Wall clock time and date at job start Mon Mar 30 2020 03:44:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42895 * 114.00575 * 2 1 4 4 C 1.52998 * 109.47529 * 180.02562 * 3 2 1 5 5 O 1.42899 * 109.47258 * 64.99575 * 4 3 2 6 6 C 1.42895 * 113.99773 * 180.02562 * 5 4 3 7 7 C 1.53002 * 109.47074 * 179.97438 * 6 5 4 8 8 C 1.50706 * 109.46925 * 180.02562 * 7 6 5 9 9 N 1.30450 * 126.07274 * 90.02970 * 8 7 6 10 10 O 1.21273 * 110.68586 * 179.97438 * 9 8 7 11 11 C 1.34757 * 109.53374 * 0.02562 * 10 9 8 12 12 C 1.40340 * 126.79168 * 179.97438 * 11 10 9 13 13 H 1.07999 * 119.99645 * 179.97438 * 12 11 10 14 14 C 1.40458 * 120.00464 * 359.97438 * 12 11 10 15 15 N 1.30510 * 119.99849 * 359.97438 * 14 12 11 16 16 Si 1.86792 * 120.00164 * 179.97438 * 14 12 11 17 17 H 1.48510 * 109.47115 * 89.99681 * 16 14 12 18 18 H 1.48498 * 109.47353 * 209.99371 * 16 14 12 19 19 H 1.48499 * 109.47154 * 329.99764 * 16 14 12 20 20 N 1.33330 * 106.40929 * 359.73801 * 11 10 9 21 21 H 1.08999 * 109.47189 * 59.99519 * 1 2 3 22 22 H 1.09002 * 109.47683 * 180.02562 * 1 2 3 23 23 H 1.09005 * 109.46617 * 299.99961 * 1 2 3 24 24 H 1.08996 * 109.47294 * 59.99610 * 3 2 1 25 25 H 1.09007 * 109.46595 * 300.00292 * 3 2 1 26 26 H 1.09005 * 109.46619 * 304.99929 * 4 3 2 27 27 H 1.08997 * 109.46991 * 184.99970 * 4 3 2 28 28 H 1.09004 * 109.47055 * 60.00292 * 6 5 4 29 29 H 1.09004 * 109.47689 * 300.00228 * 6 5 4 30 30 H 1.09000 * 109.46497 * 60.00393 * 7 6 5 31 31 H 1.09000 * 109.47312 * 300.00173 * 7 6 5 32 32 H 0.96995 * 120.00153 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1845 -0.0006 5 8 3.9649 0.5794 -1.2219 6 6 5.3811 0.4189 -1.3244 7 6 5.7245 -0.2355 -2.6642 8 6 7.2181 -0.4053 -2.7720 9 7 7.9031 -1.4446 -2.3818 10 8 9.0851 -1.2859 -2.6017 11 6 9.2788 -0.0823 -3.1761 12 6 10.5047 0.4685 -3.5802 13 1 10.5332 1.4489 -4.0324 14 6 11.6945 -0.2550 -3.3966 15 7 11.6601 -1.4395 -2.8497 16 14 13.3260 0.4780 -3.9353 17 1 13.9155 1.2518 -2.8131 18 1 14.2543 -0.6134 -4.3254 19 1 13.1052 1.3784 -5.0953 20 7 8.0749 0.4793 -3.2891 21 1 -0.3633 0.5139 -0.8899 22 1 -0.3634 -1.0276 0.0005 23 1 -0.3633 0.5139 0.8901 24 1 1.6887 1.8463 0.8899 25 1 1.6886 1.8463 -0.8900 26 1 3.8514 0.5680 0.8410 27 1 3.9786 2.1763 0.0889 28 1 5.7349 -0.2137 -0.5103 29 1 5.8629 1.3947 -1.2622 30 1 5.3706 0.3968 -3.4785 31 1 5.2428 -1.2113 -2.7260 32 1 12.4817 -1.9390 -2.7226 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000234674662.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:44:07 Heat of formation + Delta-G solvation = -76.293501 kcal Electronic energy + Delta-G solvation = -16639.586862 eV Core-core repulsion = 13602.079601 eV Total energy + Delta-G solvation = -3037.507260 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 242.110 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -45.09123 -39.52639 -38.30245 -36.10946 -36.08532 -33.48388 -31.82596 -30.30762 -28.52479 -27.13554 -24.97673 -23.62678 -23.53021 -22.28550 -19.54919 -18.14172 -17.85225 -17.70539 -17.35381 -16.96402 -16.44944 -16.32897 -16.25935 -15.26452 -14.78979 -14.41942 -14.28498 -13.59072 -13.44172 -13.14806 -13.08608 -12.91938 -12.55772 -12.29054 -12.11614 -11.99676 -11.94393 -11.82747 -11.37803 -11.02122 -10.69310 -10.61523 -10.33111 -8.96298 -7.11351 0.96059 1.41728 1.50638 1.62297 1.94577 2.15887 2.53475 2.86999 3.01060 3.26104 3.62525 3.80652 3.97212 4.15523 4.20330 4.28056 4.35337 4.45107 4.49566 4.57566 4.59250 4.71708 4.82600 4.86990 4.93268 4.94972 5.47131 5.85547 6.05405 6.08279 6.27388 6.27706 6.43590 8.05786 8.27919 Molecular weight = 242.11amu Principal moments of inertia in cm(-1) A = 0.074488 B = 0.003617 C = 0.003550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 375.810114 B = 7739.030043 C = 7885.569921 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.419 6.419 3 C 0.064 3.936 4 C 0.052 3.948 5 O -0.394 6.394 6 C 0.089 3.911 7 C -0.008 4.008 8 C 0.169 3.831 9 N -0.494 5.494 10 O 0.013 5.987 11 C 0.269 3.731 12 C -0.431 4.431 13 H 0.124 0.876 14 C 0.027 3.973 15 N -0.795 5.795 16 Si 1.024 2.976 17 H -0.253 1.253 18 H -0.259 1.259 19 H -0.248 1.248 20 N -0.635 5.635 21 H 0.048 0.952 22 H 0.090 0.910 23 H 0.057 0.943 24 H 0.094 0.906 25 H 0.062 0.938 26 H 0.055 0.945 27 H 0.085 0.915 28 H 0.042 0.958 29 H 0.053 0.947 30 H 0.098 0.902 31 H 0.089 0.911 32 H 0.307 0.693 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.853 6.020 4.882 13.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.339 6.339 3 C -0.012 4.012 4 C -0.024 4.024 5 O -0.314 6.314 6 C 0.011 3.989 7 C -0.047 4.047 8 C -0.106 4.106 9 N -0.229 5.229 10 O -0.029 6.029 11 C 0.081 3.919 12 C -0.468 4.468 13 H 0.142 0.858 14 C -0.195 4.195 15 N -0.422 5.422 16 Si 0.840 3.160 17 H -0.177 1.177 18 H -0.183 1.183 19 H -0.171 1.171 20 N -0.381 5.381 21 H 0.067 0.933 22 H 0.109 0.891 23 H 0.076 0.924 24 H 0.112 0.888 25 H 0.081 0.919 26 H 0.073 0.927 27 H 0.103 0.897 28 H 0.060 0.940 29 H 0.071 0.929 30 H 0.116 0.884 31 H 0.108 0.892 32 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -11.356 5.235 5.040 13.482 hybrid contribution 0.739 0.173 0.041 0.760 sum -10.618 5.408 5.081 12.954 Atomic orbital electron populations 1.22918 0.79467 1.03655 1.01004 1.87936 1.21577 1.28735 1.95632 1.22687 0.91062 0.85048 1.02406 1.22822 0.94637 0.98434 0.86553 1.87847 1.21189 1.82692 1.39639 1.22060 0.81532 0.99273 0.96011 1.19486 0.83529 1.02898 0.98793 1.25444 0.99433 0.88243 0.97462 1.74269 0.91559 1.26364 1.30725 1.85475 1.18663 1.35546 1.63201 1.24869 0.95425 0.81593 0.90047 1.19166 0.86576 1.04860 1.36227 0.85847 1.27427 1.06016 0.94170 0.91847 1.69692 1.33892 1.11043 1.27572 0.84590 0.72549 0.78878 0.80021 1.17674 1.18331 1.17087 1.72229 0.98822 1.31656 1.35377 0.93345 0.89124 0.92408 0.88806 0.91946 0.92690 0.89690 0.93973 0.92867 0.88363 0.89211 0.88194 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.41 11.01 113.37 1.25 1.66 16 2 O -0.42 -10.41 10.67 -144.34 -1.54 -11.95 16 3 C 0.06 1.28 6.32 71.98 0.45 1.74 16 4 C 0.05 1.26 6.32 71.98 0.45 1.71 16 5 O -0.39 -12.83 10.31 -144.34 -1.49 -14.31 16 6 C 0.09 3.22 5.92 71.98 0.43 3.64 16 7 C -0.01 -0.33 6.21 29.85 0.19 -0.15 16 8 C 0.17 8.86 7.43 138.61 1.03 9.89 16 9 N -0.49 -28.45 12.15 -56.64 -0.69 -29.14 16 10 O 0.01 0.81 9.74 64.19 0.63 1.44 16 11 C 0.27 15.87 7.82 85.06 0.66 16.53 16 12 C -0.43 -23.02 9.48 23.32 0.22 -22.80 16 13 H 0.12 6.12 7.85 -2.91 -0.02 6.09 16 14 C 0.03 1.31 5.50 85.43 0.47 1.78 16 15 N -0.79 -40.66 12.06 21.91 0.26 -40.40 16 16 Si 1.02 34.33 29.56 68.60 2.03 36.36 16 17 H -0.25 -8.03 7.11 99.48 0.71 -7.32 16 18 H -0.26 -8.13 7.11 99.48 0.71 -7.42 16 19 H -0.25 -7.95 7.11 99.48 0.71 -7.24 16 20 N -0.64 -36.05 11.61 -305.23 -3.54 -39.60 16 21 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 22 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 23 H 0.06 0.68 8.14 -2.38 -0.02 0.66 16 24 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 25 H 0.06 1.18 8.14 -2.38 -0.02 1.16 16 26 H 0.05 1.34 8.14 -2.38 -0.02 1.32 16 27 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16 28 H 0.04 1.58 8.14 -2.38 -0.02 1.56 16 29 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 30 H 0.10 3.75 8.14 -2.39 -0.02 3.73 16 31 H 0.09 3.50 8.14 -2.39 -0.02 3.48 16 32 H 0.31 13.63 8.29 -92.71 -0.77 12.86 16 Total: -1.00 -69.88 289.14 1.93 -67.95 By element: Atomic # 1 Polarization: 14.52 SS G_CDS: 1.12 Total: 15.64 kcal Atomic # 6 Polarization: 8.85 SS G_CDS: 5.16 Total: 14.01 kcal Atomic # 7 Polarization: -105.17 SS G_CDS: -3.97 Total: -109.14 kcal Atomic # 8 Polarization: -22.42 SS G_CDS: -2.40 Total: -24.82 kcal Atomic # 14 Polarization: 34.33 SS G_CDS: 2.03 Total: 36.36 kcal Total: -69.88 1.93 -67.95 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000234674662.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.339 kcal (2) G-P(sol) polarization free energy of solvation -69.884 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.930 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.954 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.294 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds