Wall clock time and date at job start Mon Mar 30 2020 03:57:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08992 * 109.52451 * 2 1 4 4 C 1.53038 * 109.49983 * 239.91682 * 2 1 3 5 5 C 1.53043 * 109.54117 * 178.68428 * 4 2 1 6 6 C 1.53192 * 109.30994 * 61.36619 * 5 4 2 7 7 N 1.46930 * 108.77314 * 305.36341 * 6 5 4 8 8 C 1.34779 * 120.63232 * 233.58715 * 7 6 5 9 9 S 1.71199 * 120.00333 * 174.78796 * 8 7 6 10 10 N 1.34780 * 119.99690 * 355.06293 * 8 7 6 11 11 C 1.46501 * 119.99866 * 184.71373 * 10 8 7 12 12 C 1.50702 * 109.46945 * 180.02562 * 11 10 8 13 13 H 1.07999 * 120.00149 * 359.97438 * 12 11 10 14 14 C 1.37881 * 119.99643 * 180.02562 * 12 11 10 15 15 N 1.31518 * 119.99451 * 179.97438 * 14 12 11 16 16 Si 1.86796 * 120.00147 * 359.97438 * 14 12 11 17 17 H 1.48498 * 109.47101 * 90.00560 * 16 14 12 18 18 H 1.48498 * 109.47099 * 210.00155 * 16 14 12 19 19 H 1.48496 * 109.47107 * 330.00519 * 16 14 12 20 20 C 1.46925 * 118.74103 * 53.86601 * 7 6 5 21 21 H 1.09003 * 109.46996 * 180.08330 * 1 2 3 22 22 H 1.09000 * 109.47283 * 300.08017 * 1 2 3 23 23 H 1.08999 * 109.47134 * 60.08293 * 1 2 3 24 24 H 1.09001 * 109.46009 * 58.65964 * 4 2 1 25 25 H 1.09011 * 109.44891 * 298.69751 * 4 2 1 26 26 H 1.08997 * 109.49524 * 301.41713 * 5 4 2 27 27 H 1.08996 * 109.49904 * 181.31559 * 5 4 2 28 28 H 1.09004 * 109.58623 * 185.58235 * 6 5 4 29 29 H 1.08994 * 109.71107 * 65.22263 * 6 5 4 30 30 H 0.96998 * 120.00253 * 4.70938 * 10 8 7 31 31 H 1.08997 * 109.46899 * 299.99402 * 11 10 8 32 32 H 1.09003 * 109.47535 * 60.00015 * 11 10 8 33 33 H 0.97008 * 119.99311 * 179.97438 * 15 14 12 34 34 H 1.09004 * 109.58269 * 65.92265 * 20 7 6 35 35 H 1.08999 * 109.59130 * 186.34485 * 20 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8942 1.0272 0.0000 4 6 2.0408 -0.7231 -1.2483 5 6 3.5709 -0.6951 -1.2659 6 6 4.1053 -1.4268 -0.0307 7 7 3.5045 -0.8291 1.1696 8 6 4.2810 -0.3863 2.1784 9 16 3.5746 0.4273 3.5088 10 7 5.6143 -0.5792 2.1371 11 6 6.4463 -0.1912 3.2788 12 6 7.8887 -0.5096 2.9805 13 1 8.1587 -0.9567 2.0352 14 6 8.8636 -0.2311 3.9148 15 7 10.1224 -0.5095 3.6546 16 14 8.3966 0.5415 5.5501 17 1 8.1057 -0.5284 6.5380 18 1 9.5215 1.3768 6.0422 19 1 7.1914 1.3902 5.3704 20 6 2.0410 -0.7288 1.2521 21 1 -0.3633 -1.0277 0.0015 22 1 -0.3634 0.5151 0.8893 23 1 -0.3633 0.5125 -0.8907 24 1 1.6582 -0.2246 -2.1389 25 1 1.6967 -1.7574 -1.2350 26 1 3.9159 0.3388 -1.2540 27 1 3.9335 -1.1898 -2.1670 28 1 5.1896 -1.3246 0.0139 29 1 3.8396 -2.4824 -0.0852 30 1 6.0230 -0.9749 1.3515 31 1 6.3405 0.8787 3.4585 32 1 6.1279 -0.7416 4.1642 33 1 10.8084 -0.3132 4.3119 34 1 1.6084 -1.7283 1.2986 35 1 1.7629 -0.1662 2.1433 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000244332685.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:57:59 Heat of formation + Delta-G solvation = 3.411060 kcal Electronic energy + Delta-G solvation = -15618.777962 eV Core-core repulsion = 13163.312916 eV Total energy + Delta-G solvation = -2455.465046 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 242.115 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.87875 -36.92090 -34.01248 -32.54391 -32.31805 -28.47410 -27.05552 -25.58530 -23.18746 -22.25559 -21.22418 -19.98300 -18.21189 -16.89295 -16.39237 -15.31260 -14.87502 -14.68106 -14.61935 -14.22423 -13.73377 -13.47210 -13.27874 -12.84586 -12.48992 -12.26917 -12.00226 -11.57330 -11.31133 -11.05601 -10.94770 -10.86757 -10.74640 -10.48380 -10.37787 -9.94942 -9.63892 -8.81927 -8.30356 -7.27626 -6.83748 -6.28737 -4.33873 1.97849 2.41289 3.07754 3.28546 3.35370 3.48612 3.88656 4.31416 4.45496 4.57275 4.62161 4.76919 4.99792 5.07484 5.17615 5.26340 5.39618 5.45375 5.53741 5.58141 5.69836 5.79576 5.86356 5.96450 6.04277 6.21181 6.42761 6.55452 6.91639 6.98347 7.23238 7.37328 7.92275 8.22946 8.64667 9.28892 10.82399 Molecular weight = 242.11amu Principal moments of inertia in cm(-1) A = 0.038833 B = 0.006017 C = 0.005327 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 720.862827 B = 4651.990778 C = 5254.813289 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.106 4.106 3 H 0.077 0.923 4 C -0.115 4.115 5 C -0.133 4.133 6 C 0.097 3.903 7 N -0.583 5.583 8 C 0.564 3.436 9 S -0.685 6.685 10 N -0.649 5.649 11 C 0.222 3.778 12 C -0.555 4.555 13 H 0.077 0.923 14 C 0.084 3.916 15 N -0.889 5.889 16 Si 0.873 3.127 17 H -0.271 1.271 18 H -0.283 1.283 19 H -0.251 1.251 20 C 0.111 3.889 21 H 0.055 0.945 22 H 0.061 0.939 23 H 0.056 0.944 24 H 0.066 0.934 25 H 0.064 0.936 26 H 0.070 0.930 27 H 0.078 0.922 28 H 0.082 0.918 29 H 0.078 0.922 30 H 0.394 0.606 31 H 0.049 0.951 32 H 0.041 0.959 33 H 0.270 0.730 34 H 0.068 0.932 35 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.310 -2.354 -11.393 19.228 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.125 4.125 3 H 0.096 0.904 4 C -0.153 4.153 5 C -0.172 4.172 6 C -0.029 4.029 7 N -0.296 5.296 8 C 0.203 3.797 9 S -0.557 6.557 10 N -0.274 5.274 11 C 0.100 3.900 12 C -0.593 4.593 13 H 0.095 0.905 14 C -0.121 4.121 15 N -0.526 5.526 16 Si 0.698 3.302 17 H -0.196 1.196 18 H -0.208 1.208 19 H -0.175 1.175 20 C -0.013 4.013 21 H 0.074 0.926 22 H 0.080 0.920 23 H 0.075 0.925 24 H 0.084 0.916 25 H 0.083 0.917 26 H 0.089 0.911 27 H 0.097 0.903 28 H 0.100 0.900 29 H 0.096 0.904 30 H 0.233 0.767 31 H 0.067 0.933 32 H 0.059 0.941 33 H 0.079 0.921 34 H 0.086 0.914 35 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -15.432 -1.843 -10.412 18.707 hybrid contribution 0.662 -0.326 -0.333 0.810 sum -14.770 -2.169 -10.745 18.394 Atomic orbital electron populations 1.21731 0.94206 1.01937 1.02194 1.21573 0.96068 1.00411 0.94451 0.90450 1.21622 0.94828 1.00889 0.97955 1.21904 0.96503 1.01626 0.97132 1.21900 0.98535 0.97797 0.84702 1.47061 1.07289 1.59431 1.15864 1.22200 0.84844 0.83581 0.89113 1.93105 1.76311 1.57005 1.29270 1.45759 1.03377 1.56950 1.21300 1.19977 0.88997 0.97774 0.83207 1.20995 0.88717 1.44518 1.05037 0.90503 1.24715 0.94497 0.94313 0.98580 1.69876 1.00212 1.46558 1.35917 0.86842 0.79295 0.80521 0.83497 1.19629 1.20837 1.17502 1.22259 0.76327 1.01516 1.01159 0.92593 0.91978 0.92462 0.91557 0.91719 0.91146 0.90315 0.90004 0.90426 0.76749 0.93281 0.94146 0.92065 0.91357 0.85549 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.15 9.20 37.16 0.34 -0.81 16 2 C -0.11 -1.05 2.89 -90.28 -0.26 -1.31 16 3 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 4 C -0.12 -0.95 5.16 -26.69 -0.14 -1.09 16 5 C -0.13 -1.20 6.08 -26.61 -0.16 -1.36 16 6 C 0.10 1.06 6.39 -3.71 -0.02 1.03 16 7 N -0.58 -8.38 2.97 -174.52 -0.52 -8.90 16 8 C 0.56 10.74 7.71 -86.91 -0.67 10.07 16 9 S -0.68 -15.59 27.01 -107.50 -2.90 -18.49 16 10 N -0.65 -12.94 5.46 -63.21 -0.34 -13.28 16 11 C 0.22 5.36 3.96 -5.19 -0.02 5.34 16 12 C -0.55 -14.92 9.83 -34.44 -0.34 -15.26 16 13 H 0.08 2.14 7.84 -52.49 -0.41 1.73 16 14 C 0.08 2.34 5.47 -17.82 -0.10 2.24 16 15 N -0.89 -26.06 13.96 55.43 0.77 -25.29 16 16 Si 0.87 21.38 27.47 -169.99 -4.67 16.71 16 17 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 18 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 19 H -0.25 -6.20 6.54 56.52 0.37 -5.83 16 20 C 0.11 1.39 5.66 -3.48 -0.02 1.37 16 21 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 22 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 23 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 24 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 25 H 0.06 0.49 8.14 -51.92 -0.42 0.07 16 26 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 27 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.08 0.92 5.64 -51.93 -0.29 0.63 16 29 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.39 6.91 5.81 -40.82 -0.24 6.67 16 31 H 0.05 1.27 6.95 -51.93 -0.36 0.91 16 32 H 0.04 1.03 7.51 -51.93 -0.39 0.64 16 33 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 34 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 35 H 0.13 1.92 5.93 -49.64 -0.29 1.62 16 LS Contribution 289.37 15.07 4.36 4.36 Total: -1.00 -31.95 289.37 -10.07 -42.02 By element: Atomic # 1 Polarization: 8.02 SS G_CDS: -5.38 Total: 2.64 kcal Atomic # 6 Polarization: 1.62 SS G_CDS: -1.39 Total: 0.24 kcal Atomic # 7 Polarization: -47.38 SS G_CDS: -0.09 Total: -47.47 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -4.67 Total: 16.71 kcal Atomic # 16 Polarization: -15.59 SS G_CDS: -2.90 Total: -18.49 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -31.95 -10.07 -42.02 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000244332685.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.427 kcal (2) G-P(sol) polarization free energy of solvation -31.945 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.482 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.071 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.016 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.411 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds