Wall clock time and date at job start Mon Mar 30 2020 03:44:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42895 * 113.99940 * 2 1 4 4 C 1.53001 * 109.46983 * 180.02562 * 3 2 1 5 5 C 1.50703 * 109.47273 * 180.02562 * 4 3 2 6 6 N 1.29942 * 126.28412 * 269.97311 * 5 4 3 7 7 O 1.21298 * 110.24923 * 179.72128 * 6 5 4 8 8 C 1.33638 * 109.81308 * 0.47159 * 7 6 5 9 9 C 1.50694 * 126.55373 * 179.79651 * 8 7 6 10 10 C 1.53004 * 109.47412 * 269.68797 * 9 8 7 11 11 H 1.08998 * 109.47285 * 305.00031 * 10 9 8 12 12 O 1.42896 * 109.46914 * 65.00139 * 10 9 8 13 13 C 1.50700 * 109.47208 * 184.99886 * 10 9 8 14 14 H 1.08002 * 119.99770 * 0.02562 * 13 10 9 15 15 C 1.37871 * 120.00083 * 180.02562 * 13 10 9 16 16 N 1.31514 * 120.00147 * 0.02562 * 15 13 10 17 17 Si 1.86803 * 120.00278 * 180.02562 * 15 13 10 18 18 H 1.48500 * 109.46986 * 270.00126 * 17 15 13 19 19 H 1.48496 * 109.47029 * 30.00143 * 17 15 13 20 20 H 1.48499 * 109.47352 * 149.99973 * 17 15 13 21 21 N 1.31125 * 106.89620 * 359.53684 * 8 7 6 22 22 H 1.09007 * 109.47063 * 180.02562 * 1 2 3 23 23 H 1.09003 * 109.46963 * 299.99969 * 1 2 3 24 24 H 1.08997 * 109.47482 * 60.00001 * 1 2 3 25 25 H 1.08995 * 109.47369 * 60.00288 * 3 2 1 26 26 H 1.08999 * 109.46925 * 299.99821 * 3 2 1 27 27 H 1.08999 * 109.47778 * 59.99684 * 4 3 2 28 28 H 1.09010 * 109.46978 * 300.00006 * 4 3 2 29 29 H 1.09004 * 109.47461 * 149.68636 * 9 8 7 30 30 H 1.09005 * 109.47220 * 29.69074 * 9 8 7 31 31 H 0.96699 * 114.00348 * 60.00046 * 12 10 9 32 32 H 0.97005 * 119.99661 * 359.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1846 -0.0006 5 6 4.1484 2.5613 0.0000 6 7 4.4613 3.2642 -1.0471 7 8 4.9304 4.3313 -0.7116 8 6 4.9718 4.4087 0.6219 9 6 5.4877 5.5656 1.4382 10 6 6.9799 5.3701 1.7140 11 1 7.1382 4.4004 2.1860 12 8 7.7029 5.4241 0.4826 13 6 7.4684 6.4611 2.6316 14 1 6.7830 7.2181 2.9833 15 6 8.7902 6.4930 3.0222 16 7 9.6250 5.5716 2.5935 17 14 9.3956 7.8450 4.1602 18 1 9.8647 8.9992 3.3520 19 1 8.2863 8.2796 5.0465 20 1 10.5172 7.3311 4.9868 21 7 4.4726 3.2879 1.0844 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8899 25 1 1.6886 1.8463 0.8900 26 1 1.6886 1.8463 -0.8900 27 1 3.8568 0.6438 -0.8908 28 1 3.8574 0.6435 0.8892 29 1 4.9467 5.6133 2.3833 30 1 5.3387 6.4942 0.8871 31 1 7.6079 6.2607 0.0071 32 1 9.3106 4.8693 2.0029 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000234684318.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:44:00 Heat of formation + Delta-G solvation = -45.915056 kcal Electronic energy + Delta-G solvation = -17024.472888 eV Core-core repulsion = 13988.282936 eV Total energy + Delta-G solvation = -3036.189952 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 242.110 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -45.23409 -38.25169 -36.69644 -35.79737 -33.43926 -32.24798 -31.18724 -29.40206 -26.88319 -25.38090 -24.28615 -23.01457 -21.79084 -20.62037 -17.84016 -17.55757 -17.07959 -16.56649 -16.23077 -15.34693 -15.21618 -14.38153 -14.15914 -13.81432 -13.66532 -13.40957 -12.84611 -12.55925 -12.30245 -11.87585 -11.65422 -11.58205 -11.22587 -11.11814 -10.81680 -10.69136 -10.33422 -10.17512 -9.95973 -9.92781 -9.29877 -8.58024 -8.24292 -6.46723 -4.33108 1.48744 2.45383 3.22078 3.33845 3.38168 3.40889 3.56536 4.09085 4.31356 4.44251 4.80961 4.84211 5.07214 5.09941 5.14960 5.22327 5.33100 5.38463 5.59982 5.65952 5.76496 5.84620 5.93915 6.10058 6.30743 6.38560 6.82380 7.22555 7.77105 8.21056 8.48277 8.72663 8.92766 9.53506 10.93447 Molecular weight = 242.11amu Principal moments of inertia in cm(-1) A = 0.052563 B = 0.004250 C = 0.004145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 532.564483 B = 6586.490653 C = 6753.862610 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.390 6.390 3 C 0.070 3.930 4 C -0.023 4.023 5 C 0.163 3.837 6 N -0.392 5.392 7 O 0.077 5.923 8 C 0.217 3.783 9 C -0.054 4.054 10 C 0.219 3.781 11 H 0.058 0.942 12 O -0.581 6.581 13 C -0.653 4.653 14 H 0.056 0.944 15 C 0.036 3.964 16 N -0.887 5.887 17 Si 1.072 2.928 18 H -0.286 1.286 19 H -0.287 1.287 20 H -0.283 1.283 21 N -0.495 5.495 22 H 0.088 0.912 23 H 0.042 0.958 24 H 0.041 0.959 25 H 0.057 0.943 26 H 0.052 0.948 27 H 0.097 0.903 28 H 0.103 0.897 29 H 0.110 0.890 30 H 0.094 0.906 31 H 0.358 0.642 32 H 0.285 0.715 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.780 -4.673 -4.274 16.080 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.309 6.309 3 C -0.007 4.007 4 C -0.062 4.062 5 C -0.110 4.110 6 N -0.102 5.102 7 O 0.019 5.981 8 C -0.002 4.002 9 C -0.094 4.094 10 C 0.161 3.839 11 H 0.076 0.924 12 O -0.386 6.386 13 C -0.690 4.690 14 H 0.075 0.925 15 C -0.173 4.173 16 N -0.521 5.521 17 Si 0.900 3.100 18 H -0.213 1.213 19 H -0.213 1.213 20 H -0.209 1.209 21 N -0.229 5.229 22 H 0.106 0.894 23 H 0.061 0.939 24 H 0.060 0.940 25 H 0.076 0.924 26 H 0.071 0.929 27 H 0.116 0.884 28 H 0.122 0.878 29 H 0.128 0.872 30 H 0.113 0.887 31 H 0.204 0.796 32 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -13.425 -5.483 -3.827 14.998 hybrid contribution -1.725 0.355 -0.862 1.960 sum -15.150 -5.129 -4.689 16.668 Atomic orbital electron populations 1.22754 0.80618 1.02856 1.00158 1.87828 1.20021 1.27523 1.95505 1.22372 0.92510 0.84860 1.01002 1.19622 0.92990 0.87725 1.05839 1.25396 1.01436 0.99827 0.84305 1.74555 1.16438 0.95058 1.24143 1.85271 1.58594 1.28786 1.25418 1.29324 0.92348 0.96941 0.81547 1.21407 1.01481 0.89460 0.97028 1.19627 0.82083 0.98786 0.83421 0.92381 1.86529 1.74401 1.40331 1.37305 1.22333 0.98317 1.14239 1.34140 0.92537 1.25846 0.93183 1.00541 0.97769 1.70615 1.37949 1.12984 1.30517 0.83516 0.75770 0.74854 0.75866 1.21285 1.21347 1.20894 1.71914 1.18532 1.03451 1.28978 0.89400 0.93886 0.94013 0.92449 0.92938 0.88432 0.87836 0.87209 0.88740 0.79593 0.90320 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 11.01 101.05 1.11 1.38 16 2 O -0.39 -4.56 10.70 -35.23 -0.38 -4.94 16 3 C 0.07 0.84 5.92 37.16 0.22 1.06 16 4 C -0.02 -0.31 6.21 -27.88 -0.17 -0.48 16 5 C 0.16 2.82 7.47 -156.37 -1.17 1.65 16 6 N -0.39 -7.19 12.16 30.89 0.38 -6.81 16 7 O 0.08 1.44 11.31 18.11 0.20 1.65 16 8 C 0.22 4.11 7.54 -13.06 -0.10 4.01 16 9 C -0.05 -1.01 5.46 -27.88 -0.15 -1.16 16 10 C 0.22 5.18 2.42 -27.88 -0.07 5.12 16 11 H 0.06 1.54 8.01 -51.93 -0.42 1.13 16 12 O -0.58 -13.88 11.77 -35.23 -0.41 -14.30 16 13 C -0.65 -16.91 8.76 -34.44 -0.30 -17.21 16 14 H 0.06 1.41 7.74 -52.49 -0.41 1.00 16 15 C 0.04 0.99 5.40 -17.82 -0.10 0.89 16 16 N -0.89 -26.31 13.53 55.43 0.75 -25.56 16 17 Si 1.07 23.87 29.90 -169.99 -5.08 18.78 16 18 H -0.29 -6.15 7.11 56.52 0.40 -5.74 16 19 H -0.29 -6.04 7.11 56.52 0.40 -5.64 16 20 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 21 N -0.49 -9.42 11.55 -9.88 -0.11 -9.53 16 22 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 23 H 0.04 0.32 8.14 -51.93 -0.42 -0.10 16 24 H 0.04 0.30 8.14 -51.93 -0.42 -0.12 16 25 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 26 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 27 H 0.10 1.21 8.14 -51.93 -0.42 0.79 16 28 H 0.10 1.34 8.14 -51.92 -0.42 0.92 16 29 H 0.11 1.95 8.14 -51.93 -0.42 1.53 16 30 H 0.09 1.54 8.14 -51.93 -0.42 1.12 16 31 H 0.36 7.40 9.04 45.56 0.41 7.82 16 32 H 0.28 8.65 6.47 -40.82 -0.26 8.39 16 LS Contribution 286.96 15.07 4.32 4.32 Total: -1.00 -31.11 286.96 -4.33 -35.45 By element: Atomic # 1 Polarization: 8.96 SS G_CDS: -3.27 Total: 5.68 kcal Atomic # 6 Polarization: -4.02 SS G_CDS: -0.72 Total: -4.75 kcal Atomic # 7 Polarization: -42.91 SS G_CDS: 1.01 Total: -41.90 kcal Atomic # 8 Polarization: -17.00 SS G_CDS: -0.59 Total: -17.59 kcal Atomic # 14 Polarization: 23.87 SS G_CDS: -5.08 Total: 18.78 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -31.11 -4.33 -35.45 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000234684318.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.469 kcal (2) G-P(sol) polarization free energy of solvation -31.112 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.581 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.334 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.446 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.915 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds