Wall clock time and date at job start Mon Mar 30 2020 03:29:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86799 * 119.99798 * 2 1 4 4 H 1.48491 * 109.47119 * 90.00119 * 3 2 1 5 5 H 1.48509 * 109.47050 * 210.00258 * 3 2 1 6 6 H 1.48501 * 109.47221 * 329.99891 * 3 2 1 7 7 C 1.37875 * 120.00394 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00490 * 179.97438 * 7 2 1 9 9 C 1.50709 * 119.99878 * 359.97438 * 7 2 1 10 10 C 1.52998 * 109.47181 * 180.02562 * 9 7 2 11 11 N 1.46894 * 109.46850 * 179.97438 * 10 9 7 12 12 C 1.46899 * 111.00026 * 75.30657 * 11 10 9 13 13 C 1.50255 * 109.98107 * 173.66326 * 12 11 10 14 14 O 1.21283 * 118.62439 * 162.79442 * 13 12 11 15 15 N 1.33711 * 122.75341 * 342.81736 * 13 12 11 16 16 C 1.46014 * 122.92653 * 1.66773 * 15 13 12 17 17 C 1.47198 * 110.99985 * 198.19199 * 11 10 9 18 18 H 1.09000 * 109.59373 * 287.41521 * 17 11 10 19 19 C 1.50696 * 109.59165 * 47.86337 * 17 11 10 20 20 O 1.20825 * 120.00073 * 31.86518 * 19 17 11 21 21 O 1.34229 * 120.00407 * 211.86184 * 19 17 11 22 22 H 0.97004 * 119.99355 * 179.97438 * 1 2 3 23 23 H 1.09001 * 109.46891 * 300.00459 * 9 7 2 24 24 H 1.09002 * 109.46770 * 59.99760 * 9 7 2 25 25 H 1.08997 * 109.47142 * 299.99787 * 10 9 7 26 26 H 1.08999 * 109.46798 * 59.99890 * 10 9 7 27 27 H 1.09005 * 109.38702 * 293.81352 * 12 11 10 28 28 H 1.08999 * 109.38832 * 53.50487 * 12 11 10 29 29 H 0.97004 * 118.54344 * 181.64382 * 15 13 12 30 30 H 1.08997 * 109.37818 * 102.00989 * 16 15 13 31 31 H 1.08994 * 109.37499 * 221.78440 * 16 15 13 32 32 H 0.96698 * 117.00092 * 179.97438 * 21 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 1.4000 5 1 3.5467 1.4402 -0.7001 6 1 1.4466 2.6527 -0.7001 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2512 -2.4992 -0.0005 10 6 2.2454 -3.6621 -0.0005 11 7 1.5109 -4.9342 0.0001 12 6 0.9460 -5.2166 -1.3262 13 6 0.3346 -6.5890 -1.3423 14 8 -0.4431 -6.8682 -2.2300 15 7 0.6117 -7.5152 -0.4186 16 6 1.5052 -7.2686 0.7096 17 6 2.3779 -6.0437 0.4291 18 1 3.0919 -6.2762 -0.3609 19 6 3.1167 -5.6519 1.6828 20 8 2.6003 -4.9052 2.4800 21 8 4.3485 -6.1326 1.9139 22 1 -0.4849 -0.8401 -0.0004 23 1 0.6248 -2.5571 0.8897 24 1 0.6241 -2.5567 -0.8903 25 1 2.8720 -3.6043 -0.8905 26 1 2.8721 -3.6042 0.8894 27 1 0.1800 -4.4766 -1.5582 28 1 1.7364 -5.1638 -2.0749 29 1 0.2007 -8.3900 -0.5015 30 1 0.9134 -7.0929 1.6079 31 1 2.1441 -8.1384 0.8618 32 1 4.7828 -5.8527 2.7313 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000230927753.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:29:42 Heat of formation + Delta-G solvation = -148.312821 kcal Electronic energy + Delta-G solvation = -17867.937303 eV Core-core repulsion = 14827.307051 eV Total energy + Delta-G solvation = -3040.630252 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 242.110 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -42.15595 -40.86506 -38.58614 -37.09294 -36.49131 -35.18715 -32.02265 -31.27312 -27.92021 -26.05954 -25.38938 -23.07338 -22.37862 -20.33531 -19.42692 -19.08050 -18.50513 -18.10683 -17.56196 -16.56516 -16.45262 -16.03631 -15.70549 -15.51040 -15.40301 -14.62801 -14.47300 -14.32623 -13.89606 -13.76505 -13.19236 -13.08361 -12.74391 -12.52395 -12.16825 -11.91991 -11.80513 -11.54692 -11.18112 -10.73283 -10.54801 -10.28638 -9.68279 -8.70563 -6.41030 0.99222 1.35294 1.51694 1.61643 1.70658 1.78813 2.11456 2.49207 2.62666 3.15778 3.41223 3.41899 3.78296 3.92377 4.10769 4.25380 4.29334 4.38749 4.44801 4.65071 4.81877 5.10639 5.25780 5.53674 5.56390 5.60995 5.80044 5.99034 6.00219 6.16681 6.54542 6.92636 7.00307 7.41918 8.70606 Molecular weight = 242.11amu Principal moments of inertia in cm(-1) A = 0.023796 B = 0.007030 C = 0.005719 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1176.390192 B = 3981.952500 C = 4894.654781 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.039 4.039 3 Si 1.122 2.878 4 H -0.274 1.274 5 H -0.265 1.265 6 H -0.282 1.282 7 C -0.619 4.619 8 H 0.053 0.947 9 C 0.026 3.974 10 C 0.076 3.924 11 N -0.530 5.530 12 C 0.043 3.957 13 C 0.532 3.468 14 O -0.588 6.588 15 N -0.698 5.698 16 C 0.133 3.867 17 C 0.065 3.935 18 H 0.109 0.891 19 C 0.494 3.506 20 O -0.522 6.522 21 O -0.501 6.501 22 H 0.255 0.745 23 H -0.016 1.016 24 H -0.008 1.008 25 H 0.041 0.959 26 H 0.070 0.930 27 H 0.099 0.901 28 H 0.093 0.907 29 H 0.418 0.582 30 H 0.079 0.921 31 H 0.142 0.858 32 H 0.433 0.567 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.004 -17.389 2.473 20.214 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.237 4.237 3 Si 0.942 3.058 4 H -0.199 1.199 5 H -0.190 1.190 6 H -0.208 1.208 7 C -0.658 4.658 8 H 0.071 0.929 9 C -0.012 4.012 10 C -0.051 4.051 11 N -0.258 5.258 12 C -0.088 4.088 13 C 0.319 3.681 14 O -0.468 6.468 15 N -0.351 5.351 16 C 0.009 3.991 17 C -0.045 4.045 18 H 0.126 0.874 19 C 0.334 3.666 20 O -0.410 6.410 21 O -0.315 6.315 22 H 0.064 0.936 23 H 0.003 0.997 24 H 0.010 0.990 25 H 0.059 0.941 26 H 0.088 0.912 27 H 0.117 0.883 28 H 0.111 0.889 29 H 0.257 0.743 30 H 0.097 0.903 31 H 0.159 0.841 32 H 0.295 0.705 Dipole moment (debyes) X Y Z Total from point charges 8.817 -15.609 2.266 18.070 hybrid contribution 0.486 -1.517 0.091 1.595 sum 9.302 -17.126 2.357 19.631 Atomic orbital electron populations 1.70880 1.08043 1.29877 1.48563 1.27490 0.96580 1.06972 0.92629 0.82894 0.74269 0.70837 0.77767 1.19933 1.18958 1.20778 1.22421 0.94685 0.93228 1.55425 0.92906 1.18986 0.94783 0.93194 0.94232 1.22123 0.95471 0.87173 1.00301 1.62458 1.35220 1.02094 1.26061 1.22271 1.01294 0.94477 0.90714 1.20022 0.80488 0.86618 0.81020 1.90753 1.37252 1.80785 1.38037 1.45263 1.48237 1.16004 1.25614 1.21535 0.92378 0.96247 0.88981 1.21736 0.94943 0.93363 0.94427 0.87359 1.22709 0.80166 0.76753 0.86926 1.90839 1.68609 1.33951 1.47593 1.84442 1.29070 1.69009 1.48961 0.93600 0.99735 0.98959 0.94065 0.91183 0.88321 0.88919 0.74327 0.90285 0.84069 0.70460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.97 13.65 21.45 0.29 -59.67 16 2 C -0.04 -2.33 5.46 84.65 0.46 -1.87 16 3 Si 1.12 51.06 29.90 68.60 2.05 53.11 16 4 H -0.27 -11.78 7.11 99.48 0.71 -11.08 16 5 H -0.27 -10.93 7.11 99.48 0.71 -10.22 16 6 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 7 C -0.62 -36.08 9.11 25.60 0.23 -35.84 16 8 H 0.05 2.95 7.74 -2.91 -0.02 2.93 16 9 C 0.03 1.37 4.38 29.85 0.13 1.50 16 10 C 0.08 3.13 4.50 86.30 0.39 3.52 16 11 N -0.53 -17.79 4.36 -880.05 -3.84 -21.63 16 12 C 0.04 1.36 5.34 85.42 0.46 1.81 16 13 C 0.53 15.63 7.81 87.68 0.69 16.31 16 14 O -0.59 -21.50 17.82 -3.04 -0.05 -21.55 16 15 N -0.70 -14.04 5.52 -466.07 -2.57 -16.61 16 16 C 0.13 2.18 6.69 86.47 0.58 2.76 16 17 C 0.06 1.50 2.50 44.11 0.11 1.61 16 18 H 0.11 1.99 8.08 -2.39 -0.02 1.97 16 19 C 0.49 12.16 6.06 71.23 0.43 12.59 16 20 O -0.52 -18.22 15.90 21.97 0.35 -17.87 16 21 O -0.50 -7.89 13.42 -51.41 -0.69 -8.58 16 22 H 0.25 16.68 7.22 -92.71 -0.67 16.01 16 23 H -0.02 -0.95 8.01 -2.39 -0.02 -0.97 16 24 H -0.01 -0.44 6.91 -2.39 -0.02 -0.46 16 25 H 0.04 1.60 7.87 -2.39 -0.02 1.58 16 26 H 0.07 2.97 5.25 -2.39 -0.01 2.95 16 27 H 0.10 3.73 7.09 -2.38 -0.02 3.71 16 28 H 0.09 2.60 7.95 -2.39 -0.02 2.58 16 29 H 0.42 6.44 8.84 -92.71 -0.82 5.62 16 30 H 0.08 1.46 8.11 -2.39 -0.02 1.44 16 31 H 0.14 1.01 8.14 -2.39 -0.02 0.99 16 32 H 0.43 3.50 9.10 -74.06 -0.67 2.82 16 Total: -1.00 -81.33 274.07 -1.21 -82.54 By element: Atomic # 1 Polarization: 8.09 SS G_CDS: -0.23 Total: 7.87 kcal Atomic # 6 Polarization: -1.08 SS G_CDS: 3.48 Total: 2.40 kcal Atomic # 7 Polarization: -91.80 SS G_CDS: -6.12 Total: -97.92 kcal Atomic # 8 Polarization: -47.61 SS G_CDS: -0.39 Total: -48.00 kcal Atomic # 14 Polarization: 51.06 SS G_CDS: 2.05 Total: 53.11 kcal Total: -81.33 -1.21 -82.54 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000230927753.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.773 kcal (2) G-P(sol) polarization free energy of solvation -81.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.099 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.540 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.313 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds