Wall clock time and date at job start Mon Mar 30 2020 03:57:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53042 * 109.45572 * 2 1 4 4 C 1.53195 * 109.30852 * 181.37320 * 3 2 1 5 5 N 1.46924 * 108.77545 * 305.35972 * 4 3 2 6 6 C 1.34778 * 120.63408 * 233.33369 * 5 4 3 7 7 S 1.71200 * 119.99861 * 174.78277 * 6 5 4 8 8 N 1.34775 * 119.99792 * 354.78266 * 6 5 4 9 9 C 1.46501 * 119.99898 * 184.98163 * 8 6 5 10 10 C 1.50694 * 109.47020 * 180.02562 * 9 8 6 11 11 H 1.07997 * 120.00092 * 0.02562 * 10 9 8 12 12 C 1.37879 * 120.00050 * 180.02562 * 10 9 8 13 13 N 1.31519 * 119.99986 * 359.97438 * 12 10 9 14 14 Si 1.86801 * 120.00102 * 180.02562 * 12 10 9 15 15 H 1.48498 * 109.47408 * 89.99836 * 14 12 10 16 16 H 1.48503 * 109.46737 * 209.99903 * 14 12 10 17 17 H 1.48493 * 109.46973 * 329.99455 * 14 12 10 18 18 C 1.46928 * 118.73649 * 53.61446 * 5 4 3 19 19 C 1.53035 * 109.44982 * 120.06203 * 2 1 3 20 20 H 1.08993 * 109.47457 * 60.00394 * 1 2 3 21 21 H 1.09012 * 109.46595 * 180.02562 * 1 2 3 22 22 H 1.08997 * 109.47168 * 299.99920 * 1 2 3 23 23 H 1.08997 * 109.46174 * 240.02778 * 2 1 3 24 24 H 1.08997 * 109.49893 * 61.42352 * 3 2 1 25 25 H 1.09000 * 109.49628 * 301.32407 * 3 2 1 26 26 H 1.09007 * 109.58041 * 185.57780 * 4 3 2 27 27 H 1.08997 * 109.70744 * 65.22182 * 4 3 2 28 28 H 0.97001 * 120.00047 * 4.98779 * 8 6 5 29 29 H 1.08999 * 109.47004 * 300.00483 * 9 8 6 30 30 H 1.08999 * 109.46827 * 60.00446 * 9 8 6 31 31 H 0.96992 * 120.00223 * 180.02562 * 13 12 10 32 32 H 1.09004 * 109.58445 * 66.17545 * 18 5 4 33 33 H 1.08997 * 109.58929 * 186.59798 * 18 5 4 34 34 H 1.08997 * 109.49936 * 298.57363 * 19 2 1 35 35 H 1.09001 * 109.50058 * 58.66955 * 19 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0398 1.4430 0.0000 4 6 3.5713 1.4392 -0.0346 5 7 4.0676 0.6240 1.0824 6 6 4.9655 1.1261 1.9532 7 16 5.4322 0.2122 3.3236 8 7 5.4958 2.3475 1.7451 9 6 6.5510 2.8483 2.6295 10 6 6.9671 4.2266 2.1846 11 1 6.4927 4.6840 1.3290 12 6 7.9534 4.9037 2.8699 13 7 8.5308 4.3469 3.9122 14 14 8.4688 6.6126 2.3189 15 1 7.6360 7.6283 3.0118 16 1 9.8984 6.8312 2.6558 17 1 8.2816 6.7368 0.8510 18 6 3.5711 -0.7511 1.2285 19 6 2.0396 -0.7229 1.2489 20 1 -0.3634 0.5137 -0.8899 21 1 -0.3633 -1.0278 0.0005 22 1 -0.3633 0.5138 0.8900 23 1 1.8932 -0.5134 -0.8903 24 1 1.6975 1.9498 0.9023 25 1 1.6573 1.9640 -0.8777 26 1 3.9415 2.4597 0.0650 27 1 3.9166 1.0157 -0.9778 28 1 5.1788 2.8950 1.0098 29 1 6.1764 2.8944 3.6520 30 1 7.4093 2.1778 2.5868 31 1 9.2244 4.8234 4.3945 32 1 3.9143 -1.3547 0.3882 33 1 3.9413 -1.1760 2.1615 34 1 1.6974 -0.1957 2.1394 35 1 1.6570 -1.7434 1.2602 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000244281881.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:57:10 Heat of formation + Delta-G solvation = 0.463315 kcal Electronic energy + Delta-G solvation = -15541.400570 eV Core-core repulsion = 13085.807701 eV Total energy + Delta-G solvation = -2455.592869 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 242.115 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.78256 -36.83945 -34.21118 -32.55349 -31.36166 -28.99002 -27.03713 -24.40909 -23.62916 -22.36907 -21.41720 -19.93196 -18.14656 -16.60512 -16.09473 -15.10653 -14.94662 -14.73639 -14.44356 -14.13172 -13.75144 -13.34818 -13.28843 -12.77167 -12.19208 -12.14551 -12.03753 -11.42504 -11.33280 -11.05042 -11.00385 -10.72679 -10.62757 -10.51761 -10.33182 -10.24184 -9.52557 -8.76879 -8.07600 -7.09797 -6.63554 -6.21591 -4.32039 2.14098 2.56298 3.20066 3.22354 3.26923 3.28675 4.01024 4.30951 4.47371 4.57206 4.59742 4.93948 5.03713 5.13384 5.23349 5.27868 5.40764 5.46040 5.55549 5.60219 5.72733 5.82751 5.92135 5.97272 6.06617 6.25100 6.59882 6.74129 7.26174 7.41802 7.44028 7.72050 7.86772 8.24186 8.72619 9.33353 10.86976 Molecular weight = 242.11amu Principal moments of inertia in cm(-1) A = 0.034235 B = 0.005617 C = 0.004963 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 817.681951 B = 4984.001083 C = 5640.384557 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.094 4.094 3 C -0.127 4.127 4 C 0.098 3.902 5 N -0.586 5.586 6 C 0.561 3.439 7 S -0.680 6.680 8 N -0.654 5.654 9 C 0.251 3.749 10 C -0.556 4.556 11 H 0.060 0.940 12 C 0.070 3.930 13 N -0.875 5.875 14 Si 0.905 3.095 15 H -0.278 1.278 16 H -0.283 1.283 17 H -0.273 1.273 18 C 0.106 3.894 19 C -0.127 4.127 20 H 0.053 0.947 21 H 0.055 0.945 22 H 0.055 0.945 23 H 0.071 0.929 24 H 0.070 0.930 25 H 0.076 0.924 26 H 0.080 0.920 27 H 0.075 0.925 28 H 0.388 0.612 29 H 0.051 0.949 30 H 0.047 0.953 31 H 0.268 0.732 32 H 0.066 0.934 33 H 0.127 0.873 34 H 0.070 0.930 35 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.307 -6.065 -11.088 19.090 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.112 4.112 3 C -0.166 4.166 4 C -0.028 4.028 5 N -0.301 5.301 6 C 0.200 3.800 7 S -0.552 6.552 8 N -0.279 5.279 9 C 0.131 3.869 10 C -0.594 4.594 11 H 0.078 0.922 12 C -0.136 4.136 13 N -0.511 5.511 14 Si 0.731 3.269 15 H -0.204 1.204 16 H -0.208 1.208 17 H -0.198 1.198 18 C -0.017 4.017 19 C -0.166 4.166 20 H 0.072 0.928 21 H 0.074 0.926 22 H 0.074 0.926 23 H 0.089 0.911 24 H 0.088 0.912 25 H 0.095 0.905 26 H 0.098 0.902 27 H 0.093 0.907 28 H 0.225 0.775 29 H 0.069 0.931 30 H 0.065 0.935 31 H 0.078 0.922 32 H 0.084 0.916 33 H 0.144 0.856 34 H 0.088 0.912 35 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -13.748 -6.525 -10.030 18.226 hybrid contribution -0.074 1.781 -1.364 2.245 sum -13.822 -4.743 -11.395 18.531 Atomic orbital electron populations 1.21817 0.94976 1.01754 1.01773 1.21156 0.95755 0.95637 0.98696 1.21969 0.94259 0.97360 1.03012 1.21850 0.94984 0.96008 0.89947 1.47062 1.41829 1.14877 1.26285 1.22235 0.81993 0.86635 0.89135 1.93118 1.77716 1.61807 1.22518 1.46125 1.36965 1.12825 1.31987 1.19634 0.83755 0.93873 0.89674 1.21131 1.22255 1.00678 1.15379 0.92168 1.24898 0.95578 0.98470 0.94610 1.69984 1.25036 1.37849 1.18256 0.86404 0.78062 0.83510 0.78878 1.20359 1.20807 1.19834 1.22055 0.93323 0.80594 1.05759 1.21978 0.95269 1.01108 0.98203 0.92771 0.92576 0.92616 0.91055 0.91156 0.90528 0.90170 0.90655 0.77478 0.93090 0.93479 0.92201 0.91551 0.85555 0.91165 0.90521 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.08 9.19 37.16 0.34 -0.74 16 2 C -0.09 -0.81 2.68 -90.58 -0.24 -1.05 16 3 C -0.13 -1.19 5.36 -26.61 -0.14 -1.33 16 4 C 0.10 1.11 6.38 -3.71 -0.02 1.08 16 5 N -0.59 -8.76 2.97 -174.78 -0.52 -9.28 16 6 C 0.56 11.21 7.71 -86.92 -0.67 10.54 16 7 S -0.68 -16.39 27.01 -107.50 -2.90 -19.29 16 8 N -0.65 -13.58 5.46 -63.22 -0.34 -13.92 16 9 C 0.25 6.51 4.90 -5.20 -0.03 6.48 16 10 C -0.56 -14.77 9.28 -34.44 -0.32 -15.09 16 11 H 0.06 1.49 7.60 -52.49 -0.40 1.09 16 12 C 0.07 1.90 5.46 -17.82 -0.10 1.80 16 13 N -0.88 -25.51 13.29 55.43 0.74 -24.77 16 14 Si 0.90 20.52 29.54 -169.99 -5.02 15.50 16 15 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 16 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 17 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 18 C 0.11 1.38 6.34 -3.71 -0.02 1.36 16 19 C -0.13 -1.30 5.36 -26.61 -0.14 -1.45 16 20 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 21 H 0.06 0.38 8.14 -51.92 -0.42 -0.04 16 22 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 23 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 24 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 25 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 26 H 0.08 0.92 5.65 -51.93 -0.29 0.63 16 27 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 28 H 0.39 6.90 5.81 -40.82 -0.24 6.66 16 29 H 0.05 1.49 7.89 -51.93 -0.41 1.08 16 30 H 0.05 1.36 8.09 -51.93 -0.42 0.95 16 31 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 32 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 33 H 0.13 2.00 5.93 -49.66 -0.29 1.70 16 34 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 35 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 LS Contribution 292.94 15.07 4.41 4.41 Total: -1.00 -31.85 292.94 -10.40 -42.25 By element: Atomic # 1 Polarization: 8.91 SS G_CDS: -5.42 Total: 3.50 kcal Atomic # 6 Polarization: 2.95 SS G_CDS: -1.35 Total: 1.61 kcal Atomic # 7 Polarization: -47.85 SS G_CDS: -0.13 Total: -47.98 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -5.02 Total: 15.50 kcal Atomic # 16 Polarization: -16.39 SS G_CDS: -2.90 Total: -19.29 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -31.85 -10.40 -42.25 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000244281881.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.714 kcal (2) G-P(sol) polarization free energy of solvation -31.850 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.864 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.401 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.251 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.463 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds