Wall clock time and date at job start Mon Mar 30 2020 03:42:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42900 * 109.47269 * 2 1 4 4 C 1.42903 * 114.00043 * 180.02562 * 3 2 1 5 5 C 1.50700 * 109.46823 * 179.97438 * 4 3 2 6 6 N 1.29942 * 126.28978 * 269.97676 * 5 4 3 7 7 O 1.21306 * 110.25137 * 180.02562 * 6 5 4 8 8 C 1.33645 * 109.81154 * 359.97438 * 7 6 5 9 9 C 1.50691 * 126.55129 * 180.02562 * 8 7 6 10 10 C 1.52996 * 109.47367 * 269.95883 * 9 8 7 11 11 H 1.09008 * 109.47001 * 304.99996 * 10 9 8 12 12 O 1.42904 * 109.47322 * 64.99758 * 10 9 8 13 13 C 1.50702 * 109.47393 * 185.00248 * 10 9 8 14 14 H 1.07997 * 119.99645 * 359.97438 * 13 10 9 15 15 C 1.37875 * 119.99873 * 180.02562 * 13 10 9 16 16 N 1.31512 * 120.00436 * 359.97438 * 15 13 10 17 17 Si 1.86807 * 119.99886 * 179.97438 * 15 13 10 18 18 H 1.48506 * 109.46976 * 59.99456 * 17 15 13 19 19 H 1.48499 * 109.47252 * 179.97438 * 17 15 13 20 20 H 1.48498 * 109.46767 * 299.99777 * 17 15 13 21 21 N 1.31138 * 106.89453 * 0.02562 * 8 7 6 22 22 H 1.09003 * 109.47090 * 299.99753 * 1 2 3 23 23 H 1.08996 * 109.47391 * 60.00064 * 1 2 3 24 24 H 1.09004 * 109.47219 * 179.97438 * 1 2 3 25 25 H 1.09003 * 109.47090 * 240.00247 * 2 1 3 26 26 H 1.09004 * 109.47574 * 120.00767 * 2 1 3 27 27 H 1.08999 * 109.46746 * 60.00583 * 4 3 2 28 28 H 1.09000 * 109.47173 * 300.00046 * 4 3 2 29 29 H 1.09001 * 109.47255 * 29.96194 * 9 8 7 30 30 H 1.09000 * 109.47143 * 149.95492 * 9 8 7 31 31 H 0.96702 * 113.99482 * 60.00352 * 12 10 9 32 32 H 0.97001 * 120.00270 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4601 -0.0006 5 6 3.8194 2.9161 -0.0012 6 7 4.0177 3.6588 -1.0488 7 8 4.3188 4.7852 -0.7141 8 6 4.3413 4.8708 0.6194 9 6 4.6679 6.0953 1.4347 10 6 6.1719 6.1372 1.7119 11 1 6.4803 5.2050 2.1852 12 8 6.8787 6.3031 0.4810 13 6 6.4818 7.2925 2.6287 14 1 5.6856 7.9329 2.9783 15 6 7.7818 7.5323 3.0203 16 7 8.7514 6.7527 2.5941 17 14 8.1660 8.9647 4.1562 18 1 7.4318 8.7926 5.4355 19 1 9.6258 9.0054 4.4253 20 1 7.7456 10.2345 3.5111 21 7 4.0248 3.6855 1.0827 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3634 -1.0277 -0.0005 25 1 1.8933 -0.5138 -0.8900 26 1 1.8934 -0.5140 0.8899 27 1 3.8332 0.9767 -0.8909 28 1 3.8341 0.9764 0.8892 29 1 4.3751 6.9883 0.8824 30 1 4.1252 6.0582 2.3793 31 1 6.6537 7.1139 0.0045 32 1 9.6660 6.9212 2.8699 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000233761564.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:42:48 Heat of formation + Delta-G solvation = -36.738417 kcal Electronic energy + Delta-G solvation = -17000.932471 eV Core-core repulsion = 13965.140448 eV Total energy + Delta-G solvation = -3035.792023 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 242.110 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -45.12517 -38.28884 -36.35905 -35.34069 -32.94254 -32.21965 -31.47412 -29.46230 -27.47725 -25.82675 -23.22915 -23.01824 -21.84038 -20.54092 -17.81966 -17.39203 -16.89982 -16.63467 -16.13509 -15.19202 -14.68754 -14.60882 -13.96213 -13.94196 -13.40850 -12.95458 -12.86342 -12.59405 -12.07468 -11.64977 -11.60080 -11.37216 -11.14259 -11.06254 -10.91836 -10.86096 -10.60529 -10.19135 -9.86444 -9.81083 -9.13073 -8.67132 -8.32661 -6.10260 -4.30912 1.56997 2.45569 3.25773 3.30758 3.31845 3.35405 3.49644 4.17692 4.32023 4.36296 4.80888 4.91511 5.09490 5.12917 5.15920 5.21080 5.43742 5.58787 5.67348 5.86240 5.87749 5.96426 6.07849 6.25378 6.41264 6.57446 6.91451 7.52124 7.71958 7.98654 8.57927 8.70753 9.24626 9.46086 10.94110 Molecular weight = 242.11amu Principal moments of inertia in cm(-1) A = 0.052185 B = 0.004295 C = 0.004195 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 536.426980 B = 6518.204091 C = 6673.777290 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.058 3.942 3 O -0.383 6.383 4 C 0.163 3.837 5 C 0.160 3.840 6 N -0.381 5.381 7 O 0.081 5.919 8 C 0.221 3.779 9 C -0.062 4.062 10 C 0.236 3.764 11 H 0.065 0.935 12 O -0.564 6.564 13 C -0.577 4.577 14 H 0.062 0.938 15 C 0.081 3.919 16 N -0.856 5.856 17 Si 0.895 3.105 18 H -0.275 1.275 19 H -0.286 1.286 20 H -0.274 1.274 21 N -0.488 5.488 22 H 0.064 0.936 23 H 0.062 0.938 24 H 0.072 0.928 25 H 0.051 0.949 26 H 0.053 0.947 27 H 0.076 0.924 28 H 0.083 0.917 29 H 0.093 0.907 30 H 0.109 0.891 31 H 0.350 0.650 32 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.538 -8.979 -4.229 15.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.019 4.019 3 O -0.302 6.302 4 C 0.085 3.915 5 C -0.113 4.113 6 N -0.091 5.091 7 O 0.021 5.979 8 C 0.002 3.998 9 C -0.102 4.102 10 C 0.177 3.823 11 H 0.083 0.917 12 O -0.367 6.367 13 C -0.614 4.614 14 H 0.080 0.920 15 C -0.126 4.126 16 N -0.491 5.491 17 Si 0.722 3.278 18 H -0.200 1.200 19 H -0.212 1.212 20 H -0.200 1.200 21 N -0.222 5.222 22 H 0.083 0.917 23 H 0.082 0.918 24 H 0.091 0.909 25 H 0.069 0.931 26 H 0.071 0.929 27 H 0.094 0.906 28 H 0.101 0.899 29 H 0.112 0.888 30 H 0.127 0.873 31 H 0.194 0.806 32 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -11.382 -10.104 -4.546 15.884 hybrid contribution 0.248 1.172 0.586 1.334 sum -11.135 -8.932 -3.960 14.814 Atomic orbital electron populations 1.21740 0.93513 1.02244 1.03331 1.22503 0.95780 0.83159 1.00409 1.87942 1.19661 1.27043 1.95539 1.20257 0.82313 0.86417 1.02543 1.25162 1.02385 0.99252 0.84499 1.74530 1.18460 0.91895 1.24174 1.85275 1.62541 1.24425 1.25619 1.29315 0.91840 0.97300 0.81360 1.21585 1.04145 0.87487 0.96969 1.19458 0.80836 0.98495 0.83462 0.91722 1.86613 1.69190 1.44326 1.36550 1.21474 0.93723 1.14578 1.31656 0.91981 1.25039 0.96281 0.96154 0.95156 1.70067 1.00190 1.36917 1.41947 0.86632 0.77325 0.82638 0.81186 1.19999 1.21181 1.19977 1.71881 1.20257 1.01236 1.28854 0.91686 0.91841 0.90935 0.93108 0.92898 0.90616 0.89946 0.88820 0.87287 0.80586 0.92682 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.26 10.28 37.16 0.38 -0.88 16 2 C 0.06 0.57 6.66 37.16 0.25 0.81 16 3 O -0.38 -5.47 10.33 -35.23 -0.36 -5.83 16 4 C 0.16 2.31 6.56 36.01 0.24 2.55 16 5 C 0.16 2.97 7.85 -156.38 -1.23 1.75 16 6 N -0.38 -7.40 12.16 30.90 0.38 -7.03 16 7 O 0.08 1.59 11.31 18.09 0.20 1.80 16 8 C 0.22 4.35 7.54 -13.05 -0.10 4.25 16 9 C -0.06 -1.18 5.46 -27.89 -0.15 -1.34 16 10 C 0.24 5.67 2.81 -27.88 -0.08 5.59 16 11 H 0.07 1.76 8.14 -51.92 -0.42 1.34 16 12 O -0.56 -13.88 12.48 -35.23 -0.44 -14.32 16 13 C -0.58 -14.82 8.76 -34.44 -0.30 -15.12 16 14 H 0.06 1.51 7.74 -52.49 -0.41 1.10 16 15 C 0.08 2.17 5.40 -17.82 -0.10 2.07 16 16 N -0.86 -24.60 12.84 55.43 0.71 -23.89 16 17 Si 0.90 20.30 29.54 -169.99 -5.02 15.28 16 18 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 19 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 20 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 21 N -0.49 -9.84 11.55 -9.87 -0.11 -9.96 16 22 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 23 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 24 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 25 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 26 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 28 H 0.08 1.04 8.14 -51.93 -0.42 0.61 16 29 H 0.09 1.54 8.14 -51.93 -0.42 1.12 16 30 H 0.11 1.96 8.14 -51.93 -0.42 1.53 16 31 H 0.35 7.37 9.04 45.56 0.41 7.79 16 32 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 LS Contribution 289.35 15.07 4.36 4.36 Total: -1.00 -31.56 289.35 -4.73 -36.29 By element: Atomic # 1 Polarization: 6.97 SS G_CDS: -3.36 Total: 3.62 kcal Atomic # 6 Polarization: 0.78 SS G_CDS: -1.09 Total: -0.31 kcal Atomic # 7 Polarization: -41.85 SS G_CDS: 0.97 Total: -40.88 kcal Atomic # 8 Polarization: -17.75 SS G_CDS: -0.60 Total: -18.35 kcal Atomic # 14 Polarization: 20.30 SS G_CDS: -5.02 Total: 15.28 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -31.56 -4.73 -36.29 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000233761564.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.449 kcal (2) G-P(sol) polarization free energy of solvation -31.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.007 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.732 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.290 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.738 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds