Wall clock time and date at job start Mon Mar 30 2020 03:58:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 109.52206 * 2 1 4 4 C 1.53042 * 109.49555 * 120.07437 * 2 1 3 5 5 C 1.53040 * 109.53758 * 181.31667 * 4 2 1 6 6 C 1.53191 * 109.33842 * 298.61894 * 5 4 2 7 7 N 1.46996 * 108.73728 * 54.62677 * 6 5 4 8 8 C 1.34777 * 120.61334 * 126.38596 * 7 6 5 9 9 S 1.71206 * 119.99515 * 174.94059 * 8 7 6 10 10 N 1.34771 * 120.00489 * 354.94282 * 8 7 6 11 11 C 1.46496 * 120.00025 * 185.07457 * 10 8 7 12 12 C 1.50706 * 109.46823 * 179.97438 * 11 10 8 13 13 H 1.07996 * 119.99860 * 0.02562 * 12 11 10 14 14 C 1.37879 * 119.99604 * 180.02562 * 12 11 10 15 15 N 1.31513 * 119.99722 * 180.02562 * 14 12 11 16 16 Si 1.86800 * 120.00200 * 0.02562 * 14 12 11 17 17 H 1.48492 * 109.47339 * 90.00244 * 16 14 12 18 18 H 1.48502 * 109.46910 * 210.00335 * 16 14 12 19 19 H 1.48504 * 109.46968 * 329.99755 * 16 14 12 20 20 C 1.46924 * 118.75045 * 306.40149 * 7 6 5 21 21 H 1.08996 * 109.47233 * 299.92160 * 1 2 3 22 22 H 1.08998 * 109.46837 * 59.92643 * 1 2 3 23 23 H 1.09001 * 109.47172 * 179.97438 * 1 2 3 24 24 H 1.09004 * 109.46151 * 61.29710 * 4 2 1 25 25 H 1.09003 * 109.45036 * 301.33462 * 4 2 1 26 26 H 1.09001 * 109.49690 * 58.59130 * 5 4 2 27 27 H 1.09006 * 109.50002 * 178.65152 * 5 4 2 28 28 H 1.09001 * 109.58196 * 174.43590 * 6 5 4 29 29 H 1.09000 * 109.59022 * 294.86093 * 6 5 4 30 30 H 0.97001 * 119.99789 * 5.07768 * 10 8 7 31 31 H 1.08996 * 109.47404 * 299.99764 * 11 10 8 32 32 H 1.09006 * 109.47359 * 60.00430 * 11 10 8 33 33 H 0.97007 * 120.00089 * 179.97438 * 15 14 12 34 34 H 1.08991 * 109.59079 * 293.82058 * 20 7 6 35 35 H 1.09005 * 109.70189 * 173.46484 * 20 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8942 1.0273 0.0000 4 6 2.0408 -0.7230 1.2485 5 6 3.5708 -0.6949 1.2661 6 6 4.1059 -1.4269 0.0314 7 7 3.5047 -0.8292 -1.1694 8 6 4.2813 -0.3858 -2.1777 9 16 3.5636 0.1882 -3.6222 10 7 5.6228 -0.3942 -2.0490 11 6 6.4630 0.1895 -3.0975 12 6 7.9137 0.0531 -2.7128 13 1 8.1828 -0.4214 -1.7807 14 6 8.8973 0.5340 -3.5509 15 7 10.1633 0.4145 -3.2155 16 14 8.4316 1.3553 -5.1628 17 1 8.2537 2.8130 -4.9424 18 1 9.5088 1.1334 -6.1606 19 1 7.1622 0.7722 -5.6668 20 6 2.0414 -0.7240 -1.2495 21 1 -0.3633 0.5126 0.8906 22 1 -0.3633 0.5150 -0.8893 23 1 -0.3633 -1.0277 -0.0005 24 1 1.6967 -1.7572 1.2355 25 1 1.6580 -0.2241 2.1389 26 1 3.9159 0.3390 1.2542 27 1 3.9334 -1.1890 2.1676 28 1 5.1902 -1.3248 -0.0125 29 1 3.8382 -2.4821 0.0875 30 1 6.0320 -0.7868 -1.2620 31 1 6.2855 -0.3323 -4.0379 32 1 6.2165 1.2448 -3.2153 33 1 10.8553 0.7526 -3.8052 34 1 1.6053 -1.7217 -1.2979 35 1 1.7617 -0.1594 -2.1389 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000244332686.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:58:02 Heat of formation + Delta-G solvation = 3.650133 kcal Electronic energy + Delta-G solvation = -15634.004938 eV Core-core repulsion = 13178.550259 eV Total energy + Delta-G solvation = -2455.454679 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 242.115 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.89199 -36.92533 -34.02004 -32.55069 -32.32741 -28.47524 -27.06018 -25.59685 -23.17698 -22.26226 -21.22512 -19.99591 -18.22626 -16.88231 -16.39504 -15.19981 -14.84157 -14.79455 -14.66789 -14.28713 -13.69533 -13.41281 -13.33568 -12.84892 -12.48675 -12.27647 -12.00589 -11.52787 -11.31616 -11.06464 -10.96760 -10.88381 -10.74770 -10.48687 -10.36673 -9.95125 -9.63859 -8.81992 -8.30368 -7.27829 -6.84072 -6.28690 -4.33841 1.97819 2.40887 3.08092 3.28517 3.35341 3.48628 3.88170 4.31421 4.45396 4.57133 4.61371 4.76501 4.99540 5.07533 5.17080 5.26266 5.39145 5.44951 5.53310 5.57603 5.69535 5.79837 5.86243 5.95650 6.03310 6.20209 6.42412 6.55322 6.91587 6.98432 7.23275 7.37433 7.92399 8.22999 8.64694 9.28940 10.82444 Molecular weight = 242.11amu Principal moments of inertia in cm(-1) A = 0.036763 B = 0.006101 C = 0.005415 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 761.459517 B = 4588.206556 C = 5169.128139 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.107 4.107 3 H 0.076 0.924 4 C -0.115 4.115 5 C -0.134 4.134 6 C 0.097 3.903 7 N -0.583 5.583 8 C 0.564 3.436 9 S -0.685 6.685 10 N -0.649 5.649 11 C 0.222 3.778 12 C -0.555 4.555 13 H 0.077 0.923 14 C 0.084 3.916 15 N -0.889 5.889 16 Si 0.873 3.127 17 H -0.271 1.271 18 H -0.283 1.283 19 H -0.251 1.251 20 C 0.113 3.887 21 H 0.057 0.943 22 H 0.061 0.939 23 H 0.056 0.944 24 H 0.064 0.936 25 H 0.066 0.934 26 H 0.070 0.930 27 H 0.078 0.922 28 H 0.082 0.918 29 H 0.078 0.922 30 H 0.394 0.606 31 H 0.050 0.950 32 H 0.040 0.960 33 H 0.270 0.730 34 H 0.068 0.932 35 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.371 -3.599 10.829 19.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.126 4.126 3 H 0.094 0.906 4 C -0.153 4.153 5 C -0.172 4.172 6 C -0.029 4.029 7 N -0.296 5.296 8 C 0.203 3.797 9 S -0.557 6.557 10 N -0.274 5.274 11 C 0.101 3.899 12 C -0.593 4.593 13 H 0.095 0.905 14 C -0.121 4.121 15 N -0.526 5.526 16 Si 0.698 3.302 17 H -0.196 1.196 18 H -0.208 1.208 19 H -0.175 1.175 20 C -0.010 4.010 21 H 0.076 0.924 22 H 0.080 0.920 23 H 0.075 0.925 24 H 0.083 0.917 25 H 0.085 0.915 26 H 0.089 0.911 27 H 0.097 0.903 28 H 0.100 0.900 29 H 0.096 0.904 30 H 0.233 0.767 31 H 0.067 0.933 32 H 0.058 0.942 33 H 0.079 0.921 34 H 0.087 0.913 35 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -15.499 -3.172 9.808 18.614 hybrid contribution 0.672 -0.107 0.433 0.806 sum -14.828 -3.278 10.241 18.316 Atomic orbital electron populations 1.21728 0.94116 1.01993 1.02200 1.21520 0.96136 1.00393 0.94575 0.90559 1.21618 0.94842 1.00893 0.97919 1.21912 0.96472 1.01676 0.97182 1.21917 0.98561 0.97766 0.84691 1.47068 1.07310 1.59688 1.15560 1.22191 0.84915 0.82452 0.90172 1.93112 1.75882 1.68938 1.17773 1.45755 1.02524 1.54717 1.24424 1.19976 0.88818 0.94710 0.86445 1.20994 0.87860 1.42096 1.08307 0.90504 1.24712 0.94507 0.94710 0.98165 1.69871 0.99538 1.45335 1.37825 0.86845 0.79505 0.80662 0.83162 1.19643 1.20834 1.17491 1.22128 0.76381 1.01715 1.00821 0.92433 0.91981 0.92540 0.91693 0.91544 0.91117 0.90309 0.89962 0.90395 0.76744 0.93260 0.94185 0.92062 0.91344 0.85720 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.14 9.20 37.16 0.34 -0.80 16 2 C -0.11 -1.05 2.87 -90.50 -0.26 -1.31 16 3 H 0.08 0.88 8.14 -51.93 -0.42 0.45 16 4 C -0.12 -0.95 5.17 -26.69 -0.14 -1.09 16 5 C -0.13 -1.21 6.08 -26.61 -0.16 -1.37 16 6 C 0.10 1.06 6.44 -3.67 -0.02 1.03 16 7 N -0.58 -8.38 2.97 -174.74 -0.52 -8.90 16 8 C 0.56 10.75 7.71 -86.92 -0.67 10.08 16 9 S -0.68 -15.62 27.04 -107.50 -2.91 -18.52 16 10 N -0.65 -12.95 5.46 -63.21 -0.35 -13.29 16 11 C 0.22 5.37 3.96 -5.19 -0.02 5.35 16 12 C -0.55 -14.91 9.83 -34.44 -0.34 -15.25 16 13 H 0.08 2.14 7.84 -52.49 -0.41 1.73 16 14 C 0.08 2.34 5.47 -17.82 -0.10 2.24 16 15 N -0.89 -26.06 13.96 55.43 0.77 -25.29 16 16 Si 0.87 21.38 27.47 -169.99 -4.67 16.71 16 17 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 18 H -0.28 -6.80 7.11 56.52 0.40 -6.39 16 19 H -0.25 -6.20 6.54 56.52 0.37 -5.83 16 20 C 0.11 1.41 5.58 -3.71 -0.02 1.39 16 21 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 22 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 23 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 24 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 25 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 26 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 27 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 28 H 0.08 0.93 5.57 -51.93 -0.29 0.64 16 29 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.39 6.91 5.78 -40.82 -0.24 6.67 16 31 H 0.05 1.28 6.95 -51.93 -0.36 0.92 16 32 H 0.04 1.02 7.51 -51.93 -0.39 0.63 16 33 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 34 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.12 1.89 6.01 -50.63 -0.30 1.59 16 LS Contribution 289.34 15.07 4.36 4.36 Total: -1.00 -31.98 289.34 -10.08 -42.06 By element: Atomic # 1 Polarization: 7.98 SS G_CDS: -5.39 Total: 2.60 kcal Atomic # 6 Polarization: 1.67 SS G_CDS: -1.39 Total: 0.28 kcal Atomic # 7 Polarization: -47.39 SS G_CDS: -0.09 Total: -47.48 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -4.67 Total: 16.71 kcal Atomic # 16 Polarization: -15.62 SS G_CDS: -2.91 Total: -18.52 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -31.98 -10.08 -42.06 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000244332686.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.709 kcal (2) G-P(sol) polarization free energy of solvation -31.978 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.731 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.059 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.650 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds