Wall clock time and date at job start Mon Mar 30 2020 03:57:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08992 * 109.52451 * 2 1 4 4 C 1.53038 * 109.49983 * 239.91682 * 2 1 3 5 5 C 1.53043 * 109.54117 * 178.68428 * 4 2 1 6 6 C 1.53192 * 109.30994 * 61.36619 * 5 4 2 7 7 N 1.46930 * 108.77314 * 305.36341 * 6 5 4 8 8 C 1.34779 * 120.63232 * 233.58715 * 7 6 5 9 9 S 1.71199 * 120.00333 * 174.78796 * 8 7 6 10 10 N 1.34780 * 119.99690 * 355.06293 * 8 7 6 11 11 C 1.46501 * 119.99866 * 184.71373 * 10 8 7 12 12 C 1.50702 * 109.46945 * 180.02562 * 11 10 8 13 13 H 1.07999 * 120.00149 * 359.97438 * 12 11 10 14 14 C 1.37881 * 119.99643 * 180.02562 * 12 11 10 15 15 N 1.31518 * 119.99451 * 179.97438 * 14 12 11 16 16 Si 1.86796 * 120.00147 * 359.97438 * 14 12 11 17 17 H 1.48498 * 109.47101 * 90.00560 * 16 14 12 18 18 H 1.48498 * 109.47099 * 210.00155 * 16 14 12 19 19 H 1.48496 * 109.47107 * 330.00519 * 16 14 12 20 20 C 1.46925 * 118.74103 * 53.86601 * 7 6 5 21 21 H 1.09003 * 109.46996 * 180.08330 * 1 2 3 22 22 H 1.09000 * 109.47283 * 300.08017 * 1 2 3 23 23 H 1.08999 * 109.47134 * 60.08293 * 1 2 3 24 24 H 1.09001 * 109.46009 * 58.65964 * 4 2 1 25 25 H 1.09011 * 109.44891 * 298.69751 * 4 2 1 26 26 H 1.08997 * 109.49524 * 301.41713 * 5 4 2 27 27 H 1.08996 * 109.49904 * 181.31559 * 5 4 2 28 28 H 1.09004 * 109.58623 * 185.58235 * 6 5 4 29 29 H 1.08994 * 109.71107 * 65.22263 * 6 5 4 30 30 H 0.96998 * 120.00253 * 4.70938 * 10 8 7 31 31 H 1.08997 * 109.46899 * 299.99402 * 11 10 8 32 32 H 1.09003 * 109.47535 * 60.00015 * 11 10 8 33 33 H 0.97008 * 119.99311 * 179.97438 * 15 14 12 34 34 H 1.09004 * 109.58269 * 65.92265 * 20 7 6 35 35 H 1.08999 * 109.59130 * 186.34485 * 20 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8942 1.0272 0.0000 4 6 2.0408 -0.7231 -1.2483 5 6 3.5709 -0.6951 -1.2659 6 6 4.1053 -1.4268 -0.0307 7 7 3.5045 -0.8291 1.1696 8 6 4.2810 -0.3863 2.1784 9 16 3.5746 0.4273 3.5088 10 7 5.6143 -0.5792 2.1371 11 6 6.4463 -0.1912 3.2788 12 6 7.8887 -0.5096 2.9805 13 1 8.1587 -0.9567 2.0352 14 6 8.8636 -0.2311 3.9148 15 7 10.1224 -0.5095 3.6546 16 14 8.3966 0.5415 5.5501 17 1 8.1057 -0.5284 6.5380 18 1 9.5215 1.3768 6.0422 19 1 7.1914 1.3902 5.3704 20 6 2.0410 -0.7288 1.2521 21 1 -0.3633 -1.0277 0.0015 22 1 -0.3634 0.5151 0.8893 23 1 -0.3633 0.5125 -0.8907 24 1 1.6582 -0.2246 -2.1389 25 1 1.6967 -1.7574 -1.2350 26 1 3.9159 0.3388 -1.2540 27 1 3.9335 -1.1898 -2.1670 28 1 5.1896 -1.3246 0.0139 29 1 3.8396 -2.4824 -0.0852 30 1 6.0230 -0.9749 1.3515 31 1 6.3405 0.8787 3.4585 32 1 6.1279 -0.7416 4.1642 33 1 10.8084 -0.3132 4.3119 34 1 1.6084 -1.7283 1.2986 35 1 1.7629 -0.1662 2.1433 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000244332685.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:57:59 Heat of formation + Delta-G solvation = -16.248103 kcal Electronic energy + Delta-G solvation = -15619.630447 eV Core-core repulsion = 13163.312916 eV Total energy + Delta-G solvation = -2456.317531 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 242.115 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.06697 -38.29243 -35.49038 -34.30341 -33.26765 -30.31270 -27.87560 -26.92993 -24.29227 -24.06013 -22.39221 -20.92200 -19.73435 -18.56246 -18.11257 -16.64833 -16.34376 -15.84729 -15.76205 -15.44392 -15.19467 -14.95751 -14.52364 -14.25143 -13.63445 -13.21191 -13.12255 -13.00237 -12.74230 -12.50048 -12.25744 -12.07362 -11.95818 -11.79071 -11.65515 -11.60820 -11.32128 -10.91707 -9.75678 -8.99800 -8.62598 -8.44917 -6.53534 0.42339 0.88820 1.33330 1.36249 1.52556 1.64627 2.26777 2.41091 2.91498 3.61854 3.76505 3.85421 3.92027 4.19041 4.31056 4.38053 4.59960 4.67877 4.73217 4.79545 4.86625 4.90396 4.95660 5.02824 5.11457 5.12929 5.16577 5.25759 5.34423 5.47723 5.56847 5.77870 6.10816 6.35100 6.53771 7.12919 8.68944 Molecular weight = 242.11amu Principal moments of inertia in cm(-1) A = 0.038833 B = 0.006017 C = 0.005327 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 720.862827 B = 4651.990778 C = 5254.813289 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.099 4.099 3 H 0.055 0.945 4 C -0.111 4.111 5 C -0.128 4.128 6 C 0.086 3.914 7 N -0.562 5.562 8 C 0.579 3.421 9 S -0.763 6.763 10 N -0.651 5.651 11 C 0.243 3.757 12 C -0.554 4.554 13 H 0.061 0.939 14 C 0.038 3.962 15 N -0.926 5.926 16 Si 0.929 3.071 17 H -0.265 1.265 18 H -0.273 1.273 19 H -0.258 1.258 20 C 0.104 3.896 21 H 0.070 0.930 22 H 0.051 0.949 23 H 0.071 0.929 24 H 0.083 0.917 25 H 0.082 0.918 26 H 0.053 0.947 27 H 0.108 0.892 28 H 0.078 0.922 29 H 0.107 0.893 30 H 0.407 0.593 31 H 0.031 0.969 32 H 0.028 0.972 33 H 0.274 0.726 34 H 0.093 0.907 35 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.692 -3.361 -13.181 21.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.119 4.119 3 H 0.073 0.927 4 C -0.148 4.148 5 C -0.167 4.167 6 C -0.038 4.038 7 N -0.272 5.272 8 C 0.214 3.786 9 S -0.636 6.636 10 N -0.279 5.279 11 C 0.119 3.881 12 C -0.592 4.592 13 H 0.079 0.921 14 C -0.164 4.164 15 N -0.564 5.564 16 Si 0.753 3.247 17 H -0.189 1.189 18 H -0.198 1.198 19 H -0.182 1.182 20 C -0.018 4.018 21 H 0.089 0.911 22 H 0.070 0.930 23 H 0.090 0.910 24 H 0.102 0.898 25 H 0.101 0.899 26 H 0.072 0.928 27 H 0.126 0.874 28 H 0.096 0.904 29 H 0.125 0.875 30 H 0.248 0.752 31 H 0.049 0.951 32 H 0.046 0.954 33 H 0.084 0.916 34 H 0.111 0.889 35 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -16.861 -2.877 -12.271 21.051 hybrid contribution 1.023 -0.089 0.048 1.028 sum -15.838 -2.966 -12.223 20.225 Atomic orbital electron populations 1.21707 0.92514 1.02979 1.02434 1.21524 0.97386 0.98982 0.93996 0.92686 1.21629 0.94010 1.01835 0.97326 1.21917 0.97155 1.00666 0.96926 1.22337 0.98374 0.99446 0.83680 1.47428 1.07981 1.56505 1.15256 1.21714 0.84503 0.83266 0.89149 1.93238 1.77193 1.60350 1.32846 1.45316 1.03470 1.58105 1.20971 1.19436 0.88063 0.96395 0.84164 1.21177 0.90065 1.43606 1.04305 0.92087 1.25425 0.94464 0.94845 1.01622 1.69957 1.01160 1.47982 1.37263 0.85961 0.78850 0.79838 0.80068 1.18949 1.19761 1.18215 1.22478 0.74978 1.02819 1.01552 0.91108 0.93034 0.91027 0.89831 0.89900 0.92781 0.87406 0.90403 0.87526 0.75190 0.95126 0.95390 0.91640 0.88894 0.88458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.87 9.20 71.98 0.66 -1.21 16 2 C -0.10 -1.74 2.89 -10.57 -0.03 -1.78 16 3 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 4 C -0.11 -1.37 5.16 30.62 0.16 -1.21 16 5 C -0.13 -1.84 6.08 30.67 0.19 -1.66 16 6 C 0.09 1.61 6.39 86.36 0.55 2.16 16 7 N -0.56 -15.25 2.97 -706.05 -2.09 -17.34 16 8 C 0.58 21.90 7.71 179.05 1.38 23.28 16 9 S -0.76 -35.59 27.01 -56.49 -1.53 -37.12 16 10 N -0.65 -25.82 5.46 -353.90 -1.93 -27.75 16 11 C 0.24 11.84 3.96 85.63 0.34 12.18 16 12 C -0.55 -30.00 9.83 25.60 0.25 -29.75 16 13 H 0.06 3.43 7.84 -2.91 -0.02 3.41 16 14 C 0.04 2.13 5.47 84.66 0.46 2.59 16 15 N -0.93 -54.50 13.96 21.45 0.30 -54.20 16 16 Si 0.93 44.43 27.47 68.60 1.88 46.31 16 17 H -0.26 -12.31 7.11 99.48 0.71 -11.60 16 18 H -0.27 -12.50 7.11 99.48 0.71 -11.79 16 19 H -0.26 -12.56 6.54 99.48 0.65 -11.91 16 20 C 0.10 2.43 5.66 86.51 0.49 2.92 16 21 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 22 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 23 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 24 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 25 H 0.08 0.80 8.14 -2.38 -0.02 0.78 16 26 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 27 H 0.11 1.02 8.14 -2.39 -0.02 1.00 16 28 H 0.08 1.57 5.64 -2.39 -0.01 1.55 16 29 H 0.11 1.52 8.14 -2.39 -0.02 1.50 16 30 H 0.41 13.96 5.81 -92.71 -0.54 13.42 16 31 H 0.03 1.62 6.95 -2.39 -0.02 1.60 16 32 H 0.03 1.45 7.51 -2.39 -0.02 1.43 16 33 H 0.27 15.08 8.31 -92.70 -0.77 14.31 16 34 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16 35 H 0.10 2.96 5.93 -3.84 -0.02 2.94 16 Total: -1.00 -70.42 289.37 1.55 -68.87 By element: Atomic # 1 Polarization: 13.23 SS G_CDS: 0.47 Total: 13.70 kcal Atomic # 6 Polarization: 3.08 SS G_CDS: 4.45 Total: 7.53 kcal Atomic # 7 Polarization: -95.56 SS G_CDS: -3.73 Total: -99.29 kcal Atomic # 14 Polarization: 44.43 SS G_CDS: 1.88 Total: 46.31 kcal Atomic # 16 Polarization: -35.59 SS G_CDS: -1.53 Total: -37.12 kcal Total: -70.42 1.55 -68.87 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000244332685.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.618 kcal (2) G-P(sol) polarization free energy of solvation -70.417 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.867 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.248 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds