Wall clock time and date at job start Mon Mar 30 2020 03:33:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42898 * 110.63779 * 2 1 4 4 C 1.55154 * 110.72058 * 123.14074 * 2 1 3 5 5 C 1.54908 * 101.58289 * 154.04311 * 4 2 1 6 6 N 1.47425 * 104.92961 * 322.93718 * 5 4 2 7 7 C 1.34774 * 125.65138 * 204.15299 * 6 5 4 8 8 O 1.21440 * 119.99952 * 180.02562 * 7 6 5 9 9 C 1.48834 * 119.99889 * 0.02597 * 7 6 5 10 10 O 1.21498 * 119.99809 * 359.97438 * 9 7 6 11 11 N 1.34779 * 120.00134 * 179.97438 * 9 7 6 12 12 C 1.36117 * 120.00126 * 179.97438 * 11 9 7 13 13 H 1.08002 * 119.99548 * 0.02562 * 12 11 9 14 14 C 1.39583 * 120.00126 * 180.02562 * 12 11 9 15 15 N 1.31017 * 120.00031 * 359.97438 * 14 12 11 16 16 Si 1.86801 * 120.00134 * 180.02562 * 14 12 11 17 17 H 1.48500 * 109.47003 * 59.99341 * 16 14 12 18 18 H 1.48491 * 109.46984 * 179.97438 * 16 14 12 19 19 H 1.48506 * 109.46625 * 299.99813 * 16 14 12 20 20 C 1.47290 * 108.55742 * 24.15407 * 6 5 4 21 21 H 1.08999 * 109.47394 * 296.85773 * 1 2 3 22 22 H 1.09001 * 109.47080 * 56.85739 * 1 2 3 23 23 H 1.08999 * 109.46882 * 176.85553 * 1 2 3 24 24 H 0.96700 * 114.00520 * 303.13804 * 3 2 1 25 25 H 1.09008 * 111.00345 * 35.96781 * 4 2 1 26 26 H 1.09000 * 111.03743 * 272.13748 * 4 2 1 27 27 H 1.09002 * 110.36632 * 81.83114 * 5 4 2 28 28 H 1.08995 * 110.36781 * 204.04351 * 5 4 2 29 29 H 0.96998 * 119.99762 * 0.02562 * 11 9 7 30 30 H 0.96992 * 120.00021 * 179.97438 * 15 14 12 31 31 H 1.09004 * 109.85762 * 239.50064 * 20 6 5 32 32 H 1.08995 * 110.00297 * 118.43011 * 20 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0337 1.3373 0.0000 4 6 2.0789 -0.7934 1.2151 5 6 3.4652 -1.2446 0.6914 6 7 3.2516 -1.5489 -0.7353 7 6 4.0034 -2.3816 -1.4820 8 8 3.7340 -2.5574 -2.6530 9 6 5.1639 -3.0857 -0.8715 10 8 5.4336 -2.9095 0.3000 11 7 5.9155 -3.9189 -1.6181 12 6 6.9771 -4.5625 -1.0599 13 1 7.2168 -4.4057 -0.0185 14 6 7.7558 -5.4249 -1.8332 15 7 7.4646 -5.6154 -3.0964 16 14 9.2122 -6.3087 -1.0669 17 1 8.7405 -7.1597 0.0548 18 1 9.8694 -7.1598 -2.0910 19 1 10.1842 -5.3093 -0.5552 20 6 2.0799 -0.7906 -1.2059 21 1 -0.3634 0.4643 0.9168 22 1 -0.3633 0.5619 -0.8605 23 1 -0.3633 -1.0261 -0.0564 24 1 1.7204 1.8756 -0.7397 25 1 1.4468 -1.6529 1.4384 26 1 2.1819 -0.1495 2.0886 27 1 4.1929 -0.4409 0.8030 28 1 3.8001 -2.1352 1.2231 29 1 5.7003 -4.0593 -2.5534 30 1 8.0060 -6.2144 -3.6338 31 1 1.3191 -1.4773 -1.5771 32 1 2.3750 -0.1017 -1.9974 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000235410336.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:33:42 Heat of formation + Delta-G solvation = -115.540308 kcal Electronic energy + Delta-G solvation = -17613.656567 eV Core-core repulsion = 14574.447437 eV Total energy + Delta-G solvation = -3039.209129 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 242.110 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.05369 -38.50742 -36.97123 -35.33995 -34.11868 -31.68780 -31.28636 -29.48628 -27.15185 -25.55328 -23.37986 -21.78868 -20.48547 -18.97376 -18.12674 -17.22779 -16.30456 -15.96599 -15.46960 -14.85760 -14.64319 -14.26386 -14.01168 -13.74855 -13.41239 -13.04815 -12.69761 -12.45199 -12.30245 -11.89645 -11.78322 -11.60086 -11.22637 -11.15407 -10.74399 -10.53958 -10.40496 -10.30902 -10.07867 -9.69856 -8.34451 -8.21649 -8.10640 -6.66216 -3.98682 2.45323 3.12755 3.17540 3.17847 3.27771 3.96221 4.05443 4.26539 4.39633 4.63083 4.73644 4.93898 5.18634 5.22121 5.40112 5.43750 5.58418 5.70551 5.77834 5.86850 5.93793 6.03764 6.28177 6.35807 6.67297 7.31562 7.50988 7.73187 7.83690 8.30299 8.59024 8.96358 9.32442 9.85650 10.48699 Molecular weight = 242.11amu Principal moments of inertia in cm(-1) A = 0.055574 B = 0.005200 C = 0.004918 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 503.711230 B = 5383.490802 C = 5692.074758 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.113 3.887 3 O -0.550 6.550 4 C -0.124 4.124 5 C 0.108 3.892 6 N -0.600 5.600 7 C 0.527 3.473 8 O -0.549 6.549 9 C 0.398 3.602 10 O -0.591 6.591 11 N -0.499 5.499 12 C -0.306 4.306 13 H 0.112 0.888 14 C 0.031 3.969 15 N -0.870 5.870 16 Si 0.940 3.060 17 H -0.269 1.269 18 H -0.281 1.281 19 H -0.269 1.269 20 C 0.085 3.915 21 H 0.068 0.932 22 H 0.061 0.939 23 H 0.070 0.930 24 H 0.376 0.624 25 H 0.087 0.913 26 H 0.090 0.910 27 H 0.069 0.931 28 H 0.108 0.892 29 H 0.404 0.596 30 H 0.281 0.719 31 H 0.073 0.927 32 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.150 8.635 4.653 14.850 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.072 3.928 3 O -0.355 6.355 4 C -0.162 4.162 5 C -0.014 4.014 6 N -0.335 5.335 7 C 0.314 3.686 8 O -0.426 6.426 9 C 0.183 3.817 10 O -0.479 6.479 11 N -0.133 5.133 12 C -0.436 4.436 13 H 0.130 0.870 14 C -0.176 4.176 15 N -0.508 5.508 16 Si 0.766 3.234 17 H -0.194 1.194 18 H -0.206 1.206 19 H -0.194 1.194 20 C -0.039 4.039 21 H 0.087 0.913 22 H 0.080 0.920 23 H 0.089 0.911 24 H 0.224 0.776 25 H 0.106 0.894 26 H 0.109 0.891 27 H 0.087 0.913 28 H 0.126 0.874 29 H 0.240 0.760 30 H 0.091 0.909 31 H 0.091 0.909 32 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -10.678 8.254 5.091 14.424 hybrid contribution 0.218 -0.249 -0.916 0.974 sum -10.460 8.006 4.175 13.817 Atomic orbital electron populations 1.22332 0.94249 1.03224 1.02784 1.22193 0.92518 0.82704 0.95372 1.86572 1.74073 1.22535 1.52354 1.22952 0.97304 0.99096 0.96836 1.22532 0.95454 1.02871 0.80573 1.48127 1.29174 1.44059 1.12130 1.20502 0.83684 0.78920 0.85497 1.90686 1.71395 1.64093 1.16436 1.18812 0.87239 0.87909 0.87765 1.90521 1.72846 1.68505 1.16038 1.41539 1.23869 1.34831 1.13076 1.19831 1.04295 1.21476 0.98042 0.86986 1.25585 0.99578 0.97182 0.95217 1.69478 1.39502 1.35238 1.06545 0.85772 0.79956 0.79094 0.78622 1.19383 1.20604 1.19372 1.22675 0.88877 0.95449 0.96867 0.91264 0.92018 0.91060 0.77609 0.89420 0.89124 0.91267 0.87404 0.76026 0.90870 0.90860 0.91277 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.39 8.84 37.16 0.33 -1.07 16 2 C 0.11 1.29 1.28 -88.79 -0.11 1.18 16 3 O -0.55 -6.28 13.10 -35.23 -0.46 -6.74 16 4 C -0.12 -1.53 6.26 -24.58 -0.15 -1.68 16 5 C 0.11 1.82 6.04 -2.53 -0.02 1.80 16 6 N -0.60 -11.30 3.34 -171.04 -0.57 -11.87 16 7 C 0.53 12.16 7.90 -11.88 -0.09 12.07 16 8 O -0.55 -13.54 16.80 5.42 0.09 -13.44 16 9 C 0.40 10.26 7.78 -11.87 -0.09 10.17 16 10 O -0.59 -15.70 13.33 5.37 0.07 -15.63 16 11 N -0.50 -13.56 5.25 -11.59 -0.06 -13.62 16 12 C -0.31 -8.47 9.67 -15.15 -0.15 -8.62 16 13 H 0.11 3.14 7.15 -52.49 -0.38 2.77 16 14 C 0.03 0.82 5.51 -17.40 -0.10 0.72 16 15 N -0.87 -23.47 13.03 55.53 0.72 -22.74 16 16 Si 0.94 20.14 29.56 -169.99 -5.02 15.12 16 17 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 18 H -0.28 -5.85 7.11 56.52 0.40 -5.45 16 19 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 20 C 0.08 1.23 6.25 -2.92 -0.02 1.22 16 21 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 22 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 23 H 0.07 0.58 8.07 -51.93 -0.42 0.16 16 24 H 0.38 2.76 9.07 45.56 0.41 3.17 16 25 H 0.09 0.96 8.05 -51.92 -0.42 0.55 16 26 H 0.09 1.01 8.14 -51.93 -0.42 0.58 16 27 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 28 H 0.11 2.03 6.14 -51.93 -0.32 1.71 16 29 H 0.40 11.11 7.35 -40.82 -0.30 10.81 16 30 H 0.28 7.04 8.30 -40.82 -0.34 6.70 16 31 H 0.07 1.02 7.78 -51.93 -0.40 0.62 16 32 H 0.07 1.00 8.07 -51.93 -0.42 0.58 16 LS Contribution 277.80 15.07 4.19 4.19 Total: -1.00 -31.92 277.80 -4.51 -36.43 By element: Atomic # 1 Polarization: 15.58 SS G_CDS: -3.07 Total: 12.51 kcal Atomic # 6 Polarization: 16.20 SS G_CDS: -0.40 Total: 15.80 kcal Atomic # 7 Polarization: -48.33 SS G_CDS: 0.09 Total: -48.24 kcal Atomic # 8 Polarization: -35.52 SS G_CDS: -0.30 Total: -35.82 kcal Atomic # 14 Polarization: 20.14 SS G_CDS: -5.02 Total: 15.12 kcal Total LS contribution 4.19 Total: 4.19 kcal Total: -31.92 -4.51 -36.43 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000235410336.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.107 kcal (2) G-P(sol) polarization free energy of solvation -31.922 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.029 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.511 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.434 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds