 -4.2567 32 1 0.4541 4.6598 -4.9203 33 1 -1.0181 6.5012 -2.9784 34 1 -1.3967 6.2727 -4.7031 35 1 -2.8834 4.9071 -3.2314 36 1 -1.8873 3.8893 -4.2995 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000188098293.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:27:34 Heat of formation + Delta-G solvation = -162.407048 kcal Electronic energy + Delta-G solvation = -18367.025854 eV Core-core repulsion = 15429.324774 eV Total energy + Delta-G solvation = -2937.701080 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 242.135 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.77541 -40.06619 -37.70457 -35.60798 -34.65238 -33.98016 -32.50050 -29.83217 -27.09436 -24.98867 -24.73004 -23.09379 -21.60234 -21.23232 -19.37980 -18.57639 -17.89285 -17.62223 -16.89558 -16.59033 -16.20828 -15.57473 -15.30632 -15.05457 -14.81569 -14.22837 -14.02497 -13.89293 -13.66177 -13.43407 -13.22162 -13.14187 -12.63770 -12.52735 -12.21837 -12.05132 -11.96280 -11.59042 -11.54625 -11.41265 -11.17873 -11.02608 -10.75983 -10.55080 -8.46261 -6.54664 1.18864 1.21820 1.29644 1.39075 1.50721 2.18008 2.85597 3.01718 3.58993 3.68785 3.84828 3.98416 4.02642 4.06670 4.13856 4.15100 4.28228 4.48754 4.54509 4.61503 4.79921 4.85765 4.90020 4.92082 5.00061 5.03575 5.07969 5.15631 5.29287 5.32307 5.36178 5.60994 6.05689 6.13906 6.49184 6.86384 7.10135 8.69385 Molecular weight = 242.14amu Principal moments of inertia in cm(-1) A = 0.038420 B = 0.006512 C = 0.005885 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 728.608427 B = 4298.607421 C = 4756.773306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.146 4.146 3 C 0.200 3.800 4 H 0.026 0.974 5 C -0.539 4.539 6 H 0.050 0.950 7 C 0.034 3.966 8 N -0.928 5.928 9 Si 0.934 3.066 10 H -0.248 1.248 11 H -0.283 1.283 12 H -0.259 1.259 13 O -0.346 6.346 14 C 0.451 3.549 15 O -0.527 6.527 16 C 0.109 3.891 17 H 0.118 0.882 18 C -0.146 4.146 19 C -0.114 4.114 20 C -0.156 4.156 21 C 0.051 3.949 22 O -0.389 6.389 23 H 0.045 0.955 24 H 0.077 0.923 25 H 0.043 0.957 26 H 0.077 0.923 27 H 0.060 0.940 28 H 0.276 0.724 29 H 0.058 0.942 30 H 0.085 0.915 31 H 0.086 0.914 32 H 0.086 0.914 33 H 0.061 0.939 34 H 0.106 0.894 35 H 0.113 0.887 36 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.606 5.683 -11.705 18.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.184 4.184 3 C 0.146 3.854 4 H 0.044 0.956 5 C -0.576 4.576 6 H 0.068 0.932 7 C -0.166 4.166 8 N -0.566 5.566 9 Si 0.759 3.241 10 H -0.173 1.173 11 H -0.209 1.209 12 H -0.184 1.184 13 O -0.262 6.262 14 C 0.294 3.706 15 O -0.416 6.416 16 C 0.051 3.949 17 H 0.136 0.864 18 C -0.184 4.184 19 C -0.152 4.152 20 C -0.193 4.193 21 C -0.024 4.024 22 O -0.309 6.309 23 H 0.064 0.936 24 H 0.096 0.904 25 H 0.062 0.938 26 H 0.096 0.904 27 H 0.078 0.922 28 H 0.085 0.915 29 H 0.077 0.923 30 H 0.104 0.896 31 H 0.105 0.895 32 H 0.104 0.896 33 H 0.080 0.920 34 H 0.124 0.876 35 H 0.131 0.869 36 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -13.717 5.594 -11.115 18.520 hybrid contribution 0.281 -0.288 0.910 0.995 sum -13.437 5.306 -10.205 17.687 Atomic orbital electron populations 1.21811 0.94673 1.02082 1.01264 1.22276 0.96343 0.97351 1.02397 1.20698 0.94133 0.89800 0.80746 0.95584 1.20947 0.89434 1.39941 1.07327 0.93178 1.25502 0.96039 0.95557 0.99517 1.69948 1.10232 1.45409 1.30971 0.86065 0.79240 0.80432 0.78336 1.17345 1.20923 1.18393 1.86459 1.35538 1.62943 1.41300 1.23924 0.79654 0.76333 0.90660 1.90594 1.55710 1.58395 1.36949 1.21424 0.85289 0.96505 0.91723 0.86441 1.22147 0.99292 0.96319 1.00610 1.21621 0.96641 1.00975 0.95917 1.22235 0.95504 0.98157 1.03404 1.23013 0.97867 0.93717 0.87809 1.87983 1.27170 1.75833 1.39911 0.93599 0.90412 0.93783 0.90401 0.92156 0.91499 0.92288 0.89596 0.89493 0.89555 0.91988 0.87595 0.86909 0.90863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.46 8.57 71.98 0.62 -4.84 16 2 C -0.15 -6.54 5.14 30.59 0.16 -6.38 16 3 C 0.20 10.28 1.84 29.85 0.05 10.34 16 4 H 0.03 1.45 6.21 -2.39 -0.01 1.43 16 5 C -0.54 -31.75 9.48 25.60 0.24 -31.51 16 6 H 0.05 3.23 8.06 -2.91 -0.02 3.21 16 7 C 0.03 1.98 5.45 84.65 0.46 2.44 16 8 N -0.93 -56.73 13.96 21.45 0.30 -56.43 16 9 Si 0.93 44.60 24.41 68.60 1.67 46.28 16 10 H -0.25 -10.88 6.83 99.48 0.68 -10.20 16 11 H -0.28 -13.10 7.11 99.48 0.71 -12.39 16 12 H -0.26 -12.30 6.53 99.48 0.65 -11.65 16 13 O -0.35 -16.03 9.80 -51.48 -0.50 -16.54 16 14 C 0.45 18.63 5.74 71.23 0.41 19.04 16 15 O -0.53 -24.78 13.65 28.39 0.39 -24.39 16 16 C 0.11 3.29 3.17 29.88 0.09 3.38 16 17 H 0.12 2.87 8.14 -2.39 -0.02 2.85 16 18 C -0.15 -3.79 5.40 30.68 0.17 -3.62 16 19 C -0.11 -1.92 6.03 30.71 0.19 -1.74 16 20 C -0.16 -2.36 6.14 30.69 0.19 -2.17 16 21 C 0.05 0.92 6.84 72.02 0.49 1.42 16 22 O -0.39 -11.54 9.94 -129.95 -1.29 -12.83 16 23 H 0.04 1.75 6.06 -2.39 -0.01 1.74 16 24 H 0.08 2.45 8.14 -2.39 -0.02 2.44 16 25 H 0.04 1.80 7.80 -2.39 -0.02 1.78 16 26 H 0.08 3.32 8.14 -2.39 -0.02 3.30 16 27 H 0.06 2.73 3.21 -2.39 -0.01 2.73 16 28 H 0.28 15.56 8.31 -92.70 -0.77 14.79 16 29 H 0.06 1.72 8.14 -2.39 -0.02 1.71 16 30 H 0.09 2.32 8.14 -2.38 -0.02 2.30 16 31 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 32 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 33 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 34 H 0.11 0.99 8.14 -2.39 -0.02 0.97 16 35 H 0.11 1.67 8.14 -2.38 -0.02 1.65 16 36 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 Total: -1.00 -71.05 285.23 4.61 -66.44 By element: Atomic # 1 Polarization: 10.15 SS G_CDS: 0.97 Total: 11.13 kcal Atomic # 6 Polarization: -16.72 SS G_CDS: 3.07 Total: -13.66 kcal Atomic # 7 Polarization: -56.73 SS G_CDS: 0.30 Total: -56.43 kcal Atomic # 8 Polarization: -52.35 SS G_CDS: -1.41 Total: -53.76 kcal Atomic # 14 Polarization: 44.60 SS G_CDS: 1.67 Total: 46.28 kcal Total: -71.05 4.61 -66.44 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000188098293.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.964 kcal (2) G-P(sol) polarization free energy of solvation -71.048 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -167.012 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.605 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.443 kcal (6) G-S(sol) free energy of system = (1) + (5) -162.407 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds