Wall clock time and date at job start Mon Mar 30 2020 03:44:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42895 * 113.99940 * 2 1 4 4 C 1.53001 * 109.46983 * 180.02562 * 3 2 1 5 5 C 1.50703 * 109.47273 * 180.02562 * 4 3 2 6 6 N 1.29942 * 126.28412 * 269.97311 * 5 4 3 7 7 O 1.21298 * 110.24923 * 179.72128 * 6 5 4 8 8 C 1.33638 * 109.81308 * 0.47159 * 7 6 5 9 9 C 1.50694 * 126.55373 * 179.79651 * 8 7 6 10 10 C 1.53004 * 109.47412 * 269.68797 * 9 8 7 11 11 H 1.08998 * 109.47285 * 305.00031 * 10 9 8 12 12 O 1.42896 * 109.46914 * 65.00139 * 10 9 8 13 13 C 1.50700 * 109.47208 * 184.99886 * 10 9 8 14 14 H 1.08002 * 119.99770 * 0.02562 * 13 10 9 15 15 C 1.37871 * 120.00083 * 180.02562 * 13 10 9 16 16 N 1.31514 * 120.00147 * 0.02562 * 15 13 10 17 17 Si 1.86803 * 120.00278 * 180.02562 * 15 13 10 18 18 H 1.48500 * 109.46986 * 270.00126 * 17 15 13 19 19 H 1.48496 * 109.47029 * 30.00143 * 17 15 13 20 20 H 1.48499 * 109.47352 * 149.99973 * 17 15 13 21 21 N 1.31125 * 106.89620 * 359.53684 * 8 7 6 22 22 H 1.09007 * 109.47063 * 180.02562 * 1 2 3 23 23 H 1.09003 * 109.46963 * 299.99969 * 1 2 3 24 24 H 1.08997 * 109.47482 * 60.00001 * 1 2 3 25 25 H 1.08995 * 109.47369 * 60.00288 * 3 2 1 26 26 H 1.08999 * 109.46925 * 299.99821 * 3 2 1 27 27 H 1.08999 * 109.47778 * 59.99684 * 4 3 2 28 28 H 1.09010 * 109.46978 * 300.00006 * 4 3 2 29 29 H 1.09004 * 109.47461 * 149.68636 * 9 8 7 30 30 H 1.09005 * 109.47220 * 29.69074 * 9 8 7 31 31 H 0.96699 * 114.00348 * 60.00046 * 12 10 9 32 32 H 0.97005 * 119.99661 * 359.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1846 -0.0006 5 6 4.1484 2.5613 0.0000 6 7 4.4613 3.2642 -1.0471 7 8 4.9304 4.3313 -0.7116 8 6 4.9718 4.4087 0.6219 9 6 5.4877 5.5656 1.4382 10 6 6.9799 5.3701 1.7140 11 1 7.1382 4.4004 2.1860 12 8 7.7029 5.4241 0.4826 13 6 7.4684 6.4611 2.6316 14 1 6.7830 7.2181 2.9833 15 6 8.7902 6.4930 3.0222 16 7 9.6250 5.5716 2.5935 17 14 9.3956 7.8450 4.1602 18 1 9.8647 8.9992 3.3520 19 1 8.2863 8.2796 5.0465 20 1 10.5172 7.3311 4.9868 21 7 4.4726 3.2879 1.0844 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8899 25 1 1.6886 1.8463 0.8900 26 1 1.6886 1.8463 -0.8900 27 1 3.8568 0.6438 -0.8908 28 1 3.8574 0.6435 0.8892 29 1 4.9467 5.6133 2.3833 30 1 5.3387 6.4942 0.8871 31 1 7.6079 6.2607 0.0071 32 1 9.3106 4.8693 2.0029 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000234684318.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:44:00 Heat of formation + Delta-G solvation = -70.893292 kcal Electronic energy + Delta-G solvation = -17025.556026 eV Core-core repulsion = 13988.282936 eV Total energy + Delta-G solvation = -3037.273090 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 242.110 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -46.66839 -39.12600 -38.53868 -37.16852 -34.88828 -34.28869 -32.42486 -30.99713 -27.64250 -27.27380 -25.42868 -24.53954 -23.44011 -22.05404 -19.56296 -19.16293 -18.52557 -17.52088 -17.28647 -16.95787 -16.15379 -16.04886 -15.70963 -15.56042 -14.89253 -14.71892 -14.45834 -13.92438 -13.61275 -13.51805 -12.84850 -12.63391 -12.59233 -12.49729 -12.29950 -12.20046 -12.11367 -11.87974 -11.59448 -10.95352 -10.77485 -10.63402 -10.15988 -8.60936 -6.47478 0.03142 1.05653 1.59874 1.67776 1.77279 1.84583 2.27223 2.60341 2.83878 3.13533 3.18576 3.74568 3.87312 3.92764 4.05661 4.20229 4.20522 4.27630 4.47411 4.47453 4.52556 4.70386 4.77385 4.81047 4.86968 4.89564 5.32699 5.77572 6.03113 6.14652 6.54110 7.04107 7.14743 7.49739 8.77119 Molecular weight = 242.11amu Principal moments of inertia in cm(-1) A = 0.052563 B = 0.004250 C = 0.004145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 532.564483 B = 6586.490653 C = 6753.862610 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.407 6.407 3 C 0.079 3.921 4 C -0.023 4.023 5 C 0.168 3.832 6 N -0.403 5.403 7 O 0.070 5.930 8 C 0.213 3.787 9 C -0.040 4.040 10 C 0.219 3.781 11 H 0.019 0.981 12 O -0.595 6.595 13 C -0.653 4.653 14 H 0.070 0.930 15 C -0.018 4.018 16 N -0.923 5.923 17 Si 1.121 2.879 18 H -0.272 1.272 19 H -0.264 1.264 20 H -0.292 1.292 21 N -0.511 5.511 22 H 0.105 0.895 23 H 0.050 0.950 24 H 0.051 0.949 25 H 0.057 0.943 26 H 0.056 0.944 27 H 0.108 0.892 28 H 0.107 0.893 29 H 0.121 0.879 30 H 0.123 0.877 31 H 0.372 0.628 32 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.284 -3.918 -4.106 17.245 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.326 6.326 3 C 0.001 3.999 4 C -0.062 4.062 5 C -0.105 4.105 6 N -0.114 5.114 7 O 0.015 5.985 8 C -0.006 4.006 9 C -0.079 4.079 10 C 0.161 3.839 11 H 0.037 0.963 12 O -0.402 6.402 13 C -0.690 4.690 14 H 0.089 0.911 15 C -0.220 4.220 16 N -0.559 5.559 17 Si 0.942 3.058 18 H -0.198 1.198 19 H -0.189 1.189 20 H -0.218 1.218 21 N -0.246 5.246 22 H 0.123 0.877 23 H 0.068 0.932 24 H 0.069 0.931 25 H 0.075 0.925 26 H 0.074 0.926 27 H 0.126 0.874 28 H 0.126 0.874 29 H 0.139 0.861 30 H 0.141 0.859 31 H 0.220 0.780 32 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -14.962 -4.707 -3.676 16.110 hybrid contribution -1.336 0.041 -0.955 1.643 sum -16.299 -4.667 -4.631 17.575 Atomic orbital electron populations 1.22994 0.78770 1.04349 1.00996 1.87797 1.22030 1.27154 1.95631 1.22212 0.91278 0.85237 1.01157 1.19787 0.94162 0.85708 1.06549 1.25990 1.00349 1.00669 0.83458 1.74548 1.17161 0.95169 1.24552 1.85255 1.58838 1.29135 1.25259 1.29301 0.92558 0.97007 0.81754 1.21166 0.97858 0.90690 0.98169 1.19397 0.85206 0.96255 0.83035 0.96330 1.86475 1.75004 1.41394 1.37310 1.22751 0.98363 1.14404 1.33493 0.91145 1.27342 0.94212 1.01743 0.98719 1.70764 1.38716 1.14139 1.32263 0.82901 0.75763 0.72647 0.74485 1.19782 1.18861 1.21773 1.71930 1.18970 1.03782 1.29879 0.87671 0.93162 0.93055 0.92521 0.92552 0.87371 0.87448 0.86073 0.85854 0.78023 0.92343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.35 11.01 113.37 1.25 1.60 16 2 O -0.41 -8.82 10.70 -148.98 -1.59 -10.41 16 3 C 0.08 1.77 5.92 71.98 0.43 2.19 16 4 C -0.02 -0.60 6.21 29.85 0.19 -0.41 16 5 C 0.17 5.66 7.47 138.46 1.03 6.69 16 6 N -0.40 -14.43 12.16 -60.35 -0.73 -15.17 16 7 O 0.07 2.58 11.31 74.88 0.85 3.43 16 8 C 0.21 7.88 7.54 88.38 0.67 8.54 16 9 C -0.04 -1.43 5.46 29.85 0.16 -1.26 16 10 C 0.22 10.38 2.42 29.85 0.07 10.45 16 11 H 0.02 1.03 8.01 -2.39 -0.02 1.01 16 12 O -0.60 -28.60 11.77 -148.98 -1.75 -30.35 16 13 C -0.65 -33.22 8.76 25.60 0.22 -33.00 16 14 H 0.07 3.34 7.74 -2.91 -0.02 3.31 16 15 C -0.02 -0.98 5.40 84.65 0.46 -0.53 16 16 N -0.92 -55.72 13.53 21.45 0.29 -55.43 16 17 Si 1.12 47.07 29.90 68.60 2.05 49.12 16 18 H -0.27 -10.76 7.11 99.48 0.71 -10.05 16 19 H -0.26 -10.01 7.11 99.48 0.71 -9.30 16 20 H -0.29 -12.57 7.11 99.48 0.71 -11.86 16 21 N -0.51 -19.12 11.55 -303.25 -3.50 -22.62 16 22 H 0.10 1.12 8.14 -2.38 -0.02 1.10 16 23 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 24 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 25 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 26 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 27 H 0.11 2.54 8.14 -2.39 -0.02 2.52 16 28 H 0.11 2.68 8.14 -2.38 -0.02 2.66 16 29 H 0.12 4.07 8.14 -2.38 -0.02 4.05 16 30 H 0.12 3.69 8.14 -2.38 -0.02 3.68 16 31 H 0.37 15.19 9.04 -74.06 -0.67 14.52 16 32 H 0.27 16.71 6.47 -92.70 -0.60 16.11 16 Total: -1.00 -66.44 286.96 0.72 -65.72 By element: Atomic # 1 Polarization: 20.79 SS G_CDS: 0.64 Total: 21.43 kcal Atomic # 6 Polarization: -10.20 SS G_CDS: 4.48 Total: -5.72 kcal Atomic # 7 Polarization: -89.27 SS G_CDS: -3.95 Total: -93.21 kcal Atomic # 8 Polarization: -34.83 SS G_CDS: -2.50 Total: -37.34 kcal Atomic # 14 Polarization: 47.07 SS G_CDS: 2.05 Total: 49.12 kcal Total: -66.44 0.72 -65.72 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000234684318.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.171 kcal (2) G-P(sol) polarization free energy of solvation -66.439 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.609 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.716 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.723 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.893 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds