Wall clock time and date at job start Mon Mar 30 2020 03:48:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86803 * 120.00067 * 2 1 4 4 H 1.48500 * 109.46973 * 270.00014 * 3 2 1 5 5 H 1.48493 * 109.47274 * 29.99952 * 3 2 1 6 6 H 1.48500 * 109.47089 * 150.00192 * 3 2 1 7 7 C 1.37882 * 120.00097 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00089 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99762 * 359.97438 * 7 2 1 10 10 N 1.46490 * 109.47069 * 180.02562 * 9 7 2 11 11 C 1.34777 * 120.00004 * 179.97438 * 10 9 7 12 12 S 1.71198 * 120.00059 * 0.02562 * 11 10 9 13 13 N 1.34786 * 119.99934 * 180.27556 * 11 10 9 14 14 C 1.44574 * 118.64130 * 359.46238 * 13 11 10 15 15 C 1.54306 * 109.91288 * 270.85002 * 14 13 11 16 16 C 1.47088 * 110.29596 * 288.76574 * 15 14 13 17 17 C 1.52568 * 114.33142 * 62.72721 * 16 15 14 18 18 C 1.50887 * 109.35459 * 274.98251 * 17 16 15 19 19 C 1.47602 * 118.64374 * 179.72459 * 13 11 10 20 20 H 0.97000 * 119.99613 * 0.02562 * 1 2 3 21 21 H 1.09007 * 109.46569 * 60.00379 * 9 7 2 22 22 H 1.08997 * 109.47052 * 300.00624 * 9 7 2 23 23 H 0.97000 * 120.00260 * 0.02562 * 10 9 7 24 24 H 1.09004 * 109.45169 * 30.76598 * 14 13 11 25 25 H 1.09004 * 109.44982 * 150.68136 * 14 13 11 26 26 H 1.08998 * 109.40679 * 168.46925 * 15 14 13 27 27 H 1.09002 * 109.27952 * 48.97448 * 15 14 13 28 28 H 1.09005 * 108.51050 * 301.47014 * 16 15 14 29 29 H 1.08995 * 108.51685 * 183.98277 * 16 15 14 30 30 H 1.08995 * 109.49098 * 155.02376 * 17 16 15 31 31 H 1.09000 * 109.49116 * 34.94482 * 17 16 15 32 32 H 1.09005 * 109.36364 * 331.69792 * 18 17 16 33 33 H 1.08994 * 109.37058 * 212.07621 * 18 17 16 34 34 H 1.08995 * 108.95251 * 258.56058 * 19 13 11 35 35 H 1.09007 * 108.94541 * 17.27660 * 19 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5468 1.4402 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 7 2.2030 -3.6126 -0.0005 11 6 1.7537 -4.8833 0.0000 12 16 0.0705 -5.1961 0.0000 13 7 2.6296 -5.9078 0.0056 14 6 4.0443 -5.6100 -0.0009 15 6 4.5499 -5.4923 -1.4541 16 6 4.5768 -6.8165 -2.0937 17 6 3.2094 -7.4814 -2.2204 18 6 2.8873 -8.2105 -0.9393 19 6 2.1047 -7.2873 0.0122 20 1 -0.4849 0.8401 -0.0004 21 1 0.6241 -2.5566 -0.8904 22 1 0.6247 -2.5570 0.8896 23 1 3.1566 -3.4354 -0.0002 24 1 4.2191 -4.6669 0.5168 25 1 4.5855 -6.4082 0.5072 26 1 5.5550 -5.0708 -1.4548 27 1 3.8852 -4.8346 -2.0142 28 1 5.2264 -7.4694 -1.5106 29 1 5.0037 -6.7106 -3.0910 30 1 3.2250 -8.1903 -3.0482 31 1 2.4511 -6.7208 -2.4066 32 1 3.8142 -8.5231 -0.4584 33 1 2.2851 -9.0903 -1.1657 34 1 2.1694 -7.6858 1.0247 35 1 1.0589 -7.2696 -0.2946 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000243493347.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:48:42 Heat of formation + Delta-G solvation = -14.405543 kcal Electronic energy + Delta-G solvation = -15875.180288 eV Core-core repulsion = 13418.942657 eV Total energy + Delta-G solvation = -2456.237631 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 242.115 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.21380 -38.08937 -35.64325 -34.45900 -33.60276 -29.89616 -28.08343 -26.65369 -24.96906 -23.81866 -21.58228 -21.30202 -19.57629 -18.28713 -18.00525 -16.78940 -16.59200 -16.32169 -15.59197 -15.35389 -15.09920 -14.55769 -14.48162 -14.14503 -13.80743 -13.53879 -12.92441 -12.85196 -12.62798 -12.29225 -12.26141 -12.19941 -11.80853 -11.67988 -11.55398 -11.49814 -11.34663 -10.74169 -9.66698 -8.96354 -8.51273 -8.29294 -6.49540 0.50893 0.99781 1.41931 1.44669 1.55265 1.71666 2.32837 2.58821 3.04313 3.63047 3.78237 3.87007 3.98356 4.14026 4.30765 4.39602 4.62385 4.66134 4.74927 4.86048 4.96292 5.04287 5.14386 5.20514 5.21740 5.23578 5.27375 5.32993 5.43070 5.46907 5.71908 5.83258 5.98152 6.47882 6.70774 7.22531 8.80851 Molecular weight = 242.11amu Principal moments of inertia in cm(-1) A = 0.031771 B = 0.006408 C = 0.005614 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 881.105609 B = 4368.728435 C = 4986.670925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C 0.010 3.990 3 Si 0.984 3.016 4 H -0.271 1.271 5 H -0.284 1.284 6 H -0.255 1.255 7 C -0.565 4.565 8 H 0.082 0.918 9 C 0.277 3.723 10 N -0.649 5.649 11 C 0.573 3.427 12 S -0.775 6.775 13 N -0.549 5.549 14 C 0.086 3.914 15 C -0.136 4.136 16 C -0.115 4.115 17 C -0.122 4.122 18 C -0.115 4.115 19 C 0.097 3.903 20 H 0.270 0.730 21 H 0.006 0.994 22 H 0.007 0.993 23 H 0.407 0.593 24 H 0.078 0.922 25 H 0.127 0.873 26 H 0.105 0.895 27 H 0.036 0.964 28 H 0.086 0.914 29 H 0.064 0.936 30 H 0.077 0.923 31 H 0.028 0.972 32 H 0.092 0.908 33 H 0.091 0.909 34 H 0.083 0.917 35 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.080 -14.064 -1.982 21.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.191 4.191 3 Si 0.807 3.193 4 H -0.196 1.196 5 H -0.209 1.209 6 H -0.178 1.178 7 C -0.603 4.603 8 H 0.100 0.900 9 C 0.155 3.845 10 N -0.276 5.276 11 C 0.207 3.793 12 S -0.648 6.648 13 N -0.259 5.259 14 C -0.039 4.039 15 C -0.174 4.174 16 C -0.152 4.152 17 C -0.160 4.160 18 C -0.153 4.153 19 C -0.025 4.025 20 H 0.079 0.921 21 H 0.024 0.976 22 H 0.025 0.975 23 H 0.247 0.753 24 H 0.096 0.904 25 H 0.145 0.855 26 H 0.124 0.876 27 H 0.055 0.945 28 H 0.105 0.895 29 H 0.083 0.917 30 H 0.095 0.905 31 H 0.047 0.953 32 H 0.111 0.889 33 H 0.110 0.890 34 H 0.101 0.899 35 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 14.908 -14.112 -1.963 20.622 hybrid contribution 0.660 1.323 -0.050 1.479 sum 15.568 -12.789 -2.013 20.248 Atomic orbital electron populations 1.70160 1.08226 1.28689 1.48945 1.26006 0.95716 1.03695 0.93645 0.85166 0.78495 0.77003 0.78612 1.19599 1.20922 1.17848 1.21530 0.94148 0.90386 1.54259 0.89952 1.18892 0.87644 0.81694 0.96255 1.45544 1.11759 1.03445 1.66882 1.21759 0.93101 0.83538 0.80895 1.93272 0.99809 1.91349 1.80387 1.47017 1.05255 1.05172 1.68427 1.22103 0.79060 1.03971 0.98780 1.21220 1.02685 0.98920 0.94623 1.20438 0.96990 0.96107 1.01681 1.21113 0.97191 0.99339 0.98327 1.21748 1.01491 0.97411 0.94667 1.22531 1.01205 0.77219 1.01542 0.92114 0.97555 0.97496 0.75288 0.90418 0.85535 0.87633 0.94535 0.89501 0.91683 0.90468 0.95275 0.88950 0.89022 0.89901 0.89165 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.59 13.29 21.45 0.28 -55.31 16 2 C 0.01 0.56 5.46 84.66 0.46 1.02 16 3 Si 0.98 41.70 29.54 68.60 2.03 43.72 16 4 H -0.27 -11.10 7.11 99.48 0.71 -10.39 16 5 H -0.28 -11.98 7.11 99.48 0.71 -11.27 16 6 H -0.25 -9.96 7.11 99.48 0.71 -9.25 16 7 C -0.57 -30.17 9.28 25.60 0.24 -29.94 16 8 H 0.08 3.93 7.60 -2.91 -0.02 3.91 16 9 C 0.28 15.06 4.88 85.64 0.42 15.47 16 10 N -0.65 -27.18 5.38 -353.92 -1.90 -29.09 16 11 C 0.57 23.12 7.64 179.05 1.37 24.49 16 12 S -0.77 -39.61 26.84 -56.49 -1.52 -41.12 16 13 N -0.55 -15.44 2.25 -707.30 -1.59 -17.03 16 14 C 0.09 1.63 5.10 87.18 0.44 2.08 16 15 C -0.14 -2.39 5.72 29.20 0.17 -2.22 16 16 C -0.11 -1.69 5.15 28.61 0.15 -1.55 16 17 C -0.12 -2.28 5.51 29.76 0.16 -2.11 16 18 C -0.12 -1.85 5.71 30.23 0.17 -1.68 16 19 C 0.10 2.39 5.95 86.49 0.52 2.91 16 20 H 0.27 15.21 8.31 -92.71 -0.77 14.43 16 21 H 0.01 0.40 7.99 -2.38 -0.02 0.38 16 22 H 0.01 0.44 7.99 -2.39 -0.02 0.42 16 23 H 0.41 14.04 5.93 -92.71 -0.55 13.49 16 24 H 0.08 1.53 6.21 -2.38 -0.01 1.51 16 25 H 0.13 1.55 8.06 -2.38 -0.02 1.53 16 26 H 0.11 1.33 8.14 -2.39 -0.02 1.32 16 27 H 0.04 0.90 8.14 -2.39 -0.02 0.88 16 28 H 0.09 0.86 7.36 -2.38 -0.02 0.84 16 29 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 30 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 31 H 0.03 0.79 7.48 -2.39 -0.02 0.77 16 32 H 0.09 0.99 7.32 -2.38 -0.02 0.98 16 33 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 34 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 35 H 0.09 2.95 5.89 -5.45 -0.03 2.92 16 Total: -1.00 -74.63 288.01 1.90 -72.73 By element: Atomic # 1 Polarization: 17.12 SS G_CDS: 0.50 Total: 17.62 kcal Atomic # 6 Polarization: 4.38 SS G_CDS: 4.10 Total: 8.47 kcal Atomic # 7 Polarization: -98.22 SS G_CDS: -3.21 Total: -101.43 kcal Atomic # 14 Polarization: 41.70 SS G_CDS: 2.03 Total: 43.72 kcal Atomic # 16 Polarization: -39.61 SS G_CDS: -1.52 Total: -41.12 kcal Total: -74.63 1.90 -72.73 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000243493347.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.327 kcal (2) G-P(sol) polarization free energy of solvation -74.632 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.305 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.899 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.732 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds