Wall clock time and date at job start Mon Mar 30 2020 03:31:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86802 * 120.00182 * 2 1 4 4 H 1.48499 * 109.47116 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.46984 * 299.99764 * 3 2 1 6 6 H 1.48498 * 109.46902 * 60.00115 * 3 2 1 7 7 C 1.37884 * 119.99959 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00014 * 175.15218 * 7 2 1 9 9 C 1.50703 * 119.99777 * 355.15788 * 7 2 1 10 10 H 1.09000 * 109.46907 * 35.26564 * 9 7 2 11 11 C 1.50696 * 109.47000 * 155.26979 * 9 7 2 12 12 O 1.20825 * 120.00281 * 115.09206 * 11 9 7 13 13 O 1.34227 * 119.99927 * 295.08919 * 11 9 7 14 14 N 1.46900 * 109.46646 * 275.26642 * 9 7 2 15 15 C 1.46901 * 111.00093 * 299.30253 * 14 9 7 16 16 C 1.53240 * 109.33957 * 172.74676 * 15 14 9 17 17 N 1.47084 * 108.52142 * 53.82985 * 16 15 14 18 18 C 1.34783 * 120.88094 * 128.78956 * 17 16 15 19 19 O 1.21274 * 119.99775 * 180.02562 * 18 17 16 20 20 C 1.47074 * 118.23613 * 308.81760 * 17 16 15 21 21 C 1.46895 * 110.99737 * 175.00351 * 14 9 7 22 22 H 0.97002 * 119.99672 * 185.12542 * 1 2 3 23 23 H 0.96707 * 117.00299 * 180.02562 * 13 11 9 24 24 H 1.08997 * 109.49093 * 292.70604 * 15 14 9 25 25 H 1.09000 * 109.49220 * 52.78941 * 15 14 9 26 26 H 1.09000 * 109.62958 * 294.12323 * 16 15 14 27 27 H 1.08998 * 109.62698 * 173.53910 * 16 15 14 28 28 H 1.07996 * 119.99910 * 0.02562 * 18 17 16 29 29 H 1.08999 * 109.62831 * 291.47199 * 20 17 16 30 30 H 1.09005 * 109.62777 * 170.89150 * 20 17 16 31 31 H 1.09001 * 109.49333 * 307.21211 * 21 14 9 32 32 H 1.08995 * 109.49997 * 67.29399 * 21 14 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0817 -1.1958 -0.0796 9 6 1.2550 -2.4969 0.1091 10 1 0.3056 -2.4155 -0.4202 11 6 2.0773 -3.6024 -0.5014 12 8 2.4929 -4.5000 0.1924 13 8 2.3480 -3.5899 -1.8161 14 7 1.0025 -2.7989 1.5243 15 6 2.2627 -2.9324 2.2672 16 6 1.9584 -3.0656 3.7631 17 7 1.0064 -4.1712 3.9496 18 6 1.2513 -5.1521 4.8410 19 8 0.4555 -6.0564 4.9814 20 6 -0.2194 -4.1784 3.1370 21 6 0.1707 -4.0014 1.6657 22 1 -0.4850 -0.8367 0.0751 23 1 2.8788 -4.3205 -2.1620 24 1 2.7950 -3.8194 1.9239 25 1 2.8795 -2.0496 2.0988 26 1 1.5193 -2.1384 4.1315 27 1 2.8788 -3.2794 4.3064 28 1 2.1562 -5.1326 5.4303 29 1 -0.8678 -3.3582 3.4452 30 1 -0.7389 -5.1280 3.2664 31 1 -0.7298 -3.8939 1.0610 32 1 0.7321 -4.8735 1.3308 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000220520186.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:31:26 Heat of formation + Delta-G solvation = -133.893368 kcal Electronic energy + Delta-G solvation = -18426.202038 eV Core-core repulsion = 15386.197060 eV Total energy + Delta-G solvation = -3040.004978 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 242.110 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.73813 -40.54669 -38.70570 -36.96333 -36.15192 -34.24211 -32.19608 -30.37620 -27.30390 -25.64209 -24.72197 -23.30908 -22.17398 -20.66040 -19.46196 -18.81450 -18.38396 -17.36432 -17.03980 -16.41129 -16.15704 -16.07338 -15.65583 -15.44525 -14.98737 -14.70745 -14.60448 -14.02878 -13.47069 -13.23681 -12.74804 -12.70929 -12.57573 -12.25521 -12.17096 -11.89778 -11.81329 -11.56489 -10.96826 -10.87495 -10.53403 -9.78568 -9.02088 -8.62295 -6.40804 1.26000 1.63732 1.69228 1.71354 1.85933 2.11862 2.40502 2.60696 2.94650 3.46150 3.79477 4.05449 4.06107 4.30898 4.32557 4.42439 4.52662 4.55930 4.68231 4.73714 4.85852 5.05206 5.16100 5.39890 5.54240 5.71797 5.99712 6.21680 6.36638 6.47487 6.56954 7.09939 7.12556 7.42102 8.78137 Molecular weight = 242.11amu Principal moments of inertia in cm(-1) A = 0.025318 B = 0.008626 C = 0.007365 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1105.674617 B = 3245.310433 C = 3800.854114 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.004 3.996 3 Si 1.119 2.881 4 H -0.273 1.273 5 H -0.282 1.282 6 H -0.279 1.279 7 C -0.592 4.592 8 H 0.048 0.952 9 C 0.205 3.795 10 H 0.061 0.939 11 C 0.463 3.537 12 O -0.555 6.555 13 O -0.513 6.513 14 N -0.507 5.507 15 C 0.029 3.971 16 C 0.124 3.876 17 N -0.616 5.616 18 C 0.494 3.506 19 O -0.612 6.612 20 C 0.123 3.877 21 C 0.028 3.972 22 H 0.266 0.734 23 H 0.410 0.590 24 H 0.049 0.951 25 H 0.080 0.920 26 H 0.076 0.924 27 H 0.124 0.876 28 H 0.180 0.820 29 H 0.073 0.927 30 H 0.084 0.916 31 H 0.072 0.928 32 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.291 -3.516 4.541 7.809 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.200 4.200 3 Si 0.942 3.058 4 H -0.198 1.198 5 H -0.208 1.208 6 H -0.204 1.204 7 C -0.630 4.630 8 H 0.066 0.934 9 C 0.096 3.904 10 H 0.079 0.921 11 C 0.308 3.692 12 O -0.449 6.449 13 O -0.324 6.324 14 N -0.231 5.231 15 C -0.099 4.099 16 C 0.001 3.999 17 N -0.350 5.350 18 C 0.266 3.734 19 O -0.493 6.493 20 C -0.001 4.001 21 C -0.101 4.101 22 H 0.077 0.923 23 H 0.269 0.731 24 H 0.066 0.934 25 H 0.098 0.902 26 H 0.094 0.906 27 H 0.142 0.858 28 H 0.195 0.805 29 H 0.091 0.909 30 H 0.102 0.898 31 H 0.090 0.910 32 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges 4.290 -1.903 5.081 6.917 hybrid contribution 0.716 -2.937 -0.937 3.164 sum 5.006 -4.840 4.145 8.103 Atomic orbital electron populations 1.70797 1.07773 1.31078 1.44887 1.27048 0.96308 1.05492 0.91141 0.82884 0.74205 0.71325 0.77406 1.19806 1.20817 1.20449 1.21542 0.93940 0.90203 1.57317 0.93397 1.19337 0.94791 0.90473 0.85762 0.92092 1.26098 0.77702 0.85697 0.79745 1.90500 1.53616 1.38824 1.61925 1.84692 1.68364 1.53090 1.26214 1.62956 1.17148 1.33238 1.09765 1.22621 0.91870 1.01704 0.93692 1.21934 0.93458 0.89208 0.95282 1.48841 1.21810 1.25519 1.38809 1.23507 0.91131 0.78964 0.79778 1.90648 1.52105 1.37316 1.69183 1.21465 0.87406 1.02270 0.88932 1.22579 0.97762 0.92465 0.97292 0.92308 0.73061 0.93353 0.90178 0.90571 0.85789 0.80473 0.90911 0.89815 0.90967 0.95181 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -50.05 13.63 21.45 0.29 -49.76 16 2 C 0.00 0.19 5.45 84.66 0.46 0.66 16 3 Si 1.12 45.55 29.91 68.60 2.05 47.60 16 4 H -0.27 -10.33 7.11 99.48 0.71 -9.62 16 5 H -0.28 -11.32 7.11 99.48 0.71 -10.61 16 6 H -0.28 -11.05 7.11 99.48 0.71 -10.34 16 7 C -0.59 -29.62 7.01 25.60 0.18 -29.44 16 8 H 0.05 2.43 7.81 -2.91 -0.02 2.41 16 9 C 0.20 9.53 1.99 43.42 0.09 9.61 16 10 H 0.06 3.10 6.60 -2.39 -0.02 3.08 16 11 C 0.46 19.91 6.97 71.23 0.50 20.41 16 12 O -0.56 -24.25 12.45 21.97 0.27 -23.98 16 13 O -0.51 -19.27 13.41 -51.39 -0.69 -19.96 16 14 N -0.51 -21.22 4.61 -878.84 -4.05 -25.27 16 15 C 0.03 1.09 4.94 86.38 0.43 1.51 16 16 C 0.12 3.40 6.68 86.35 0.58 3.97 16 17 N -0.62 -18.42 3.01 -834.04 -2.51 -20.93 16 18 C 0.49 13.64 11.83 129.79 1.54 15.17 16 19 O -0.61 -22.53 16.63 -3.01 -0.05 -22.58 16 20 C 0.12 4.13 6.60 86.35 0.57 4.70 16 21 C 0.03 1.06 5.21 86.39 0.45 1.51 16 22 H 0.27 14.80 6.66 -92.71 -0.62 14.18 16 23 H 0.41 10.62 9.10 -74.05 -0.67 9.95 16 24 H 0.05 1.95 5.35 -2.39 -0.01 1.94 16 25 H 0.08 3.18 6.87 -2.39 -0.02 3.17 16 26 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 27 H 0.12 2.30 7.86 -2.39 -0.02 2.29 16 28 H 0.18 2.93 7.93 -2.91 -0.02 2.91 16 29 H 0.07 2.41 8.14 -2.39 -0.02 2.39 16 30 H 0.08 2.85 7.06 -2.38 -0.02 2.83 16 31 H 0.07 2.71 8.05 -2.39 -0.02 2.69 16 32 H 0.03 1.25 6.14 -2.39 -0.01 1.24 16 Total: -1.00 -66.89 267.35 0.73 -66.16 By element: Atomic # 1 Polarization: 19.97 SS G_CDS: 0.63 Total: 20.60 kcal Atomic # 6 Polarization: 23.33 SS G_CDS: 4.78 Total: 28.11 kcal Atomic # 7 Polarization: -89.69 SS G_CDS: -6.27 Total: -95.95 kcal Atomic # 8 Polarization: -66.04 SS G_CDS: -0.47 Total: -66.51 kcal Atomic # 14 Polarization: 45.55 SS G_CDS: 2.05 Total: 47.60 kcal Total: -66.89 0.73 -66.16 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000220520186.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.738 kcal (2) G-P(sol) polarization free energy of solvation -66.888 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.626 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.156 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.893 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds