Wall clock time and date at job start Mon Mar 30 2020 03:44:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42906 * 114.00101 * 2 1 4 4 H 1.08996 * 110.88557 * 32.41903 * 3 2 1 5 5 C 1.55157 * 111.00528 * 156.34674 * 3 2 1 6 6 C 1.54333 * 103.01763 * 153.37946 * 5 3 2 7 7 N 1.47021 * 107.26894 * 338.13966 * 6 5 3 8 8 C 1.34777 * 125.64880 * 178.84609 * 7 6 5 9 9 O 1.21443 * 119.99853 * 179.69339 * 8 7 6 10 10 C 1.48835 * 119.99868 * 359.97268 * 8 7 6 11 11 O 1.21493 * 119.99716 * 359.72083 * 10 8 7 12 12 N 1.34775 * 119.99726 * 179.72021 * 10 8 7 13 13 C 1.36116 * 119.99751 * 179.97438 * 12 10 8 14 14 H 1.08002 * 120.00332 * 0.02562 * 13 12 10 15 15 C 1.39590 * 119.99963 * 180.02562 * 13 12 10 16 16 N 1.31014 * 119.99845 * 0.02562 * 15 13 12 17 17 Si 1.86796 * 120.00013 * 180.02562 * 15 13 12 18 18 H 1.48505 * 109.47330 * 90.00030 * 17 15 13 19 19 H 1.48502 * 109.47465 * 209.99889 * 17 15 13 20 20 H 1.48496 * 109.47402 * 330.00033 * 17 15 13 21 21 C 1.47419 * 108.70170 * 358.58904 * 7 6 5 22 22 H 1.08998 * 109.47195 * 300.00724 * 1 2 3 23 23 H 1.09005 * 109.46937 * 60.00206 * 1 2 3 24 24 H 1.08992 * 109.47139 * 179.97438 * 1 2 3 25 25 H 1.08995 * 110.71924 * 271.93902 * 5 3 2 26 26 H 1.09001 * 110.71443 * 35.21314 * 5 3 2 27 27 H 1.09003 * 109.99322 * 218.66543 * 6 5 3 28 28 H 1.09000 * 109.77927 * 97.50089 * 6 5 3 29 29 H 0.97000 * 119.99932 * 0.02562 * 12 10 8 30 30 H 0.97004 * 119.99995 * 180.02562 * 16 15 13 31 31 H 1.09000 * 110.36871 * 143.19170 * 21 7 6 32 32 H 1.09001 * 110.36875 * 265.51251 * 21 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.3830 2.0101 0.5459 5 6 3.4486 1.2739 0.5811 6 6 4.1250 2.4828 -0.0992 7 7 3.3612 2.7806 -1.3196 8 6 3.6196 3.7827 -2.1831 9 8 2.9224 3.9320 -3.1661 10 6 4.7632 4.7024 -1.9350 11 8 5.4606 4.5529 -0.9515 12 7 5.0250 5.7010 -2.8015 13 6 6.0705 6.5424 -2.5744 14 1 6.6906 6.4096 -1.7001 15 6 6.3414 7.5770 -3.4715 16 7 5.5889 7.7384 -4.5318 17 14 7.7766 8.7313 -3.1602 18 1 8.9987 8.1867 -3.8045 19 1 7.4700 10.0676 -3.7307 20 1 8.0024 8.8574 -1.6979 21 6 2.2697 1.7978 -1.4457 22 1 -0.3633 0.5139 0.8899 23 1 -0.3633 0.5138 -0.8901 24 1 -0.3633 -1.0276 -0.0005 25 1 3.4298 1.3983 1.6638 26 1 3.9550 0.3485 0.3068 27 1 5.1551 2.2370 -0.3573 28 1 4.1036 3.3425 0.5706 29 1 4.4678 5.8205 -3.5865 30 1 5.7773 8.4572 -5.1554 31 1 1.3762 2.2730 -1.8507 32 1 2.5788 0.9668 -2.0797 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000234777588.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:44:23 Heat of formation + Delta-G solvation = -131.757712 kcal Electronic energy + Delta-G solvation = -17401.701031 eV Core-core repulsion = 14361.788662 eV Total energy + Delta-G solvation = -3039.912369 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 242.110 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.57459 -39.90687 -38.86887 -37.46325 -36.17853 -33.50657 -32.14392 -29.92973 -28.05549 -27.35416 -25.38235 -23.23811 -22.18351 -20.79016 -20.08648 -18.45304 -18.22612 -17.77064 -16.81402 -16.71890 -16.29453 -15.84403 -15.67768 -15.35925 -15.14628 -14.63816 -14.29449 -13.89892 -13.68366 -13.63770 -12.97098 -12.92890 -12.65075 -12.54490 -12.29574 -12.14450 -12.09886 -11.70577 -11.61998 -10.73133 -10.28668 -10.16999 -9.83818 -8.66227 -6.10943 0.54653 1.39211 1.46741 1.51391 1.61972 2.25923 2.32537 2.72880 3.06153 3.14232 3.48702 3.56757 3.95639 3.97921 4.24919 4.29507 4.45343 4.56457 4.62990 4.71127 4.85048 4.90506 4.94587 5.10688 5.22373 5.25115 5.67737 6.09469 6.16038 6.29594 6.70103 6.93552 7.26309 7.78319 8.49864 Molecular weight = 242.11amu Principal moments of inertia in cm(-1) A = 0.060178 B = 0.004865 C = 0.004558 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 465.171975 B = 5754.325161 C = 6141.114462 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.385 6.385 3 C 0.086 3.914 4 H 0.095 0.905 5 C -0.115 4.115 6 C 0.114 3.886 7 N -0.594 5.594 8 C 0.527 3.473 9 O -0.570 6.570 10 C 0.394 3.606 11 O -0.603 6.603 12 N -0.512 5.512 13 C -0.344 4.344 14 H 0.101 0.899 15 C -0.005 4.005 16 N -0.898 5.898 17 Si 1.012 2.988 18 H -0.265 1.265 19 H -0.267 1.267 20 H -0.262 1.262 21 C 0.079 3.921 22 H 0.057 0.943 23 H 0.044 0.956 24 H 0.104 0.896 25 H 0.116 0.884 26 H 0.093 0.907 27 H 0.068 0.932 28 H 0.072 0.928 29 H 0.399 0.601 30 H 0.289 0.711 31 H 0.075 0.925 32 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.169 -11.083 8.879 15.908 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.303 6.303 3 C 0.027 3.973 4 H 0.113 0.887 5 C -0.153 4.153 6 C -0.008 4.008 7 N -0.328 5.328 8 C 0.313 3.687 9 O -0.450 6.450 10 C 0.179 3.821 11 O -0.492 6.492 12 N -0.146 5.146 13 C -0.473 4.473 14 H 0.119 0.881 15 C -0.210 4.210 16 N -0.535 5.535 17 Si 0.832 3.168 18 H -0.190 1.190 19 H -0.192 1.192 20 H -0.186 1.186 21 C -0.043 4.043 22 H 0.076 0.924 23 H 0.063 0.937 24 H 0.122 0.878 25 H 0.134 0.866 26 H 0.112 0.888 27 H 0.086 0.914 28 H 0.090 0.910 29 H 0.234 0.766 30 H 0.099 0.901 31 H 0.094 0.906 32 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -6.993 -11.103 8.791 15.794 hybrid contribution 0.034 0.909 -0.803 1.213 sum -6.960 -10.194 7.988 14.702 Atomic orbital electron populations 1.23065 0.79224 1.04285 1.01013 1.87903 1.21680 1.26028 1.94688 1.23173 0.95807 0.85555 0.92786 0.88721 1.22791 0.92986 0.97598 1.01940 1.22186 0.95651 0.98371 0.84620 1.48036 1.31749 1.28224 1.24837 1.19991 0.85044 0.81372 0.82284 1.90674 1.51529 1.73454 1.29335 1.19362 0.89231 0.86325 0.87225 1.90533 1.53138 1.75030 1.30473 1.41644 1.26830 1.24196 1.21962 1.19998 1.07854 1.09005 1.10471 0.88101 1.26565 1.01461 0.98960 0.93965 1.69559 1.39291 1.32575 1.12115 0.84673 0.76375 0.76485 0.79250 1.18997 1.19184 1.18623 1.22903 0.89971 0.91421 1.00052 0.92433 0.93749 0.87774 0.86603 0.88846 0.91402 0.90997 0.76635 0.90111 0.90618 0.90429 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.28 10.89 113.37 1.23 1.51 16 2 O -0.39 -7.78 10.51 -148.98 -1.57 -9.35 16 3 C 0.09 1.84 3.49 31.99 0.11 1.95 16 4 H 0.09 1.78 7.90 -2.39 -0.02 1.76 16 5 C -0.12 -2.42 6.68 31.79 0.21 -2.20 16 6 C 0.11 3.52 5.49 86.73 0.48 3.99 16 7 N -0.59 -21.69 3.33 -814.05 -2.71 -24.40 16 8 C 0.53 24.38 7.89 87.08 0.69 25.07 16 9 O -0.57 -28.43 16.72 -3.54 -0.06 -28.48 16 10 C 0.39 20.59 7.78 87.08 0.68 21.26 16 11 O -0.60 -32.33 13.67 -3.69 -0.05 -32.38 16 12 N -0.51 -28.56 5.25 -308.88 -1.62 -30.18 16 13 C -0.34 -19.39 9.67 84.36 0.82 -18.58 16 14 H 0.10 5.80 7.15 -2.91 -0.02 5.78 16 15 C -0.01 -0.28 5.51 85.14 0.47 0.19 16 16 N -0.90 -48.65 13.03 21.77 0.28 -48.37 16 17 Si 1.01 40.75 29.56 68.60 2.03 42.77 16 18 H -0.26 -10.29 7.11 99.48 0.71 -9.58 16 19 H -0.27 -10.16 7.11 99.48 0.71 -9.45 16 20 H -0.26 -10.37 7.11 99.48 0.71 -9.66 16 21 C 0.08 2.26 6.64 86.86 0.58 2.83 16 22 H 0.06 0.65 8.11 -2.39 -0.02 0.63 16 23 H 0.04 0.62 8.14 -2.38 -0.02 0.60 16 24 H 0.10 1.09 8.14 -2.39 -0.02 1.07 16 25 H 0.12 1.82 8.14 -2.39 -0.02 1.80 16 26 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16 27 H 0.07 2.29 7.69 -2.39 -0.02 2.27 16 28 H 0.07 2.37 7.57 -2.39 -0.02 2.35 16 29 H 0.40 22.65 7.35 -92.71 -0.68 21.97 16 30 H 0.29 14.31 8.30 -92.71 -0.77 13.54 16 31 H 0.08 2.20 8.04 -2.39 -0.02 2.18 16 32 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 Total: -1.00 -67.10 280.25 2.03 -65.08 By element: Atomic # 1 Polarization: 28.81 SS G_CDS: 0.46 Total: 29.27 kcal Atomic # 6 Polarization: 30.77 SS G_CDS: 5.26 Total: 36.03 kcal Atomic # 7 Polarization: -98.90 SS G_CDS: -4.04 Total: -102.94 kcal Atomic # 8 Polarization: -68.54 SS G_CDS: -1.68 Total: -70.21 kcal Atomic # 14 Polarization: 40.75 SS G_CDS: 2.03 Total: 42.77 kcal Total: -67.10 2.03 -65.08 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000234777588.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.681 kcal (2) G-P(sol) polarization free energy of solvation -67.105 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.077 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.758 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds