Wall clock time and date at job start Mon Mar 30 2020 03:31:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86802 * 120.00182 * 2 1 4 4 H 1.48499 * 109.47116 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.46984 * 299.99764 * 3 2 1 6 6 H 1.48498 * 109.46902 * 60.00115 * 3 2 1 7 7 C 1.37884 * 119.99959 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00014 * 175.15218 * 7 2 1 9 9 C 1.50703 * 119.99777 * 355.15788 * 7 2 1 10 10 H 1.09000 * 109.46907 * 35.26564 * 9 7 2 11 11 C 1.50696 * 109.47000 * 155.26979 * 9 7 2 12 12 O 1.20825 * 120.00281 * 115.09206 * 11 9 7 13 13 O 1.34227 * 119.99927 * 295.08919 * 11 9 7 14 14 N 1.46900 * 109.46646 * 275.26642 * 9 7 2 15 15 C 1.46901 * 111.00093 * 299.30253 * 14 9 7 16 16 C 1.53240 * 109.33957 * 172.74676 * 15 14 9 17 17 N 1.47084 * 108.52142 * 53.82985 * 16 15 14 18 18 C 1.34783 * 120.88094 * 128.78956 * 17 16 15 19 19 O 1.21274 * 119.99775 * 180.02562 * 18 17 16 20 20 C 1.47074 * 118.23613 * 308.81760 * 17 16 15 21 21 C 1.46895 * 110.99737 * 175.00351 * 14 9 7 22 22 H 0.97002 * 119.99672 * 185.12542 * 1 2 3 23 23 H 0.96707 * 117.00299 * 180.02562 * 13 11 9 24 24 H 1.08997 * 109.49093 * 292.70604 * 15 14 9 25 25 H 1.09000 * 109.49220 * 52.78941 * 15 14 9 26 26 H 1.09000 * 109.62958 * 294.12323 * 16 15 14 27 27 H 1.08998 * 109.62698 * 173.53910 * 16 15 14 28 28 H 1.07996 * 119.99910 * 0.02562 * 18 17 16 29 29 H 1.08999 * 109.62831 * 291.47199 * 20 17 16 30 30 H 1.09005 * 109.62777 * 170.89150 * 20 17 16 31 31 H 1.09001 * 109.49333 * 307.21211 * 21 14 9 32 32 H 1.08995 * 109.49997 * 67.29399 * 21 14 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0817 -1.1958 -0.0796 9 6 1.2550 -2.4969 0.1091 10 1 0.3056 -2.4155 -0.4202 11 6 2.0773 -3.6024 -0.5014 12 8 2.4929 -4.5000 0.1924 13 8 2.3480 -3.5899 -1.8161 14 7 1.0025 -2.7989 1.5243 15 6 2.2627 -2.9324 2.2672 16 6 1.9584 -3.0656 3.7631 17 7 1.0064 -4.1712 3.9496 18 6 1.2513 -5.1521 4.8410 19 8 0.4555 -6.0564 4.9814 20 6 -0.2194 -4.1784 3.1370 21 6 0.1707 -4.0014 1.6657 22 1 -0.4850 -0.8367 0.0751 23 1 2.8788 -4.3205 -2.1620 24 1 2.7950 -3.8194 1.9239 25 1 2.8795 -2.0496 2.0988 26 1 1.5193 -2.1384 4.1315 27 1 2.8788 -3.2794 4.3064 28 1 2.1562 -5.1326 5.4303 29 1 -0.8678 -3.3582 3.4452 30 1 -0.7389 -5.1280 3.2664 31 1 -0.7298 -3.8939 1.0610 32 1 0.7321 -4.8735 1.3308 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000220520186.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:31:26 Heat of formation + Delta-G solvation = -109.625509 kcal Electronic energy + Delta-G solvation = -18425.149705 eV Core-core repulsion = 15386.197060 eV Total energy + Delta-G solvation = -3038.952645 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 242.110 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.11803 -39.14554 -37.19895 -35.36629 -34.48826 -32.49848 -30.76216 -28.71148 -25.70761 -23.91715 -23.20055 -21.88684 -20.51719 -19.24222 -17.69296 -17.12930 -16.96474 -15.90324 -15.49785 -14.80154 -14.74087 -14.48852 -13.98346 -13.82496 -13.47274 -13.37361 -12.84516 -12.53485 -11.88397 -11.66688 -11.20523 -11.06516 -10.96891 -10.68340 -10.64054 -10.27312 -10.21373 -9.82860 -9.66492 -9.02507 -8.60060 -8.40986 -7.39022 -6.61162 -4.39772 2.91499 2.99104 3.33860 3.35634 3.38300 3.50618 3.98870 4.36148 4.60496 4.91610 5.24218 5.43366 5.49064 5.62676 5.79045 5.86243 5.87626 6.08627 6.16447 6.32109 6.44485 6.61011 6.65787 6.80344 7.23896 7.40365 7.61549 7.80488 8.04890 8.15232 8.30976 8.56562 8.72437 9.36779 10.79001 Molecular weight = 242.11amu Principal moments of inertia in cm(-1) A = 0.025318 B = 0.008626 C = 0.007365 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1105.674617 B = 3245.310433 C = 3800.854114 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C 0.045 3.955 3 Si 1.078 2.922 4 H -0.288 1.288 5 H -0.285 1.285 6 H -0.284 1.284 7 C -0.590 4.590 8 H 0.056 0.944 9 C 0.207 3.793 10 H 0.084 0.916 11 C 0.461 3.539 12 O -0.550 6.550 13 O -0.512 6.512 14 N -0.498 5.498 15 C 0.028 3.972 16 C 0.115 3.885 17 N -0.611 5.611 18 C 0.492 3.508 19 O -0.571 6.571 20 C 0.117 3.883 21 C 0.020 3.980 22 H 0.277 0.723 23 H 0.384 0.616 24 H 0.063 0.937 25 H 0.094 0.906 26 H 0.074 0.926 27 H 0.078 0.922 28 H 0.123 0.877 29 H 0.071 0.929 30 H 0.085 0.915 31 H 0.073 0.927 32 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.881 -3.648 3.447 6.345 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.517 5.517 2 C -0.165 4.165 3 Si 0.905 3.095 4 H -0.214 1.214 5 H -0.211 1.211 6 H -0.210 1.210 7 C -0.629 4.629 8 H 0.074 0.926 9 C 0.099 3.901 10 H 0.102 0.898 11 C 0.305 3.695 12 O -0.442 6.442 13 O -0.319 6.319 14 N -0.222 5.222 15 C -0.101 4.101 16 C -0.008 4.008 17 N -0.346 5.346 18 C 0.262 3.738 19 O -0.449 6.449 20 C -0.006 4.006 21 C -0.109 4.109 22 H 0.089 0.911 23 H 0.240 0.760 24 H 0.081 0.919 25 H 0.112 0.888 26 H 0.093 0.907 27 H 0.096 0.904 28 H 0.139 0.861 29 H 0.089 0.911 30 H 0.104 0.896 31 H 0.092 0.908 32 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 2.851 -2.016 3.999 5.309 hybrid contribution 1.117 -2.803 -0.530 3.064 sum 3.968 -4.819 3.468 7.141 Atomic orbital electron populations 1.70691 1.06896 1.31685 1.42426 1.25848 0.96307 1.02421 0.91901 0.83418 0.74418 0.74390 0.77240 1.21405 1.21079 1.21026 1.21419 0.94321 0.89199 1.57918 0.92620 1.19512 0.95789 0.90258 0.84500 0.89827 1.26489 0.77829 0.86099 0.79066 1.90500 1.53412 1.38757 1.61527 1.84776 1.67991 1.51720 1.27446 1.63125 1.15957 1.32257 1.10890 1.22622 0.93089 1.03202 0.91144 1.21903 0.91709 0.89253 0.97921 1.48710 1.22230 1.24887 1.38795 1.22531 0.90347 0.80502 0.80419 1.90654 1.50382 1.35795 1.68036 1.21630 0.86499 1.02344 0.90081 1.22644 0.98428 0.94059 0.95756 0.91122 0.76004 0.91883 0.88756 0.90739 0.90368 0.86138 0.91103 0.89639 0.90833 0.93493 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -23.99 13.63 55.43 0.76 -23.23 16 2 C 0.04 1.14 5.45 -17.82 -0.10 1.05 16 3 Si 1.08 22.94 29.91 -169.99 -5.08 17.86 16 4 H -0.29 -5.86 7.11 56.52 0.40 -5.46 16 5 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 6 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 7 C -0.59 -14.73 7.01 -34.44 -0.24 -14.97 16 8 H 0.06 1.42 7.81 -52.49 -0.41 1.01 16 9 C 0.21 4.75 1.99 -70.02 -0.14 4.61 16 10 H 0.08 2.05 6.60 -51.93 -0.34 1.70 16 11 C 0.46 9.94 6.97 36.00 0.25 10.20 16 12 O -0.55 -12.15 12.45 -18.75 -0.23 -12.38 16 13 O -0.51 -9.82 13.41 -39.25 -0.53 -10.34 16 14 N -0.50 -10.42 4.61 -229.13 -1.06 -11.48 16 15 C 0.03 0.53 4.94 -3.70 -0.02 0.51 16 16 C 0.12 1.75 6.68 -3.60 -0.02 1.73 16 17 N -0.61 -9.87 3.01 -177.55 -0.53 -10.41 16 18 C 0.49 7.58 11.83 54.06 0.64 8.22 16 19 O -0.57 -11.03 16.63 5.56 0.09 -10.93 16 20 C 0.12 2.02 6.60 -3.60 -0.02 1.99 16 21 C 0.02 0.38 5.21 -3.70 -0.02 0.36 16 22 H 0.28 7.49 6.66 -40.82 -0.27 7.22 16 23 H 0.38 5.29 9.10 45.56 0.41 5.71 16 24 H 0.06 1.31 5.35 -51.93 -0.28 1.03 16 25 H 0.09 1.91 6.87 -51.93 -0.36 1.56 16 26 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 27 H 0.08 0.92 7.86 -51.93 -0.41 0.51 16 28 H 0.12 1.33 7.93 -52.49 -0.42 0.91 16 29 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 30 H 0.09 1.47 7.06 -51.93 -0.37 1.11 16 31 H 0.07 1.34 8.05 -51.93 -0.42 0.92 16 32 H 0.05 0.97 6.14 -51.93 -0.32 0.65 16 LS Contribution 267.35 15.07 4.03 4.03 Total: -1.00 -30.97 267.35 -5.04 -36.01 By element: Atomic # 1 Polarization: 10.00 SS G_CDS: -2.81 Total: 7.19 kcal Atomic # 6 Polarization: 13.36 SS G_CDS: 0.33 Total: 13.69 kcal Atomic # 7 Polarization: -44.28 SS G_CDS: -0.83 Total: -45.12 kcal Atomic # 8 Polarization: -32.99 SS G_CDS: -0.67 Total: -33.66 kcal Atomic # 14 Polarization: 22.94 SS G_CDS: -5.08 Total: 17.86 kcal Total LS contribution 4.03 Total: 4.03 kcal Total: -30.97 -5.04 -36.01 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000220520186.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.611 kcal (2) G-P(sol) polarization free energy of solvation -30.972 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.583 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.042 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.014 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.626 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds