Wall clock time and date at job start Mon Mar 30 2020 03:41:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42890 * 1 3 3 C 1.42902 * 113.99951 * 2 1 4 4 H 1.09000 * 109.47084 * 30.00185 * 3 2 1 5 5 C 1.53001 * 109.47225 * 270.00117 * 3 2 1 6 6 C 1.50700 * 109.47361 * 149.99926 * 3 2 1 7 7 N 1.29954 * 126.28654 * 45.02928 * 6 3 2 8 8 O 1.21293 * 110.25286 * 180.02562 * 7 6 3 9 9 C 1.33642 * 109.81058 * 359.97438 * 8 7 6 10 10 C 1.50698 * 126.55339 * 180.02562 * 9 8 7 11 11 C 1.53001 * 109.47431 * 269.97717 * 10 9 8 12 12 H 1.08997 * 109.47009 * 54.99606 * 11 10 9 13 13 O 1.42904 * 109.46823 * 294.99890 * 11 10 9 14 14 C 1.50693 * 109.47337 * 175.00004 * 11 10 9 15 15 H 1.08000 * 120.00056 * 359.97438 * 14 11 10 16 16 C 1.37884 * 119.99972 * 179.97438 * 14 11 10 17 17 N 1.31513 * 119.99518 * 359.97438 * 16 14 11 18 18 Si 1.86801 * 120.00190 * 179.97438 * 16 14 11 19 19 H 1.48506 * 109.46984 * 359.97438 * 18 16 14 20 20 H 1.48492 * 109.46981 * 119.99863 * 18 16 14 21 21 H 1.48499 * 109.46961 * 240.00144 * 18 16 14 22 22 N 1.31130 * 106.90015 * 0.02562 * 9 8 7 23 23 H 1.09000 * 109.47707 * 299.99528 * 1 2 3 24 24 H 1.09001 * 109.47338 * 60.00134 * 1 2 3 25 25 H 1.09002 * 109.47141 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47145 * 300.00030 * 5 3 2 27 27 H 1.08998 * 109.47160 * 60.00027 * 5 3 2 28 28 H 1.09003 * 109.47390 * 179.97438 * 5 3 2 29 29 H 1.09000 * 109.46935 * 29.97313 * 10 9 8 30 30 H 1.08997 * 109.47416 * 149.97136 * 10 9 8 31 31 H 0.96703 * 113.99943 * 299.99906 * 13 11 10 32 32 H 0.97001 * 119.99427 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 1 1.3449 1.9994 0.5139 5 6 2.2175 1.7714 -1.4425 6 6 3.3385 1.2640 0.7104 7 7 4.2664 0.3675 0.5546 8 8 5.2138 0.6151 1.2703 9 6 4.9734 1.7270 1.9716 10 6 5.8957 2.3738 2.9726 11 6 5.6195 1.8019 4.3645 12 1 5.7040 0.7156 4.3343 13 8 4.3002 2.1658 4.7758 14 6 6.6218 2.3567 5.3435 15 1 7.3803 3.0478 5.0066 16 6 6.5706 1.9820 6.6695 17 7 5.6467 1.1408 7.0798 18 14 7.8135 2.6691 7.8830 19 1 8.7412 3.5874 7.1748 20 1 7.1015 3.4125 8.9532 21 1 8.5863 1.5532 8.4852 22 7 3.7815 2.1477 1.6223 23 1 -0.3634 0.5137 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 2.8828 1.0775 -1.9564 27 1 1.2567 1.8015 -1.9563 28 1 2.6605 2.7674 -1.4425 29 1 6.9306 2.1727 2.6959 30 1 5.7247 3.4503 2.9816 31 1 4.1528 3.1203 4.8251 32 1 5.6104 0.8775 8.0127 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000234783135.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:41:38 Heat of formation + Delta-G solvation = -59.771106 kcal Electronic energy + Delta-G solvation = -17369.224072 eV Core-core repulsion = 14332.433276 eV Total energy + Delta-G solvation = -3036.790795 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 242.110 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -46.58530 -39.50758 -38.18863 -36.72906 -34.48095 -34.19957 -32.23409 -30.93596 -27.83505 -27.66105 -25.79312 -24.59550 -23.23237 -21.71408 -19.30272 -19.09001 -18.45361 -17.59675 -16.82761 -16.64712 -16.39324 -16.24757 -16.00983 -15.03689 -14.67157 -14.40363 -13.88655 -13.70860 -13.51156 -13.28536 -12.88632 -12.82548 -12.72057 -12.55225 -12.44599 -12.21107 -11.99123 -11.95647 -11.43252 -10.94855 -10.80526 -10.71113 -10.16895 -8.12768 -6.39202 0.14370 1.13982 1.46247 1.48285 1.60029 1.87303 2.23597 2.43786 2.91764 3.15659 3.22865 3.73614 3.95397 4.08986 4.27089 4.38758 4.41465 4.48258 4.50541 4.58603 4.64668 4.78034 4.80417 4.92637 5.02641 5.10441 5.57001 5.70866 6.00471 6.01489 6.72966 7.14628 7.35018 7.53569 8.92840 Molecular weight = 242.11amu Principal moments of inertia in cm(-1) A = 0.047737 B = 0.004974 C = 0.004749 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 586.411710 B = 5628.354662 C = 5894.467478 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.406 6.406 3 C 0.178 3.822 4 H 0.105 0.895 5 C -0.157 4.157 6 C 0.158 3.842 7 N -0.393 5.393 8 O 0.059 5.941 9 C 0.210 3.790 10 C -0.046 4.046 11 C 0.235 3.765 12 H 0.021 0.979 13 O -0.579 6.579 14 C -0.579 4.579 15 H 0.080 0.920 16 C 0.024 3.976 17 N -0.904 5.904 18 Si 0.965 3.035 19 H -0.254 1.254 20 H -0.283 1.283 21 H -0.284 1.284 22 N -0.492 5.492 23 H 0.048 0.952 24 H 0.071 0.929 25 H 0.100 0.900 26 H 0.056 0.944 27 H 0.100 0.900 28 H 0.078 0.922 29 H 0.123 0.877 30 H 0.123 0.877 31 H 0.361 0.639 32 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.066 3.836 -13.777 15.535 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.325 6.325 3 C 0.119 3.881 4 H 0.123 0.877 5 C -0.215 4.215 6 C -0.116 4.116 7 N -0.105 5.105 8 O 0.003 5.997 9 C -0.009 4.009 10 C -0.085 4.085 11 C 0.176 3.824 12 H 0.039 0.961 13 O -0.384 6.384 14 C -0.617 4.617 15 H 0.098 0.902 16 C -0.178 4.178 17 N -0.541 5.541 18 Si 0.790 3.210 19 H -0.178 1.178 20 H -0.209 1.209 21 H -0.210 1.210 22 N -0.226 5.226 23 H 0.067 0.933 24 H 0.089 0.911 25 H 0.118 0.882 26 H 0.075 0.925 27 H 0.119 0.881 28 H 0.097 0.903 29 H 0.141 0.859 30 H 0.141 0.859 31 H 0.207 0.793 32 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -6.543 2.501 -14.184 15.820 hybrid contribution 0.564 0.611 1.093 1.374 sum -5.979 3.112 -13.091 14.724 Atomic orbital electron populations 1.23112 0.78016 1.04436 1.01661 1.87954 1.22649 1.26655 1.95240 1.20273 0.85492 0.86377 0.96007 0.87712 1.22191 1.04565 1.01895 0.92865 1.26210 0.99811 0.89091 0.96486 1.74545 0.98021 1.23163 1.14733 1.85266 1.35371 1.38435 1.40599 1.29420 0.93293 0.84431 0.93765 1.21335 0.96509 1.00750 0.89904 1.19232 0.81789 0.94181 0.87219 0.96137 1.86553 1.33377 1.27110 1.91312 1.22004 1.16103 1.29506 0.94066 0.90232 1.25952 0.96786 0.94373 1.00729 1.70251 1.34285 1.33177 1.16422 0.85419 0.78806 0.78255 0.78528 1.17781 1.20948 1.21026 1.71851 1.08811 1.28535 1.13398 0.93310 0.91060 0.88178 0.92500 0.88082 0.90340 0.85902 0.85853 0.79334 0.93047 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.43 10.82 113.37 1.23 1.65 16 2 O -0.41 -11.71 10.33 -148.98 -1.54 -13.25 16 3 C 0.18 4.89 3.27 29.85 0.10 4.99 16 4 H 0.11 2.53 7.79 -2.39 -0.02 2.51 16 5 C -0.16 -3.21 9.51 71.98 0.68 -2.53 16 6 C 0.16 5.74 7.10 138.46 0.98 6.72 16 7 N -0.39 -15.57 12.16 -60.32 -0.73 -16.30 16 8 O 0.06 2.34 11.31 74.85 0.85 3.19 16 9 C 0.21 8.11 7.54 88.38 0.67 8.78 16 10 C -0.05 -1.67 5.46 29.85 0.16 -1.51 16 11 C 0.23 11.32 2.81 29.85 0.08 11.41 16 12 H 0.02 1.16 8.14 -2.39 -0.02 1.14 16 13 O -0.58 -29.46 12.48 -148.98 -1.86 -31.32 16 14 C -0.58 -29.25 8.76 25.60 0.22 -29.03 16 15 H 0.08 3.68 7.74 -2.91 -0.02 3.66 16 16 C 0.02 1.28 5.40 84.66 0.46 1.74 16 17 N -0.90 -53.10 12.84 21.45 0.28 -52.83 16 18 Si 0.97 41.29 29.54 68.60 2.03 43.32 16 19 H -0.25 -10.10 7.11 99.48 0.71 -9.39 16 20 H -0.28 -12.09 7.11 99.48 0.71 -11.38 16 21 H -0.28 -12.16 7.11 99.48 0.71 -11.45 16 22 N -0.49 -18.89 11.55 -303.19 -3.50 -22.39 16 23 H 0.05 0.87 8.09 -2.39 -0.02 0.85 16 24 H 0.07 0.91 7.87 -2.39 -0.02 0.89 16 25 H 0.10 1.59 8.14 -2.39 -0.02 1.57 16 26 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 27 H 0.10 1.42 7.87 -2.39 -0.02 1.40 16 28 H 0.08 1.49 8.14 -2.39 -0.02 1.48 16 29 H 0.12 3.87 8.14 -2.39 -0.02 3.85 16 30 H 0.12 3.95 8.14 -2.39 -0.02 3.93 16 31 H 0.36 15.96 9.04 -74.06 -0.67 15.29 16 32 H 0.26 14.53 8.31 -92.71 -0.77 13.76 16 Total: -1.00 -68.53 287.75 0.57 -67.96 By element: Atomic # 1 Polarization: 18.94 SS G_CDS: 0.47 Total: 19.40 kcal Atomic # 6 Polarization: -2.36 SS G_CDS: 4.59 Total: 2.22 kcal Atomic # 7 Polarization: -87.56 SS G_CDS: -3.96 Total: -91.52 kcal Atomic # 8 Polarization: -38.83 SS G_CDS: -2.55 Total: -41.38 kcal Atomic # 14 Polarization: 41.29 SS G_CDS: 2.03 Total: 43.32 kcal Total: -68.53 0.57 -67.96 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000234783135.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.188 kcal (2) G-P(sol) polarization free energy of solvation -68.526 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.337 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.566 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.960 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.771 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds