Wall clock time and date at job start Mon Mar 30 2020 03:44:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42895 * 114.00575 * 2 1 4 4 C 1.52998 * 109.47529 * 180.02562 * 3 2 1 5 5 O 1.42899 * 109.47258 * 64.99575 * 4 3 2 6 6 C 1.42895 * 113.99773 * 180.02562 * 5 4 3 7 7 C 1.53002 * 109.47074 * 179.97438 * 6 5 4 8 8 C 1.50706 * 109.46925 * 180.02562 * 7 6 5 9 9 N 1.30450 * 126.07274 * 90.02970 * 8 7 6 10 10 O 1.21273 * 110.68586 * 179.97438 * 9 8 7 11 11 C 1.34757 * 109.53374 * 0.02562 * 10 9 8 12 12 C 1.40340 * 126.79168 * 179.97438 * 11 10 9 13 13 H 1.07999 * 119.99645 * 179.97438 * 12 11 10 14 14 C 1.40458 * 120.00464 * 359.97438 * 12 11 10 15 15 N 1.30510 * 119.99849 * 359.97438 * 14 12 11 16 16 Si 1.86792 * 120.00164 * 179.97438 * 14 12 11 17 17 H 1.48510 * 109.47115 * 89.99681 * 16 14 12 18 18 H 1.48498 * 109.47353 * 209.99371 * 16 14 12 19 19 H 1.48499 * 109.47154 * 329.99764 * 16 14 12 20 20 N 1.33330 * 106.40929 * 359.73801 * 11 10 9 21 21 H 1.08999 * 109.47189 * 59.99519 * 1 2 3 22 22 H 1.09002 * 109.47683 * 180.02562 * 1 2 3 23 23 H 1.09005 * 109.46617 * 299.99961 * 1 2 3 24 24 H 1.08996 * 109.47294 * 59.99610 * 3 2 1 25 25 H 1.09007 * 109.46595 * 300.00292 * 3 2 1 26 26 H 1.09005 * 109.46619 * 304.99929 * 4 3 2 27 27 H 1.08997 * 109.46991 * 184.99970 * 4 3 2 28 28 H 1.09004 * 109.47055 * 60.00292 * 6 5 4 29 29 H 1.09004 * 109.47689 * 300.00228 * 6 5 4 30 30 H 1.09000 * 109.46497 * 60.00393 * 7 6 5 31 31 H 1.09000 * 109.47312 * 300.00173 * 7 6 5 32 32 H 0.96995 * 120.00153 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1845 -0.0006 5 8 3.9649 0.5794 -1.2219 6 6 5.3811 0.4189 -1.3244 7 6 5.7245 -0.2355 -2.6642 8 6 7.2181 -0.4053 -2.7720 9 7 7.9031 -1.4446 -2.3818 10 8 9.0851 -1.2859 -2.6017 11 6 9.2788 -0.0823 -3.1761 12 6 10.5047 0.4685 -3.5802 13 1 10.5332 1.4489 -4.0324 14 6 11.6945 -0.2550 -3.3966 15 7 11.6601 -1.4395 -2.8497 16 14 13.3260 0.4780 -3.9353 17 1 13.9155 1.2518 -2.8131 18 1 14.2543 -0.6134 -4.3254 19 1 13.1052 1.3784 -5.0953 20 7 8.0749 0.4793 -3.2891 21 1 -0.3633 0.5139 -0.8899 22 1 -0.3634 -1.0276 0.0005 23 1 -0.3633 0.5139 0.8901 24 1 1.6887 1.8463 0.8899 25 1 1.6886 1.8463 -0.8900 26 1 3.8514 0.5680 0.8410 27 1 3.9786 2.1763 0.0889 28 1 5.7349 -0.2137 -0.5103 29 1 5.8629 1.3947 -1.2622 30 1 5.3706 0.3968 -3.4785 31 1 5.2428 -1.2113 -2.7260 32 1 12.4817 -1.9390 -2.7226 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000234674662.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:44:08 Heat of formation + Delta-G solvation = -51.856100 kcal Electronic energy + Delta-G solvation = -16638.527176 eV Core-core repulsion = 13602.079601 eV Total energy + Delta-G solvation = -3036.447575 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 242.110 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -43.02761 -38.45925 -37.22481 -34.20784 -34.10726 -31.73537 -30.34872 -28.85283 -26.49498 -26.36397 -23.35419 -22.57465 -21.56831 -20.37599 -17.63616 -16.95465 -16.72508 -15.85048 -15.55576 -15.45593 -15.35369 -15.23885 -14.72842 -13.66328 -13.59044 -12.99518 -12.71084 -12.31111 -11.82233 -11.65963 -11.52585 -11.47248 -11.37190 -11.01600 -10.88910 -10.49429 -10.06750 -9.93441 -9.83725 -9.49559 -9.39965 -8.90673 -8.27191 -7.08595 -5.02617 2.78655 2.96000 3.02085 3.22606 3.61840 3.66506 3.73598 4.04009 4.88909 5.00463 5.04999 5.14212 5.18047 5.20063 5.33107 5.39701 5.42285 5.50010 5.54489 5.62029 5.70609 5.89997 6.03359 6.36603 6.71672 6.84926 6.99535 7.36846 7.41324 7.89857 8.10569 8.31961 8.46570 9.90732 10.38519 Molecular weight = 242.11amu Principal moments of inertia in cm(-1) A = 0.074488 B = 0.003617 C = 0.003550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 375.810114 B = 7739.030043 C = 7885.569921 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.382 6.382 3 C 0.064 3.936 4 C 0.063 3.937 5 O -0.382 6.382 6 C 0.074 3.926 7 C -0.010 4.010 8 C 0.158 3.842 9 N -0.467 5.467 10 O 0.047 5.953 11 C 0.301 3.699 12 C -0.416 4.416 13 H 0.113 0.887 14 C 0.070 3.930 15 N -0.764 5.764 16 Si 0.937 3.063 17 H -0.264 1.264 18 H -0.272 1.272 19 H -0.256 1.256 20 N -0.612 5.612 21 H 0.041 0.959 22 H 0.085 0.915 23 H 0.038 0.962 24 H 0.062 0.938 25 H 0.058 0.942 26 H 0.056 0.944 27 H 0.064 0.936 28 H 0.050 0.950 29 H 0.054 0.946 30 H 0.086 0.914 31 H 0.082 0.918 32 H 0.292 0.708 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.252 4.739 4.869 13.144 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.301 6.301 3 C -0.013 4.013 4 C -0.014 4.014 5 O -0.301 6.301 6 C -0.003 4.003 7 C -0.049 4.049 8 C -0.116 4.116 9 N -0.196 5.196 10 O -0.001 6.001 11 C 0.110 3.890 12 C -0.454 4.454 13 H 0.131 0.869 14 C -0.155 4.155 15 N -0.391 5.391 16 Si 0.759 3.241 17 H -0.189 1.189 18 H -0.197 1.197 19 H -0.180 1.180 20 N -0.357 5.357 21 H 0.059 0.941 22 H 0.103 0.897 23 H 0.056 0.944 24 H 0.080 0.920 25 H 0.076 0.924 26 H 0.075 0.925 27 H 0.082 0.918 28 H 0.069 0.931 29 H 0.072 0.928 30 H 0.105 0.895 31 H 0.100 0.900 32 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -11.755 3.962 5.017 13.381 hybrid contribution 0.914 0.577 0.018 1.082 sum -10.841 4.539 5.036 12.786 Atomic orbital electron populations 1.22735 0.81357 1.02765 0.99702 1.87993 1.19346 1.27437 1.95326 1.22578 0.92653 0.85358 1.00668 1.22465 0.92952 0.97695 0.88238 1.87873 1.22696 1.82050 1.37507 1.22397 0.80267 0.99849 0.97836 1.19342 0.86836 1.01851 0.96886 1.24664 0.97586 0.89481 0.99834 1.74328 0.91693 1.25079 1.28545 1.85535 1.17853 1.34909 1.61789 1.24242 0.94204 0.81281 0.89223 1.18572 0.86106 1.04121 1.36567 0.86933 1.26206 1.02320 0.94217 0.92748 1.69635 1.31676 1.09692 1.28095 0.85828 0.78630 0.79472 0.80131 1.18876 1.19711 1.17973 1.72237 0.98624 1.30872 1.33936 0.94065 0.89657 0.94364 0.92019 0.92365 0.92535 0.91785 0.93138 0.92805 0.89536 0.89990 0.89656 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 11.01 101.05 1.11 1.39 16 2 O -0.38 -4.99 10.67 -40.08 -0.43 -5.42 16 3 C 0.06 0.70 6.32 37.16 0.23 0.94 16 4 C 0.06 0.81 6.32 37.16 0.23 1.05 16 5 O -0.38 -6.38 10.31 -40.08 -0.41 -6.79 16 6 C 0.07 1.34 5.92 37.16 0.22 1.56 16 7 C -0.01 -0.21 6.21 -27.88 -0.17 -0.38 16 8 C 0.16 4.08 7.43 -156.78 -1.17 2.91 16 9 N -0.47 -13.04 12.15 31.51 0.38 -12.66 16 10 O 0.05 1.38 9.74 15.12 0.15 1.53 16 11 C 0.30 8.67 7.82 -16.35 -0.13 8.54 16 12 C -0.42 -11.04 9.48 -37.96 -0.36 -11.40 16 13 H 0.11 2.81 7.85 -52.49 -0.41 2.39 16 14 C 0.07 1.70 5.50 -17.28 -0.10 1.60 16 15 N -0.76 -19.53 12.06 55.57 0.67 -18.86 16 16 Si 0.94 17.57 29.56 -169.99 -5.03 12.54 16 17 H -0.26 -4.84 7.11 56.52 0.40 -4.44 16 18 H -0.27 -4.94 7.11 56.52 0.40 -4.54 16 19 H -0.26 -4.71 7.11 56.52 0.40 -4.31 16 20 N -0.61 -17.03 11.61 -11.51 -0.13 -17.16 16 21 H 0.04 0.33 8.14 -51.93 -0.42 -0.10 16 22 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 23 H 0.04 0.27 8.14 -51.93 -0.42 -0.15 16 24 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 25 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 26 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 27 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 28 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16 29 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 30 H 0.09 1.67 8.14 -51.93 -0.42 1.25 16 31 H 0.08 1.60 8.14 -51.93 -0.42 1.17 16 32 H 0.29 6.60 8.29 -40.82 -0.34 6.26 16 LS Contribution 289.14 15.07 4.36 4.36 Total: -1.00 -31.81 289.14 -4.76 -36.57 By element: Atomic # 1 Polarization: 3.88 SS G_CDS: -4.20 Total: -0.32 kcal Atomic # 6 Polarization: 6.34 SS G_CDS: -0.12 Total: 6.22 kcal Atomic # 7 Polarization: -49.60 SS G_CDS: 0.92 Total: -48.68 kcal Atomic # 8 Polarization: -9.99 SS G_CDS: -0.69 Total: -10.68 kcal Atomic # 14 Polarization: 17.57 SS G_CDS: -5.03 Total: 12.54 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -31.81 -4.76 -36.57 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000234674662.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.289 kcal (2) G-P(sol) polarization free energy of solvation -31.810 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.099 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.757 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.567 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.856 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds