Wall clock time and date at job start Mon Mar 30 2020 03:44:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42906 * 114.00101 * 2 1 4 4 H 1.08996 * 110.88557 * 32.41903 * 3 2 1 5 5 C 1.55157 * 111.00528 * 156.34674 * 3 2 1 6 6 C 1.54333 * 103.01763 * 153.37946 * 5 3 2 7 7 N 1.47021 * 107.26894 * 338.13966 * 6 5 3 8 8 C 1.34777 * 125.64880 * 178.84609 * 7 6 5 9 9 O 1.21443 * 119.99853 * 179.69339 * 8 7 6 10 10 C 1.48835 * 119.99868 * 359.97268 * 8 7 6 11 11 O 1.21493 * 119.99716 * 359.72083 * 10 8 7 12 12 N 1.34775 * 119.99726 * 179.72021 * 10 8 7 13 13 C 1.36116 * 119.99751 * 179.97438 * 12 10 8 14 14 H 1.08002 * 120.00332 * 0.02562 * 13 12 10 15 15 C 1.39590 * 119.99963 * 180.02562 * 13 12 10 16 16 N 1.31014 * 119.99845 * 0.02562 * 15 13 12 17 17 Si 1.86796 * 120.00013 * 180.02562 * 15 13 12 18 18 H 1.48505 * 109.47330 * 90.00030 * 17 15 13 19 19 H 1.48502 * 109.47465 * 209.99889 * 17 15 13 20 20 H 1.48496 * 109.47402 * 330.00033 * 17 15 13 21 21 C 1.47419 * 108.70170 * 358.58904 * 7 6 5 22 22 H 1.08998 * 109.47195 * 300.00724 * 1 2 3 23 23 H 1.09005 * 109.46937 * 60.00206 * 1 2 3 24 24 H 1.08992 * 109.47139 * 179.97438 * 1 2 3 25 25 H 1.08995 * 110.71924 * 271.93902 * 5 3 2 26 26 H 1.09001 * 110.71443 * 35.21314 * 5 3 2 27 27 H 1.09003 * 109.99322 * 218.66543 * 6 5 3 28 28 H 1.09000 * 109.77927 * 97.50089 * 6 5 3 29 29 H 0.97000 * 119.99932 * 0.02562 * 12 10 8 30 30 H 0.97004 * 119.99995 * 180.02562 * 16 15 13 31 31 H 1.09000 * 110.36871 * 143.19170 * 21 7 6 32 32 H 1.09001 * 110.36875 * 265.51251 * 21 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.3830 2.0101 0.5459 5 6 3.4486 1.2739 0.5811 6 6 4.1250 2.4828 -0.0992 7 7 3.3612 2.7806 -1.3196 8 6 3.6196 3.7827 -2.1831 9 8 2.9224 3.9320 -3.1661 10 6 4.7632 4.7024 -1.9350 11 8 5.4606 4.5529 -0.9515 12 7 5.0250 5.7010 -2.8015 13 6 6.0705 6.5424 -2.5744 14 1 6.6906 6.4096 -1.7001 15 6 6.3414 7.5770 -3.4715 16 7 5.5889 7.7384 -4.5318 17 14 7.7766 8.7313 -3.1602 18 1 8.9987 8.1867 -3.8045 19 1 7.4700 10.0676 -3.7307 20 1 8.0024 8.8574 -1.6979 21 6 2.2697 1.7978 -1.4457 22 1 -0.3633 0.5139 0.8899 23 1 -0.3633 0.5138 -0.8901 24 1 -0.3633 -1.0276 -0.0005 25 1 3.4298 1.3983 1.6638 26 1 3.9550 0.3485 0.3068 27 1 5.1551 2.2370 -0.3573 28 1 4.1036 3.3425 0.5706 29 1 4.4678 5.8205 -3.5865 30 1 5.7773 8.4572 -5.1554 31 1 1.3762 2.2730 -1.8507 32 1 2.5788 0.9668 -2.0797 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000234777588.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:44:23 Heat of formation + Delta-G solvation = -108.260175 kcal Electronic energy + Delta-G solvation = -17400.682101 eV Core-core repulsion = 14361.788662 eV Total energy + Delta-G solvation = -3038.893439 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 242.110 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.95952 -38.50715 -37.12019 -36.12762 -34.19089 -31.49712 -30.79147 -28.70888 -26.84916 -25.79370 -23.81424 -21.68276 -21.05812 -18.96851 -18.17010 -17.18395 -16.72396 -15.99699 -15.38833 -15.18438 -14.85484 -14.74765 -13.99234 -13.92794 -13.46051 -13.17735 -12.88540 -12.44137 -12.20350 -11.94444 -11.78782 -11.52487 -11.38657 -11.20529 -10.68939 -10.52774 -10.42339 -10.29304 -9.82498 -9.72079 -8.35537 -8.22270 -8.20274 -6.67569 -3.99889 2.42258 3.01701 3.14281 3.17144 3.23603 3.69395 4.04657 4.25040 4.42501 4.66944 4.88256 4.97300 5.12711 5.17659 5.20306 5.32461 5.42570 5.51384 5.68741 5.83575 5.85840 6.03228 6.19466 6.25772 6.58358 7.00889 7.30338 7.69915 7.79363 8.27539 8.56250 8.94902 9.31056 9.83977 10.47394 Molecular weight = 242.11amu Principal moments of inertia in cm(-1) A = 0.060178 B = 0.004865 C = 0.004558 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 465.171975 B = 5754.325161 C = 6141.114462 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.376 6.376 3 C 0.073 3.927 4 H 0.079 0.921 5 C -0.131 4.131 6 C 0.120 3.880 7 N -0.602 5.602 8 C 0.528 3.472 9 O -0.546 6.546 10 C 0.398 3.602 11 O -0.591 6.591 12 N -0.499 5.499 13 C -0.305 4.305 14 H 0.113 0.887 15 C 0.031 3.969 16 N -0.869 5.869 17 Si 0.939 3.061 18 H -0.273 1.273 19 H -0.280 1.280 20 H -0.265 1.265 21 C 0.086 3.914 22 H 0.042 0.958 23 H 0.044 0.956 24 H 0.086 0.914 25 H 0.086 0.914 26 H 0.084 0.916 27 H 0.081 0.919 28 H 0.081 0.919 29 H 0.404 0.596 30 H 0.281 0.719 31 H 0.077 0.923 32 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.905 -10.389 7.674 14.646 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.293 6.293 3 C 0.014 3.986 4 H 0.097 0.903 5 C -0.169 4.169 6 C -0.003 4.003 7 N -0.339 5.339 8 C 0.315 3.685 9 O -0.423 6.423 10 C 0.182 3.818 11 O -0.479 6.479 12 N -0.134 5.134 13 C -0.436 4.436 14 H 0.131 0.869 15 C -0.176 4.176 16 N -0.507 5.507 17 Si 0.765 3.235 18 H -0.199 1.199 19 H -0.205 1.205 20 H -0.189 1.189 21 C -0.038 4.038 22 H 0.061 0.939 23 H 0.062 0.938 24 H 0.105 0.895 25 H 0.105 0.895 26 H 0.103 0.897 27 H 0.100 0.900 28 H 0.099 0.901 29 H 0.240 0.760 30 H 0.091 0.909 31 H 0.095 0.905 32 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -6.709 -10.362 7.556 14.474 hybrid contribution 0.034 0.817 -0.463 0.940 sum -6.675 -9.545 7.094 13.638 Atomic orbital electron populations 1.22824 0.80934 1.02781 1.00273 1.87911 1.19825 1.26774 1.94819 1.23302 0.95278 0.84783 0.95199 0.90279 1.22845 0.93674 0.99584 1.00749 1.22035 0.95915 0.96715 0.85639 1.47981 1.31116 1.29422 1.25359 1.20546 0.85762 0.80528 0.81647 1.90694 1.50971 1.72448 1.28174 1.18797 0.88745 0.86427 0.87815 1.90563 1.52466 1.74696 1.30193 1.41545 1.26612 1.23463 1.21757 1.19878 1.06794 1.07266 1.09662 0.86933 1.25590 0.99027 0.98168 0.94814 1.69487 1.37920 1.31833 1.11470 0.85716 0.79978 0.78544 0.79278 1.19895 1.20528 1.18893 1.22609 0.91390 0.92400 0.97370 0.93890 0.93764 0.89547 0.89548 0.89687 0.90030 0.90093 0.76027 0.90910 0.90473 0.90722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 10.89 101.05 1.10 1.34 16 2 O -0.38 -4.38 10.51 -35.23 -0.37 -4.75 16 3 C 0.07 0.89 3.49 -24.58 -0.09 0.80 16 4 H 0.08 0.88 7.90 -51.93 -0.41 0.47 16 5 C -0.13 -1.55 6.68 -24.89 -0.17 -1.72 16 6 C 0.12 1.90 5.49 -3.06 -0.02 1.89 16 7 N -0.60 -11.11 3.33 -171.25 -0.57 -11.67 16 8 C 0.53 11.99 7.89 -11.87 -0.09 11.90 16 9 O -0.55 -13.33 16.72 5.42 0.09 -13.24 16 10 C 0.40 10.11 7.78 -11.87 -0.09 10.02 16 11 O -0.59 -15.49 13.67 5.37 0.07 -15.42 16 12 N -0.50 -13.45 5.25 -11.59 -0.06 -13.51 16 13 C -0.31 -8.40 9.67 -15.15 -0.15 -8.55 16 14 H 0.11 3.14 7.15 -52.49 -0.38 2.76 16 15 C 0.03 0.80 5.51 -17.40 -0.10 0.71 16 16 N -0.87 -23.34 13.03 55.53 0.72 -22.62 16 17 Si 0.94 20.02 29.56 -169.99 -5.02 15.00 16 18 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 19 H -0.28 -5.82 7.11 56.52 0.40 -5.42 16 20 H -0.26 -5.58 7.11 56.52 0.40 -5.18 16 21 C 0.09 1.29 6.64 -2.53 -0.02 1.27 16 22 H 0.04 0.32 8.11 -51.93 -0.42 -0.11 16 23 H 0.04 0.36 8.14 -51.93 -0.42 -0.06 16 24 H 0.09 0.59 8.14 -51.93 -0.42 0.16 16 25 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 26 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 27 H 0.08 1.38 7.69 -51.93 -0.40 0.98 16 28 H 0.08 1.36 7.57 -51.93 -0.39 0.96 16 29 H 0.40 11.02 7.35 -40.82 -0.30 10.72 16 30 H 0.28 6.97 8.30 -40.82 -0.34 6.64 16 31 H 0.08 1.16 8.04 -51.93 -0.42 0.75 16 32 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 LS Contribution 280.25 15.07 4.22 4.22 Total: -1.00 -30.84 280.25 -4.49 -35.33 By element: Atomic # 1 Polarization: 12.97 SS G_CDS: -3.96 Total: 9.00 kcal Atomic # 6 Polarization: 17.27 SS G_CDS: 0.39 Total: 17.66 kcal Atomic # 7 Polarization: -47.90 SS G_CDS: 0.09 Total: -47.81 kcal Atomic # 8 Polarization: -33.20 SS G_CDS: -0.21 Total: -33.41 kcal Atomic # 14 Polarization: 20.02 SS G_CDS: -5.02 Total: 15.00 kcal Total LS contribution 4.22 Total: 4.22 kcal Total: -30.84 -4.49 -35.33 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000234777588.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.930 kcal (2) G-P(sol) polarization free energy of solvation -30.838 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.768 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.492 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.330 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.260 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds