Wall clock time and date at job start Mon Mar 30 2020 03:33:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42898 * 110.63779 * 2 1 4 4 C 1.55154 * 110.72058 * 123.14074 * 2 1 3 5 5 C 1.54908 * 101.58289 * 154.04311 * 4 2 1 6 6 N 1.47425 * 104.92961 * 322.93718 * 5 4 2 7 7 C 1.34774 * 125.65138 * 204.15299 * 6 5 4 8 8 O 1.21440 * 119.99952 * 180.02562 * 7 6 5 9 9 C 1.48834 * 119.99889 * 0.02597 * 7 6 5 10 10 O 1.21498 * 119.99809 * 359.97438 * 9 7 6 11 11 N 1.34779 * 120.00134 * 179.97438 * 9 7 6 12 12 C 1.36117 * 120.00126 * 179.97438 * 11 9 7 13 13 H 1.08002 * 119.99548 * 0.02562 * 12 11 9 14 14 C 1.39583 * 120.00126 * 180.02562 * 12 11 9 15 15 N 1.31017 * 120.00031 * 359.97438 * 14 12 11 16 16 Si 1.86801 * 120.00134 * 180.02562 * 14 12 11 17 17 H 1.48500 * 109.47003 * 59.99341 * 16 14 12 18 18 H 1.48491 * 109.46984 * 179.97438 * 16 14 12 19 19 H 1.48506 * 109.46625 * 299.99813 * 16 14 12 20 20 C 1.47290 * 108.55742 * 24.15407 * 6 5 4 21 21 H 1.08999 * 109.47394 * 296.85773 * 1 2 3 22 22 H 1.09001 * 109.47080 * 56.85739 * 1 2 3 23 23 H 1.08999 * 109.46882 * 176.85553 * 1 2 3 24 24 H 0.96700 * 114.00520 * 303.13804 * 3 2 1 25 25 H 1.09008 * 111.00345 * 35.96781 * 4 2 1 26 26 H 1.09000 * 111.03743 * 272.13748 * 4 2 1 27 27 H 1.09002 * 110.36632 * 81.83114 * 5 4 2 28 28 H 1.08995 * 110.36781 * 204.04351 * 5 4 2 29 29 H 0.96998 * 119.99762 * 0.02562 * 11 9 7 30 30 H 0.96992 * 120.00021 * 179.97438 * 15 14 12 31 31 H 1.09004 * 109.85762 * 239.50064 * 20 6 5 32 32 H 1.08995 * 110.00297 * 118.43011 * 20 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0337 1.3373 0.0000 4 6 2.0789 -0.7934 1.2151 5 6 3.4652 -1.2446 0.6914 6 7 3.2516 -1.5489 -0.7353 7 6 4.0034 -2.3816 -1.4820 8 8 3.7340 -2.5574 -2.6530 9 6 5.1639 -3.0857 -0.8715 10 8 5.4336 -2.9095 0.3000 11 7 5.9155 -3.9189 -1.6181 12 6 6.9771 -4.5625 -1.0599 13 1 7.2168 -4.4057 -0.0185 14 6 7.7558 -5.4249 -1.8332 15 7 7.4646 -5.6154 -3.0964 16 14 9.2122 -6.3087 -1.0669 17 1 8.7405 -7.1597 0.0548 18 1 9.8694 -7.1598 -2.0910 19 1 10.1842 -5.3093 -0.5552 20 6 2.0799 -0.7906 -1.2059 21 1 -0.3634 0.4643 0.9168 22 1 -0.3633 0.5619 -0.8605 23 1 -0.3633 -1.0261 -0.0564 24 1 1.7204 1.8756 -0.7397 25 1 1.4468 -1.6529 1.4384 26 1 2.1819 -0.1495 2.0886 27 1 4.1929 -0.4409 0.8030 28 1 3.8001 -2.1352 1.2231 29 1 5.7003 -4.0593 -2.5534 30 1 8.0060 -6.2144 -3.6338 31 1 1.3191 -1.4773 -1.5771 32 1 2.3750 -0.1017 -1.9974 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000235410336.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:33:42 Heat of formation + Delta-G solvation = -142.024650 kcal Electronic energy + Delta-G solvation = -17614.805014 eV Core-core repulsion = 14574.447437 eV Total energy + Delta-G solvation = -3040.357577 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 242.110 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.61993 -40.01308 -38.81783 -36.76135 -35.97999 -33.51640 -32.62645 -30.63295 -28.58027 -27.32206 -24.86222 -23.38973 -21.47199 -20.85038 -20.07589 -18.57444 -17.88335 -17.66875 -16.96881 -16.80318 -15.86217 -15.71972 -15.35137 -15.24897 -15.07599 -14.51165 -14.06327 -13.85291 -13.67175 -13.34405 -12.97246 -12.90491 -12.62893 -12.56407 -12.36903 -12.22942 -12.11943 -11.66004 -11.51546 -11.10291 -10.29407 -10.14071 -9.81078 -8.66678 -6.11711 0.55179 1.39498 1.48499 1.51922 1.65574 2.26640 2.32635 2.98256 3.13347 3.20755 3.45362 3.57897 3.85368 3.96028 4.25414 4.33109 4.52015 4.66399 4.75984 4.85506 4.96501 5.02682 5.15583 5.22193 5.24907 5.28777 5.67003 6.13880 6.29474 6.71083 6.84039 6.93424 7.25680 7.78041 8.49170 Molecular weight = 242.11amu Principal moments of inertia in cm(-1) A = 0.055574 B = 0.005200 C = 0.004918 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 503.711230 B = 5383.490802 C = 5692.074758 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.126 3.874 3 O -0.563 6.563 4 C -0.114 4.114 5 C 0.101 3.899 6 N -0.592 5.592 7 C 0.525 3.475 8 O -0.572 6.572 9 C 0.392 3.608 10 O -0.604 6.604 11 N -0.511 5.511 12 C -0.345 4.345 13 H 0.100 0.900 14 C -0.005 4.005 15 N -0.897 5.897 16 Si 1.012 2.988 17 H -0.263 1.263 18 H -0.267 1.267 19 H -0.264 1.264 20 C 0.074 3.926 21 H 0.082 0.918 22 H 0.078 0.922 23 H 0.075 0.925 24 H 0.395 0.605 25 H 0.105 0.895 26 H 0.109 0.891 27 H 0.059 0.941 28 H 0.084 0.916 29 H 0.399 0.601 30 H 0.289 0.711 31 H 0.083 0.917 32 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.241 9.291 5.401 16.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.085 3.915 3 O -0.372 6.372 4 C -0.152 4.152 5 C -0.021 4.021 6 N -0.326 5.326 7 C 0.311 3.689 8 O -0.452 6.452 9 C 0.177 3.823 10 O -0.494 6.494 11 N -0.145 5.145 12 C -0.475 4.475 13 H 0.118 0.882 14 C -0.209 4.209 15 N -0.535 5.535 16 Si 0.832 3.168 17 H -0.187 1.187 18 H -0.191 1.191 19 H -0.189 1.189 20 C -0.048 4.048 21 H 0.101 0.899 22 H 0.097 0.903 23 H 0.094 0.906 24 H 0.245 0.755 25 H 0.123 0.877 26 H 0.127 0.873 27 H 0.077 0.923 28 H 0.102 0.898 29 H 0.234 0.766 30 H 0.099 0.901 31 H 0.101 0.899 32 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -11.810 8.955 5.851 15.934 hybrid contribution 0.495 -0.346 -1.133 1.284 sum -11.315 8.609 4.718 14.980 Atomic orbital electron populations 1.22282 0.91067 1.04064 1.04370 1.22132 0.94460 0.82200 0.92751 1.86539 1.74708 1.22477 1.53490 1.22966 0.94276 1.00232 0.97732 1.22606 0.98547 1.01497 0.79439 1.48229 1.29165 1.42390 1.12778 1.19945 0.83663 0.79913 0.85426 1.90663 1.72035 1.65387 1.17117 1.19426 0.87759 0.87470 0.87673 1.90500 1.73475 1.68805 1.16588 1.41642 1.24392 1.35579 1.12887 1.19960 1.05827 1.23603 0.98075 0.88189 1.26566 1.01841 0.96971 0.95502 1.69550 1.40643 1.35592 1.07690 0.84729 0.76084 0.77884 0.78065 1.18741 1.19082 1.18871 1.23119 0.87304 0.95629 0.98755 0.89888 0.90260 0.90645 0.75470 0.87707 0.87307 0.92283 0.89809 0.76620 0.90070 0.89860 0.91066 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.00 8.84 71.98 0.64 -1.36 16 2 C 0.13 2.50 1.28 -9.61 -0.01 2.49 16 3 O -0.56 -11.21 13.10 -148.98 -1.95 -13.16 16 4 C -0.11 -2.54 6.26 31.98 0.20 -2.34 16 5 C 0.10 3.38 6.04 86.85 0.52 3.90 16 6 N -0.59 -22.23 3.34 -813.38 -2.71 -24.94 16 7 C 0.52 24.78 7.90 87.08 0.69 25.46 16 8 O -0.57 -28.80 16.80 -3.53 -0.06 -28.86 16 9 C 0.39 20.93 7.78 87.08 0.68 21.61 16 10 O -0.60 -33.28 13.33 -3.71 -0.05 -33.33 16 11 N -0.51 -28.90 5.25 -308.87 -1.62 -30.52 16 12 C -0.35 -19.70 9.67 84.35 0.82 -18.88 16 13 H 0.10 5.82 7.15 -2.91 -0.02 5.79 16 14 C 0.00 -0.24 5.51 85.14 0.47 0.23 16 15 N -0.90 -48.91 13.03 21.76 0.28 -48.62 16 16 Si 1.01 41.08 29.56 68.60 2.03 43.11 16 17 H -0.26 -10.37 7.11 99.48 0.71 -9.66 16 18 H -0.27 -10.13 7.11 99.48 0.71 -9.42 16 19 H -0.26 -10.48 7.11 99.48 0.71 -9.77 16 20 C 0.07 2.02 6.25 86.68 0.54 2.57 16 21 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 22 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 23 H 0.07 0.92 8.07 -2.39 -0.02 0.90 16 24 H 0.39 4.54 9.07 -74.06 -0.67 3.86 16 25 H 0.10 1.99 8.05 -2.38 -0.02 1.97 16 26 H 0.11 2.08 8.14 -2.39 -0.02 2.06 16 27 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 28 H 0.08 3.22 6.14 -2.39 -0.01 3.20 16 29 H 0.40 22.91 7.35 -92.71 -0.68 22.23 16 30 H 0.29 14.43 8.30 -92.71 -0.77 13.66 16 31 H 0.08 2.15 7.78 -2.38 -0.02 2.13 16 32 H 0.07 1.94 8.07 -2.39 -0.02 1.92 16 Total: -1.00 -70.38 277.80 0.27 -70.12 By element: Atomic # 1 Polarization: 32.72 SS G_CDS: -0.19 Total: 32.53 kcal Atomic # 6 Polarization: 29.13 SS G_CDS: 4.54 Total: 33.67 kcal Atomic # 7 Polarization: -100.03 SS G_CDS: -4.05 Total: -104.08 kcal Atomic # 8 Polarization: -73.29 SS G_CDS: -2.06 Total: -75.35 kcal Atomic # 14 Polarization: 41.08 SS G_CDS: 2.03 Total: 43.11 kcal Total: -70.38 0.27 -70.12 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000235410336.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.909 kcal (2) G-P(sol) polarization free energy of solvation -70.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.292 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.268 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.116 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.025 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds