Wall clock time and date at job start Mon Mar 30 2020 03:29:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86799 * 119.99798 * 2 1 4 4 H 1.48491 * 109.47119 * 90.00119 * 3 2 1 5 5 H 1.48509 * 109.47050 * 210.00258 * 3 2 1 6 6 H 1.48501 * 109.47221 * 329.99891 * 3 2 1 7 7 C 1.37875 * 120.00394 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00490 * 179.97438 * 7 2 1 9 9 C 1.50709 * 119.99878 * 359.97438 * 7 2 1 10 10 C 1.52998 * 109.47181 * 180.02562 * 9 7 2 11 11 N 1.46894 * 109.46850 * 179.97438 * 10 9 7 12 12 C 1.46899 * 111.00026 * 75.30657 * 11 10 9 13 13 C 1.50255 * 109.98107 * 173.66326 * 12 11 10 14 14 O 1.21283 * 118.62439 * 162.79442 * 13 12 11 15 15 N 1.33711 * 122.75341 * 342.81736 * 13 12 11 16 16 C 1.46014 * 122.92653 * 1.66773 * 15 13 12 17 17 C 1.47198 * 110.99985 * 198.19199 * 11 10 9 18 18 H 1.09000 * 109.59373 * 287.41521 * 17 11 10 19 19 C 1.50696 * 109.59165 * 47.86337 * 17 11 10 20 20 O 1.20825 * 120.00073 * 31.86518 * 19 17 11 21 21 O 1.34229 * 120.00407 * 211.86184 * 19 17 11 22 22 H 0.97004 * 119.99355 * 179.97438 * 1 2 3 23 23 H 1.09001 * 109.46891 * 300.00459 * 9 7 2 24 24 H 1.09002 * 109.46770 * 59.99760 * 9 7 2 25 25 H 1.08997 * 109.47142 * 299.99787 * 10 9 7 26 26 H 1.08999 * 109.46798 * 59.99890 * 10 9 7 27 27 H 1.09005 * 109.38702 * 293.81352 * 12 11 10 28 28 H 1.08999 * 109.38832 * 53.50487 * 12 11 10 29 29 H 0.97004 * 118.54344 * 181.64382 * 15 13 12 30 30 H 1.08997 * 109.37818 * 102.00989 * 16 15 13 31 31 H 1.08994 * 109.37499 * 221.78440 * 16 15 13 32 32 H 0.96698 * 117.00092 * 179.97438 * 21 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 1.4000 5 1 3.5467 1.4402 -0.7001 6 1 1.4466 2.6527 -0.7001 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2512 -2.4992 -0.0005 10 6 2.2454 -3.6621 -0.0005 11 7 1.5109 -4.9342 0.0001 12 6 0.9460 -5.2166 -1.3262 13 6 0.3346 -6.5890 -1.3423 14 8 -0.4431 -6.8682 -2.2300 15 7 0.6117 -7.5152 -0.4186 16 6 1.5052 -7.2686 0.7096 17 6 2.3779 -6.0437 0.4291 18 1 3.0919 -6.2762 -0.3609 19 6 3.1167 -5.6519 1.6828 20 8 2.6003 -4.9052 2.4800 21 8 4.3485 -6.1326 1.9139 22 1 -0.4849 -0.8401 -0.0004 23 1 0.6248 -2.5571 0.8897 24 1 0.6241 -2.5567 -0.8903 25 1 2.8720 -3.6043 -0.8905 26 1 2.8721 -3.6042 0.8894 27 1 0.1800 -4.4766 -1.5582 28 1 1.7364 -5.1638 -2.0749 29 1 0.2007 -8.3900 -0.5015 30 1 0.9134 -7.0929 1.6079 31 1 2.1441 -8.1384 0.8618 32 1 4.7828 -5.8527 2.7313 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000230927753.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:29:43 Heat of formation + Delta-G solvation = -117.239333 kcal Electronic energy + Delta-G solvation = -17866.589856 eV Core-core repulsion = 14827.307051 eV Total energy + Delta-G solvation = -3039.282805 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 242.110 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.02619 -39.73570 -37.32536 -36.05543 -35.10436 -33.25138 -30.70347 -29.62848 -26.37379 -24.93641 -23.55105 -21.73545 -20.78066 -19.25395 -18.39978 -17.60561 -17.05853 -16.65761 -16.41705 -15.39557 -15.26890 -14.77278 -14.25690 -14.04500 -13.71618 -13.40251 -13.10323 -12.76755 -12.46146 -12.21767 -11.93902 -11.48521 -11.38413 -10.81845 -10.53371 -10.27806 -10.11458 -9.83785 -9.82448 -9.28149 -8.58986 -8.35853 -8.29579 -6.35204 -4.04600 2.04375 2.54301 2.67179 3.15506 3.44136 3.47816 3.63283 3.80131 4.37025 4.52286 4.56506 4.75787 5.02172 5.09129 5.26868 5.42590 5.48667 5.59672 5.90794 6.02967 6.36462 6.55071 6.68677 6.83047 6.91320 7.10061 7.43164 7.60561 7.82474 8.10222 8.19647 8.46323 8.88770 9.67720 11.06111 Molecular weight = 242.11amu Principal moments of inertia in cm(-1) A = 0.023796 B = 0.007030 C = 0.005719 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1176.390192 B = 3981.952500 C = 4894.654781 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C 0.017 3.983 3 Si 1.072 2.928 4 H -0.288 1.288 5 H -0.290 1.290 6 H -0.284 1.284 7 C -0.605 4.605 8 H 0.047 0.953 9 C 0.021 3.979 10 C 0.057 3.943 11 N -0.513 5.513 12 C 0.041 3.959 13 C 0.528 3.472 14 O -0.550 6.550 15 N -0.717 5.717 16 C 0.130 3.870 17 C 0.071 3.929 18 H 0.081 0.919 19 C 0.483 3.517 20 O -0.471 6.471 21 O -0.519 6.519 22 H 0.271 0.729 23 H 0.021 0.979 24 H 0.008 0.992 25 H 0.031 0.969 26 H 0.075 0.925 27 H 0.129 0.871 28 H 0.076 0.924 29 H 0.403 0.597 30 H 0.083 0.917 31 H 0.089 0.911 32 H 0.413 0.587 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.709 -15.978 2.228 17.880 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.187 4.187 3 Si 0.900 3.100 4 H -0.214 1.214 5 H -0.216 1.216 6 H -0.209 1.209 7 C -0.644 4.644 8 H 0.065 0.935 9 C -0.016 4.016 10 C -0.069 4.069 11 N -0.241 5.241 12 C -0.089 4.089 13 C 0.315 3.685 14 O -0.427 6.427 15 N -0.371 5.371 16 C 0.005 3.995 17 C -0.039 4.039 18 H 0.099 0.901 19 C 0.322 3.678 20 O -0.354 6.354 21 O -0.332 6.332 22 H 0.081 0.919 23 H 0.039 0.961 24 H 0.026 0.974 25 H 0.050 0.950 26 H 0.093 0.907 27 H 0.146 0.854 28 H 0.094 0.906 29 H 0.239 0.761 30 H 0.101 0.899 31 H 0.107 0.893 32 H 0.272 0.728 Dipole moment (debyes) X Y Z Total from point charges 6.475 -14.119 1.986 15.659 hybrid contribution 1.141 -1.855 0.105 2.180 sum 7.616 -15.974 2.091 17.819 Atomic orbital electron populations 1.70735 1.06853 1.30818 1.46216 1.25819 0.96551 1.02621 0.93743 0.83506 0.74585 0.75122 0.76751 1.21439 1.21574 1.20942 1.21965 0.94143 0.91906 1.56339 0.93489 1.19138 0.94384 0.91277 0.96818 1.22583 0.97097 0.87035 1.00190 1.62738 1.34080 1.01953 1.25348 1.22389 1.01515 0.94331 0.90659 1.20284 0.80895 0.86646 0.80664 1.90765 1.35527 1.80247 1.36175 1.45410 1.48874 1.16220 1.26559 1.21301 0.92354 0.95678 0.90178 1.21504 0.94291 0.94261 0.93864 0.90108 1.22673 0.79626 0.77911 0.87608 1.90838 1.67184 1.31470 1.45920 1.84492 1.30958 1.70005 1.47756 0.91874 0.96113 0.97392 0.95027 0.90693 0.85365 0.90595 0.76074 0.89916 0.89293 0.72759 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.30 13.65 55.43 0.76 -27.54 16 2 C 0.02 0.50 5.46 -17.82 -0.10 0.40 16 3 Si 1.07 25.59 29.90 -169.99 -5.08 20.50 16 4 H -0.29 -6.64 7.11 56.52 0.40 -6.23 16 5 H -0.29 -6.53 7.11 56.52 0.40 -6.12 16 6 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 7 C -0.60 -17.35 9.11 -34.44 -0.31 -17.67 16 8 H 0.05 1.32 7.74 -52.49 -0.41 0.91 16 9 C 0.02 0.55 4.38 -27.88 -0.12 0.43 16 10 C 0.06 1.16 4.50 -3.83 -0.02 1.15 16 11 N -0.51 -8.73 4.36 -229.51 -1.00 -9.73 16 12 C 0.04 0.66 5.34 -5.19 -0.03 0.63 16 13 C 0.53 8.02 7.81 -11.68 -0.09 7.93 16 14 O -0.55 -10.11 17.82 5.55 0.10 -10.01 16 15 N -0.72 -8.18 5.52 -61.06 -0.34 -8.52 16 16 C 0.13 1.31 6.69 -4.31 -0.03 1.28 16 17 C 0.07 0.92 2.50 -68.70 -0.17 0.75 16 18 H 0.08 0.92 8.08 -51.93 -0.42 0.50 16 19 C 0.48 6.52 6.06 36.00 0.22 6.74 16 20 O -0.47 -8.37 15.90 -18.75 -0.30 -8.67 16 21 O -0.52 -5.04 13.42 -39.26 -0.53 -5.57 16 22 H 0.27 8.43 7.22 -40.82 -0.29 8.13 16 23 H 0.02 0.58 8.01 -51.93 -0.42 0.17 16 24 H 0.01 0.21 6.91 -51.93 -0.36 -0.15 16 25 H 0.03 0.62 7.87 -51.93 -0.41 0.22 16 26 H 0.07 1.60 5.25 -51.93 -0.27 1.32 16 27 H 0.13 2.28 7.09 -51.93 -0.37 1.92 16 28 H 0.08 1.10 7.95 -51.93 -0.41 0.69 16 29 H 0.40 3.73 8.84 -40.82 -0.36 3.37 16 30 H 0.08 0.88 8.11 -51.93 -0.42 0.46 16 31 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.41 2.36 9.10 45.56 0.41 2.78 16 LS Contribution 274.07 15.07 4.13 4.13 Total: -1.00 -36.13 274.07 -5.86 -41.99 By element: Atomic # 1 Polarization: 4.73 SS G_CDS: -2.94 Total: 1.79 kcal Atomic # 6 Polarization: 2.28 SS G_CDS: -0.65 Total: 1.63 kcal Atomic # 7 Polarization: -45.21 SS G_CDS: -0.58 Total: -45.79 kcal Atomic # 8 Polarization: -23.52 SS G_CDS: -0.73 Total: -24.25 kcal Atomic # 14 Polarization: 25.59 SS G_CDS: -5.08 Total: 20.50 kcal Total LS contribution 4.13 Total: 4.13 kcal Total: -36.13 -5.86 -41.99 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000230927753.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.249 kcal (2) G-P(sol) polarization free energy of solvation -36.135 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.384 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.855 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.990 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.239 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds