Wall clock time and date at job start Mon Mar 30 2020 03:48:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86803 * 120.00067 * 2 1 4 4 H 1.48500 * 109.46973 * 270.00014 * 3 2 1 5 5 H 1.48493 * 109.47274 * 29.99952 * 3 2 1 6 6 H 1.48500 * 109.47089 * 150.00192 * 3 2 1 7 7 C 1.37882 * 120.00097 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00089 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99762 * 359.97438 * 7 2 1 10 10 N 1.46490 * 109.47069 * 180.02562 * 9 7 2 11 11 C 1.34777 * 120.00004 * 179.97438 * 10 9 7 12 12 S 1.71198 * 120.00059 * 0.02562 * 11 10 9 13 13 N 1.34786 * 119.99934 * 180.27556 * 11 10 9 14 14 C 1.44574 * 118.64130 * 359.46238 * 13 11 10 15 15 C 1.54306 * 109.91288 * 270.85002 * 14 13 11 16 16 C 1.47088 * 110.29596 * 288.76574 * 15 14 13 17 17 C 1.52568 * 114.33142 * 62.72721 * 16 15 14 18 18 C 1.50887 * 109.35459 * 274.98251 * 17 16 15 19 19 C 1.47602 * 118.64374 * 179.72459 * 13 11 10 20 20 H 0.97000 * 119.99613 * 0.02562 * 1 2 3 21 21 H 1.09007 * 109.46569 * 60.00379 * 9 7 2 22 22 H 1.08997 * 109.47052 * 300.00624 * 9 7 2 23 23 H 0.97000 * 120.00260 * 0.02562 * 10 9 7 24 24 H 1.09004 * 109.45169 * 30.76598 * 14 13 11 25 25 H 1.09004 * 109.44982 * 150.68136 * 14 13 11 26 26 H 1.08998 * 109.40679 * 168.46925 * 15 14 13 27 27 H 1.09002 * 109.27952 * 48.97448 * 15 14 13 28 28 H 1.09005 * 108.51050 * 301.47014 * 16 15 14 29 29 H 1.08995 * 108.51685 * 183.98277 * 16 15 14 30 30 H 1.08995 * 109.49098 * 155.02376 * 17 16 15 31 31 H 1.09000 * 109.49116 * 34.94482 * 17 16 15 32 32 H 1.09005 * 109.36364 * 331.69792 * 18 17 16 33 33 H 1.08994 * 109.37058 * 212.07621 * 18 17 16 34 34 H 1.08995 * 108.95251 * 258.56058 * 19 13 11 35 35 H 1.09007 * 108.94541 * 17.27660 * 19 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5468 1.4402 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 7 2.2030 -3.6126 -0.0005 11 6 1.7537 -4.8833 0.0000 12 16 0.0705 -5.1961 0.0000 13 7 2.6296 -5.9078 0.0056 14 6 4.0443 -5.6100 -0.0009 15 6 4.5499 -5.4923 -1.4541 16 6 4.5768 -6.8165 -2.0937 17 6 3.2094 -7.4814 -2.2204 18 6 2.8873 -8.2105 -0.9393 19 6 2.1047 -7.2873 0.0122 20 1 -0.4849 0.8401 -0.0004 21 1 0.6241 -2.5566 -0.8904 22 1 0.6247 -2.5570 0.8896 23 1 3.1566 -3.4354 -0.0002 24 1 4.2191 -4.6669 0.5168 25 1 4.5855 -6.4082 0.5072 26 1 5.5550 -5.0708 -1.4548 27 1 3.8852 -4.8346 -2.0142 28 1 5.2264 -7.4694 -1.5106 29 1 5.0037 -6.7106 -3.0910 30 1 3.2250 -8.1903 -3.0482 31 1 2.4511 -6.7208 -2.4066 32 1 3.8142 -8.5231 -0.4584 33 1 2.2851 -9.0903 -1.1657 34 1 2.1694 -7.6858 1.0247 35 1 1.0589 -7.2696 -0.2946 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000243493347.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:48:43 Heat of formation + Delta-G solvation = 4.842248 kcal Electronic energy + Delta-G solvation = -15874.345642 eV Core-core repulsion = 13418.942657 eV Total energy + Delta-G solvation = -2455.402985 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 242.115 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.95740 -36.66272 -34.17997 -32.92987 -32.31532 -28.19742 -26.67233 -25.59870 -23.24670 -22.17682 -20.59333 -20.19672 -18.08275 -16.81583 -16.16453 -15.51240 -15.11996 -14.73911 -14.48033 -14.03350 -13.65709 -13.30581 -13.26031 -12.76091 -12.43599 -12.15545 -11.64553 -11.15665 -11.13059 -10.95881 -10.84798 -10.84356 -10.54525 -10.46406 -10.33042 -10.30227 -9.52250 -8.76030 -8.07048 -7.09595 -6.59731 -6.21255 -4.31673 2.15969 2.61504 3.20050 3.21571 3.26950 3.28727 4.05813 4.32385 4.52994 4.62566 4.74257 4.85794 5.01694 5.13664 5.20194 5.27342 5.47345 5.59509 5.62676 5.76042 5.86721 5.97717 6.03112 6.12965 6.15035 6.30035 6.67472 6.72941 7.30313 7.43215 7.44410 7.71712 7.87376 8.25343 8.73146 9.33706 10.87217 Molecular weight = 242.11amu Principal moments of inertia in cm(-1) A = 0.031771 B = 0.006408 C = 0.005614 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 881.105609 B = 4368.728435 C = 4986.670925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.875 5.875 2 C 0.069 3.931 3 Si 0.904 3.096 4 H -0.278 1.278 5 H -0.283 1.283 6 H -0.273 1.273 7 C -0.556 4.556 8 H 0.060 0.940 9 C 0.250 3.750 10 N -0.652 5.652 11 C 0.554 3.446 12 S -0.681 6.681 13 N -0.577 5.577 14 C 0.098 3.902 15 C -0.141 4.141 16 C -0.115 4.115 17 C -0.120 4.120 18 C -0.127 4.127 19 C 0.105 3.895 20 H 0.268 0.732 21 H 0.049 0.951 22 H 0.049 0.951 23 H 0.389 0.611 24 H 0.076 0.924 25 H 0.086 0.914 26 H 0.077 0.923 27 H 0.069 0.931 28 H 0.058 0.942 29 H 0.057 0.943 30 H 0.062 0.938 31 H 0.070 0.930 32 H 0.060 0.940 33 H 0.077 0.923 34 H 0.064 0.936 35 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.893 -13.271 -2.107 17.944 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.511 5.511 2 C -0.136 4.136 3 Si 0.731 3.269 4 H -0.204 1.204 5 H -0.208 1.208 6 H -0.198 1.198 7 C -0.594 4.594 8 H 0.078 0.922 9 C 0.130 3.870 10 N -0.276 5.276 11 C 0.192 3.808 12 S -0.553 6.553 13 N -0.290 5.290 14 C -0.028 4.028 15 C -0.180 4.180 16 C -0.152 4.152 17 C -0.157 4.157 18 C -0.165 4.165 19 C -0.018 4.018 20 H 0.078 0.922 21 H 0.067 0.933 22 H 0.067 0.933 23 H 0.226 0.774 24 H 0.094 0.906 25 H 0.104 0.896 26 H 0.095 0.905 27 H 0.088 0.912 28 H 0.076 0.924 29 H 0.076 0.924 30 H 0.081 0.919 31 H 0.089 0.911 32 H 0.079 0.921 33 H 0.096 0.904 34 H 0.083 0.917 35 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 10.641 -13.237 -2.083 17.111 hybrid contribution 1.886 1.227 0.005 2.251 sum 12.527 -12.010 -2.078 17.478 Atomic orbital electron populations 1.69988 1.05989 1.27499 1.47647 1.24899 0.94915 0.99301 0.94460 0.86411 0.79565 0.82636 0.78282 1.20375 1.20815 1.19834 1.21136 0.93066 0.90355 1.54844 0.92166 1.19623 0.87543 0.79681 1.00118 1.46110 1.11752 1.04250 1.65519 1.22302 0.94397 0.82731 0.81351 1.93111 0.94687 1.90665 1.76876 1.46668 1.04210 1.05717 1.72407 1.21625 0.81653 1.02256 0.97314 1.21226 1.02083 0.98564 0.96152 1.20422 0.97533 0.96506 1.00759 1.21090 0.97482 0.99921 0.97254 1.21767 1.00481 0.98301 0.95992 1.22319 1.02226 0.77795 0.99489 0.92217 0.93273 0.93339 0.77393 0.90578 0.89606 0.90492 0.91182 0.92372 0.92388 0.91938 0.91081 0.92095 0.90417 0.91735 0.85783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.48 13.29 55.43 0.74 -24.74 16 2 C 0.07 1.89 5.46 -17.82 -0.10 1.79 16 3 Si 0.90 20.50 29.54 -169.99 -5.02 15.48 16 4 H -0.28 -6.23 7.11 56.52 0.40 -5.82 16 5 H -0.28 -6.40 7.11 56.52 0.40 -5.99 16 6 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 7 C -0.56 -14.71 9.28 -34.44 -0.32 -15.03 16 8 H 0.06 1.49 7.60 -52.49 -0.40 1.09 16 9 C 0.25 6.47 4.88 -5.20 -0.03 6.44 16 10 N -0.65 -13.38 5.38 -63.22 -0.34 -13.72 16 11 C 0.55 10.89 7.64 -86.91 -0.66 10.23 16 12 S -0.68 -16.28 26.84 -107.50 -2.88 -19.17 16 13 N -0.58 -8.46 2.25 -174.91 -0.39 -8.86 16 14 C 0.10 1.11 5.10 -4.39 -0.02 1.09 16 15 C -0.14 -1.48 5.72 -28.88 -0.17 -1.64 16 16 C -0.11 -1.08 5.15 -29.79 -0.15 -1.23 16 17 C -0.12 -1.26 5.51 -28.01 -0.15 -1.42 16 18 C -0.13 -1.24 5.71 -27.30 -0.16 -1.39 16 19 C 0.10 1.36 5.95 -2.94 -0.02 1.35 16 20 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 21 H 0.05 1.42 7.99 -51.93 -0.42 1.01 16 22 H 0.05 1.41 7.99 -51.93 -0.41 0.99 16 23 H 0.39 6.89 5.93 -40.82 -0.24 6.65 16 24 H 0.08 0.88 6.21 -51.93 -0.32 0.56 16 25 H 0.09 0.78 8.06 -51.93 -0.42 0.37 16 26 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 27 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 28 H 0.06 0.47 7.36 -51.93 -0.38 0.09 16 29 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 30 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.07 0.97 7.48 -51.93 -0.39 0.58 16 32 H 0.06 0.51 7.32 -51.93 -0.38 0.13 16 33 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 35 H 0.12 1.97 5.89 -47.10 -0.28 1.69 16 LS Contribution 288.01 15.07 4.34 4.34 Total: -1.00 -31.55 288.01 -10.65 -42.20 By element: Atomic # 1 Polarization: 9.60 SS G_CDS: -5.31 Total: 4.29 kcal Atomic # 6 Polarization: 1.96 SS G_CDS: -1.77 Total: 0.19 kcal Atomic # 7 Polarization: -47.32 SS G_CDS: 0.00 Total: -47.32 kcal Atomic # 14 Polarization: 20.50 SS G_CDS: -5.02 Total: 15.48 kcal Atomic # 16 Polarization: -16.28 SS G_CDS: -2.88 Total: -19.17 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -31.55 -10.65 -42.20 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000243493347.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.039 kcal (2) G-P(sol) polarization free energy of solvation -31.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.197 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.842 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds