Wall clock time and date at job start Mon Mar 30 2020 03:57:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53042 * 109.45572 * 2 1 4 4 C 1.53195 * 109.30852 * 181.37320 * 3 2 1 5 5 N 1.46924 * 108.77545 * 305.35972 * 4 3 2 6 6 C 1.34778 * 120.63408 * 233.33369 * 5 4 3 7 7 S 1.71200 * 119.99861 * 174.78277 * 6 5 4 8 8 N 1.34775 * 119.99792 * 354.78266 * 6 5 4 9 9 C 1.46501 * 119.99898 * 184.98163 * 8 6 5 10 10 C 1.50694 * 109.47020 * 180.02562 * 9 8 6 11 11 H 1.07997 * 120.00092 * 0.02562 * 10 9 8 12 12 C 1.37879 * 120.00050 * 180.02562 * 10 9 8 13 13 N 1.31519 * 119.99986 * 359.97438 * 12 10 9 14 14 Si 1.86801 * 120.00102 * 180.02562 * 12 10 9 15 15 H 1.48498 * 109.47408 * 89.99836 * 14 12 10 16 16 H 1.48503 * 109.46737 * 209.99903 * 14 12 10 17 17 H 1.48493 * 109.46973 * 329.99455 * 14 12 10 18 18 C 1.46928 * 118.73649 * 53.61446 * 5 4 3 19 19 C 1.53035 * 109.44982 * 120.06203 * 2 1 3 20 20 H 1.08993 * 109.47457 * 60.00394 * 1 2 3 21 21 H 1.09012 * 109.46595 * 180.02562 * 1 2 3 22 22 H 1.08997 * 109.47168 * 299.99920 * 1 2 3 23 23 H 1.08997 * 109.46174 * 240.02778 * 2 1 3 24 24 H 1.08997 * 109.49893 * 61.42352 * 3 2 1 25 25 H 1.09000 * 109.49628 * 301.32407 * 3 2 1 26 26 H 1.09007 * 109.58041 * 185.57780 * 4 3 2 27 27 H 1.08997 * 109.70744 * 65.22182 * 4 3 2 28 28 H 0.97001 * 120.00047 * 4.98779 * 8 6 5 29 29 H 1.08999 * 109.47004 * 300.00483 * 9 8 6 30 30 H 1.08999 * 109.46827 * 60.00446 * 9 8 6 31 31 H 0.96992 * 120.00223 * 180.02562 * 13 12 10 32 32 H 1.09004 * 109.58445 * 66.17545 * 18 5 4 33 33 H 1.08997 * 109.58929 * 186.59798 * 18 5 4 34 34 H 1.08997 * 109.49936 * 298.57363 * 19 2 1 35 35 H 1.09001 * 109.50058 * 58.66955 * 19 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0398 1.4430 0.0000 4 6 3.5713 1.4392 -0.0346 5 7 4.0676 0.6240 1.0824 6 6 4.9655 1.1261 1.9532 7 16 5.4322 0.2122 3.3236 8 7 5.4958 2.3475 1.7451 9 6 6.5510 2.8483 2.6295 10 6 6.9671 4.2266 2.1846 11 1 6.4927 4.6840 1.3290 12 6 7.9534 4.9037 2.8699 13 7 8.5308 4.3469 3.9122 14 14 8.4688 6.6126 2.3189 15 1 7.6360 7.6283 3.0118 16 1 9.8984 6.8312 2.6558 17 1 8.2816 6.7368 0.8510 18 6 3.5711 -0.7511 1.2285 19 6 2.0396 -0.7229 1.2489 20 1 -0.3634 0.5137 -0.8899 21 1 -0.3633 -1.0278 0.0005 22 1 -0.3633 0.5138 0.8900 23 1 1.8932 -0.5134 -0.8903 24 1 1.6975 1.9498 0.9023 25 1 1.6573 1.9640 -0.8777 26 1 3.9415 2.4597 0.0650 27 1 3.9166 1.0157 -0.9778 28 1 5.1788 2.8950 1.0098 29 1 6.1764 2.8944 3.6520 30 1 7.4093 2.1778 2.5868 31 1 9.2244 4.8234 4.3945 32 1 3.9143 -1.3547 0.3882 33 1 3.9413 -1.1760 2.1615 34 1 1.6974 -0.1957 2.1394 35 1 1.6570 -1.7434 1.2602 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000244281881.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:57:10 Heat of formation + Delta-G solvation = -19.194060 kcal Electronic energy + Delta-G solvation = -15542.252978 eV Core-core repulsion = 13085.807701 eV Total energy + Delta-G solvation = -2456.445277 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 242.115 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.02396 -38.24606 -35.66090 -34.38478 -32.32693 -30.33343 -28.64480 -25.58409 -25.12722 -23.88203 -22.63594 -20.94941 -19.61595 -18.23435 -17.99034 -16.72312 -16.29472 -15.81222 -15.55978 -15.18573 -15.12648 -14.93286 -14.49955 -14.18560 -13.68396 -13.15960 -12.93964 -12.81055 -12.75370 -12.45980 -12.31794 -12.20989 -12.15368 -11.76294 -11.57378 -11.37631 -11.32367 -10.74583 -9.68519 -8.96769 -8.56254 -8.29496 -6.49604 0.47771 0.94881 1.42283 1.44998 1.55536 1.70501 2.32062 2.54335 3.04402 3.63766 3.74981 3.82641 4.02243 4.20591 4.31229 4.40777 4.66119 4.71960 4.80896 4.84431 4.91827 5.00374 5.00625 5.09408 5.17212 5.21267 5.26307 5.35540 5.43230 5.51151 5.67398 5.80379 5.94956 6.46212 6.70230 7.22508 8.80889 Molecular weight = 242.11amu Principal moments of inertia in cm(-1) A = 0.034235 B = 0.005617 C = 0.004963 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 817.681951 B = 4984.001083 C = 5640.384557 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.089 4.089 3 C -0.123 4.123 4 C 0.087 3.913 5 N -0.563 5.563 6 C 0.579 3.421 7 S -0.773 6.773 8 N -0.651 5.651 9 C 0.277 3.723 10 C -0.566 4.566 11 H 0.083 0.917 12 C 0.011 3.989 13 N -0.923 5.923 14 Si 0.985 3.015 15 H -0.271 1.271 16 H -0.283 1.283 17 H -0.255 1.255 18 C 0.099 3.901 19 C -0.120 4.120 20 H 0.067 0.933 21 H 0.064 0.936 22 H 0.045 0.955 23 H 0.090 0.910 24 H 0.053 0.947 25 H 0.107 0.893 26 H 0.080 0.920 27 H 0.107 0.893 28 H 0.406 0.594 29 H 0.008 0.992 30 H 0.007 0.993 31 H 0.270 0.730 32 H 0.094 0.906 33 H 0.094 0.906 34 H 0.048 0.952 35 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.128 -5.022 -14.568 22.306 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.108 4.108 3 C -0.161 4.161 4 C -0.037 4.037 5 N -0.273 5.273 6 C 0.214 3.786 7 S -0.646 6.646 8 N -0.279 5.279 9 C 0.155 3.845 10 C -0.604 4.604 11 H 0.101 0.899 12 C -0.190 4.190 13 N -0.560 5.560 14 Si 0.808 3.192 15 H -0.196 1.196 16 H -0.209 1.209 17 H -0.179 1.179 18 C -0.024 4.024 19 C -0.158 4.158 20 H 0.086 0.914 21 H 0.083 0.917 22 H 0.064 0.936 23 H 0.108 0.892 24 H 0.071 0.929 25 H 0.126 0.874 26 H 0.098 0.902 27 H 0.125 0.875 28 H 0.247 0.753 29 H 0.026 0.974 30 H 0.025 0.975 31 H 0.079 0.921 32 H 0.113 0.887 33 H 0.112 0.888 34 H 0.067 0.933 35 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -15.654 -5.515 -13.588 21.450 hybrid contribution 0.370 1.356 -0.377 1.456 sum -15.284 -4.158 -13.965 21.116 Atomic orbital electron populations 1.21782 0.93789 1.02448 1.01989 1.21164 0.96669 0.94863 0.98097 1.21985 0.92245 0.98195 1.03661 1.22324 0.96625 0.95526 0.89201 1.47435 1.38839 1.15854 1.25201 1.21674 0.82659 0.85705 0.88581 1.93285 1.80581 1.63691 1.27081 1.45572 1.36686 1.13443 1.32224 1.18915 0.83429 0.93555 0.88619 1.21528 1.22319 1.00622 1.15922 0.89938 1.26001 0.95446 1.03171 0.94386 1.70156 1.25871 1.40070 1.19909 0.85161 0.77322 0.77476 0.79283 1.19636 1.20900 1.17854 1.22276 0.95455 0.79368 1.05283 1.21945 0.92675 1.02608 0.98559 0.91390 0.91727 0.93596 0.89159 0.92861 0.87437 0.90189 0.87508 0.75290 0.97360 0.97509 0.92098 0.88746 0.88761 0.93315 0.88324 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.59 9.19 71.98 0.66 -0.93 16 2 C -0.09 -1.19 2.68 -10.77 -0.03 -1.21 16 3 C -0.12 -1.82 5.36 30.67 0.16 -1.65 16 4 C 0.09 1.66 6.38 86.36 0.55 2.22 16 5 N -0.56 -16.07 2.97 -706.90 -2.10 -18.18 16 6 C 0.58 23.53 7.71 179.05 1.38 24.91 16 7 S -0.77 -39.60 27.01 -56.49 -1.53 -41.13 16 8 N -0.65 -27.29 5.46 -353.92 -1.93 -29.22 16 9 C 0.28 15.00 4.90 85.63 0.42 15.42 16 10 C -0.57 -30.15 9.28 25.60 0.24 -29.91 16 11 H 0.08 3.93 7.60 -2.91 -0.02 3.91 16 12 C 0.01 0.60 5.46 84.65 0.46 1.06 16 13 N -0.92 -55.44 13.29 21.45 0.28 -55.16 16 14 Si 0.98 41.60 29.54 68.60 2.03 43.63 16 15 H -0.27 -11.10 7.11 99.48 0.71 -10.40 16 16 H -0.28 -11.93 7.11 99.48 0.71 -11.22 16 17 H -0.25 -9.93 7.11 99.48 0.71 -9.22 16 18 C 0.10 2.43 6.34 86.36 0.55 2.98 16 19 C -0.12 -2.19 5.36 30.67 0.16 -2.02 16 20 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 21 H 0.06 0.63 8.14 -2.38 -0.02 0.61 16 22 H 0.04 0.61 8.14 -2.39 -0.02 0.59 16 23 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 24 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 25 H 0.11 1.04 8.14 -2.39 -0.02 1.03 16 26 H 0.08 1.57 5.65 -2.38 -0.01 1.56 16 27 H 0.11 1.53 8.14 -2.39 -0.02 1.51 16 28 H 0.41 13.92 5.81 -92.71 -0.54 13.38 16 29 H 0.01 0.52 7.89 -2.39 -0.02 0.50 16 30 H 0.01 0.43 8.09 -2.39 -0.02 0.41 16 31 H 0.27 15.17 8.31 -92.71 -0.77 14.40 16 32 H 0.09 1.88 8.14 -2.38 -0.02 1.86 16 33 H 0.09 3.06 5.93 -3.83 -0.02 3.04 16 34 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 35 H 0.10 1.41 8.14 -2.39 -0.02 1.39 16 Total: -1.00 -74.09 292.94 1.83 -72.26 By element: Atomic # 1 Polarization: 16.42 SS G_CDS: 0.52 Total: 16.94 kcal Atomic # 6 Polarization: 6.30 SS G_CDS: 4.56 Total: 10.86 kcal Atomic # 7 Polarization: -98.81 SS G_CDS: -3.75 Total: -102.56 kcal Atomic # 14 Polarization: 41.60 SS G_CDS: 2.03 Total: 43.63 kcal Atomic # 16 Polarization: -39.60 SS G_CDS: -1.53 Total: -41.13 kcal Total: -74.09 1.83 -72.26 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000244281881.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.065 kcal (2) G-P(sol) polarization free energy of solvation -74.092 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.027 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.833 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.259 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.194 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds