Wall clock time and date at job start Mon Mar 30 2020 03:41:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42890 * 1 3 3 C 1.42902 * 113.99951 * 2 1 4 4 H 1.09000 * 109.47084 * 30.00185 * 3 2 1 5 5 C 1.53001 * 109.47225 * 270.00117 * 3 2 1 6 6 C 1.50700 * 109.47361 * 149.99926 * 3 2 1 7 7 N 1.29954 * 126.28654 * 45.02928 * 6 3 2 8 8 O 1.21293 * 110.25286 * 180.02562 * 7 6 3 9 9 C 1.33642 * 109.81058 * 359.97438 * 8 7 6 10 10 C 1.50698 * 126.55339 * 180.02562 * 9 8 7 11 11 C 1.53001 * 109.47431 * 269.97717 * 10 9 8 12 12 H 1.08997 * 109.47009 * 54.99606 * 11 10 9 13 13 O 1.42904 * 109.46823 * 294.99890 * 11 10 9 14 14 C 1.50693 * 109.47337 * 175.00004 * 11 10 9 15 15 H 1.08000 * 120.00056 * 359.97438 * 14 11 10 16 16 C 1.37884 * 119.99972 * 179.97438 * 14 11 10 17 17 N 1.31513 * 119.99518 * 359.97438 * 16 14 11 18 18 Si 1.86801 * 120.00190 * 179.97438 * 16 14 11 19 19 H 1.48506 * 109.46984 * 359.97438 * 18 16 14 20 20 H 1.48492 * 109.46981 * 119.99863 * 18 16 14 21 21 H 1.48499 * 109.46961 * 240.00144 * 18 16 14 22 22 N 1.31130 * 106.90015 * 0.02562 * 9 8 7 23 23 H 1.09000 * 109.47707 * 299.99528 * 1 2 3 24 24 H 1.09001 * 109.47338 * 60.00134 * 1 2 3 25 25 H 1.09002 * 109.47141 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47145 * 300.00030 * 5 3 2 27 27 H 1.08998 * 109.47160 * 60.00027 * 5 3 2 28 28 H 1.09003 * 109.47390 * 179.97438 * 5 3 2 29 29 H 1.09000 * 109.46935 * 29.97313 * 10 9 8 30 30 H 1.08997 * 109.47416 * 149.97136 * 10 9 8 31 31 H 0.96703 * 113.99943 * 299.99906 * 13 11 10 32 32 H 0.97001 * 119.99427 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 1 1.3449 1.9994 0.5139 5 6 2.2175 1.7714 -1.4425 6 6 3.3385 1.2640 0.7104 7 7 4.2664 0.3675 0.5546 8 8 5.2138 0.6151 1.2703 9 6 4.9734 1.7270 1.9716 10 6 5.8957 2.3738 2.9726 11 6 5.6195 1.8019 4.3645 12 1 5.7040 0.7156 4.3343 13 8 4.3002 2.1658 4.7758 14 6 6.6218 2.3567 5.3435 15 1 7.3803 3.0478 5.0066 16 6 6.5706 1.9820 6.6695 17 7 5.6467 1.1408 7.0798 18 14 7.8135 2.6691 7.8830 19 1 8.7412 3.5874 7.1748 20 1 7.1015 3.4125 8.9532 21 1 8.5863 1.5532 8.4852 22 7 3.7815 2.1477 1.6223 23 1 -0.3634 0.5137 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 2.8828 1.0775 -1.9564 27 1 1.2567 1.8015 -1.9563 28 1 2.6605 2.7674 -1.4425 29 1 6.9306 2.1727 2.6959 30 1 5.7247 3.4503 2.9816 31 1 4.1528 3.1203 4.8251 32 1 5.6104 0.8775 8.0127 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000234783135.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:41:38 Heat of formation + Delta-G solvation = -33.660597 kcal Electronic energy + Delta-G solvation = -17368.091835 eV Core-core repulsion = 14332.433276 eV Total energy + Delta-G solvation = -3035.658559 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 242.110 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -45.09150 -38.45762 -36.34135 -35.26134 -32.95536 -32.19295 -31.05154 -29.27996 -26.94688 -25.80661 -24.58429 -23.03821 -21.56567 -20.27481 -17.61496 -17.48681 -16.94394 -16.44272 -15.61814 -15.32417 -14.69668 -14.51852 -14.26631 -13.48677 -13.39416 -12.98180 -12.75938 -12.60605 -12.24282 -11.82962 -11.38034 -11.21902 -11.12688 -11.03114 -10.92660 -10.80333 -10.53935 -10.17269 -9.94477 -9.69413 -9.08997 -8.67413 -8.27202 -6.09722 -4.30274 1.65236 2.58394 3.23751 3.30828 3.33048 3.35136 3.44297 4.10894 4.32553 4.57333 4.81083 4.97031 5.13883 5.18127 5.26054 5.35963 5.50593 5.55509 5.64763 5.84532 5.96996 6.00324 6.11231 6.28952 6.43755 6.58525 6.96196 7.51969 7.72898 7.99573 8.64050 8.72102 9.29245 9.47579 10.94672 Molecular weight = 242.11amu Principal moments of inertia in cm(-1) A = 0.047737 B = 0.004974 C = 0.004749 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 586.411710 B = 5628.354662 C = 5894.467478 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.375 6.375 3 C 0.183 3.817 4 H 0.092 0.908 5 C -0.166 4.166 6 C 0.158 3.842 7 N -0.374 5.374 8 O 0.070 5.930 9 C 0.216 3.784 10 C -0.062 4.062 11 C 0.236 3.764 12 H 0.062 0.938 13 O -0.559 6.559 14 C -0.576 4.576 15 H 0.063 0.937 16 C 0.081 3.919 17 N -0.856 5.856 18 Si 0.894 3.106 19 H -0.271 1.271 20 H -0.282 1.282 21 H -0.282 1.282 22 N -0.482 5.482 23 H 0.046 0.954 24 H 0.043 0.957 25 H 0.089 0.911 26 H 0.069 0.931 27 H 0.069 0.931 28 H 0.071 0.929 29 H 0.099 0.901 30 H 0.101 0.899 31 H 0.349 0.651 32 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.107 2.402 -12.883 14.458 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.293 6.293 3 C 0.124 3.876 4 H 0.110 0.890 5 C -0.225 4.225 6 C -0.115 4.115 7 N -0.083 5.083 8 O 0.011 5.989 9 C -0.003 4.003 10 C -0.101 4.101 11 C 0.177 3.823 12 H 0.079 0.921 13 O -0.361 6.361 14 C -0.614 4.614 15 H 0.081 0.919 16 C -0.126 4.126 17 N -0.491 5.491 18 Si 0.721 3.279 19 H -0.195 1.195 20 H -0.208 1.208 21 H -0.208 1.208 22 N -0.216 5.216 23 H 0.065 0.935 24 H 0.062 0.938 25 H 0.108 0.892 26 H 0.088 0.912 27 H 0.088 0.912 28 H 0.090 0.910 29 H 0.118 0.882 30 H 0.119 0.881 31 H 0.193 0.807 32 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -6.606 1.050 -13.276 14.866 hybrid contribution 0.668 1.090 0.857 1.539 sum -5.938 2.140 -12.419 13.931 Atomic orbital electron populations 1.22856 0.80343 1.03165 1.00216 1.88002 1.20064 1.26263 1.94988 1.19936 0.87174 0.86016 0.94502 0.89049 1.22232 1.03040 1.02208 0.94971 1.25356 0.98656 0.90202 0.97288 1.74557 0.97508 1.22313 1.13928 1.85289 1.35021 1.38272 1.40285 1.29304 0.93039 0.84425 0.93548 1.21562 0.95322 1.00040 0.93209 1.19425 0.82365 0.96157 0.84358 0.92055 1.86609 1.32787 1.25934 1.90791 1.21560 1.15929 1.30098 0.93768 0.91910 1.25044 0.95009 0.94117 0.98477 1.70096 1.31808 1.31059 1.16125 0.86531 0.81236 0.78998 0.81120 1.19529 1.20836 1.20814 1.71840 1.08835 1.27902 1.13020 0.93515 0.93804 0.89240 0.91226 0.91194 0.90976 0.88221 0.88054 0.80670 0.92810 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 10.82 101.05 1.09 1.41 16 2 O -0.38 -5.63 10.33 -35.23 -0.36 -6.00 16 3 C 0.18 2.65 3.27 -27.88 -0.09 2.56 16 4 H 0.09 1.19 7.79 -51.93 -0.40 0.79 16 5 C -0.17 -1.89 9.51 37.16 0.35 -1.53 16 6 C 0.16 2.93 7.10 -156.37 -1.11 1.82 16 7 N -0.37 -7.39 12.16 30.90 0.38 -7.02 16 8 O 0.07 1.38 11.31 18.11 0.20 1.59 16 9 C 0.22 4.21 7.54 -13.06 -0.10 4.12 16 10 C -0.06 -1.16 5.46 -27.88 -0.15 -1.31 16 11 C 0.24 5.67 2.81 -27.89 -0.08 5.60 16 12 H 0.06 1.65 8.14 -51.93 -0.42 1.23 16 13 O -0.56 -14.10 12.48 -35.23 -0.44 -14.53 16 14 C -0.58 -14.78 8.76 -34.44 -0.30 -15.08 16 15 H 0.06 1.53 7.74 -52.49 -0.41 1.12 16 16 C 0.08 2.16 5.40 -17.82 -0.10 2.07 16 17 N -0.86 -24.71 12.84 55.43 0.71 -24.00 16 18 Si 0.89 20.30 29.54 -169.99 -5.02 15.28 16 19 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 20 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 21 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 22 N -0.48 -9.43 11.55 -9.87 -0.11 -9.54 16 23 H 0.05 0.45 8.09 -51.93 -0.42 0.03 16 24 H 0.04 0.35 7.87 -51.93 -0.41 -0.06 16 25 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 26 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 27 H 0.07 0.61 7.87 -51.93 -0.41 0.20 16 28 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 29 H 0.10 1.66 8.14 -51.93 -0.42 1.24 16 30 H 0.10 1.74 8.14 -51.93 -0.42 1.32 16 31 H 0.35 7.76 9.04 45.56 0.41 8.17 16 32 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 LS Contribution 287.75 15.07 4.34 4.34 Total: -1.00 -31.74 287.75 -4.10 -35.84 By element: Atomic # 1 Polarization: 7.72 SS G_CDS: -3.31 Total: 4.41 kcal Atomic # 6 Polarization: 0.12 SS G_CDS: -0.48 Total: -0.36 kcal Atomic # 7 Polarization: -41.53 SS G_CDS: 0.97 Total: -40.56 kcal Atomic # 8 Polarization: -18.34 SS G_CDS: -0.60 Total: -18.94 kcal Atomic # 14 Polarization: 20.30 SS G_CDS: -5.02 Total: 15.28 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -31.74 -4.10 -35.84 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000234783135.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.183 kcal (2) G-P(sol) polarization free energy of solvation -31.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.561 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.844 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.661 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds